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Items: 1 to 50 of 55

1.

Partition Weighted Approach for Estimating the Marginal Posterior Density with Applications.

Wang YB, Chen MH, Kuo L, Lewis PO.

J Comput Graph Stat. 2019;28(2):334-349. doi: 10.1080/10618600.2018.1529600. Epub 2019 Mar 26.

2.

False negative diagnostic errors with polymerase chain reaction for the detection of cryptococcal meningoencephalitis.

Lewis PO, Lanier CG, Patel PD, Krolikowski WD, Krolikowski MA.

Med Mycol. 2019 Jun 18. pii: myz064. doi: 10.1093/mmy/myz064. [Epub ahead of print]

PMID:
31212317
3.

Order, please! Uncertainty in the ordinal-level classification of Chlorophyceae.

Fučíková K, Lewis PO, Neupane S, Karol KG, Lewis LA.

PeerJ. 2019 May 15;7:e6899. doi: 10.7717/peerj.6899. eCollection 2019.

4.

BEAGLE 3: Improved Performance, Scaling, and Usability for a High-Performance Computing Library for Statistical Phylogenetics.

Ayres DL, Cummings MP, Baele G, Darling AE, Lewis PO, Swofford DL, Huelsenbeck JP, Lemey P, Rambaut A, Suchard MA.

Syst Biol. 2019 Apr 23. pii: syz020. doi: 10.1093/sysbio/syz020. [Epub ahead of print]

PMID:
31034053
5.

Vancomycin plus nafcillin salvage for the treatment of persistent methicillin-resistant Staphylococcus aureus bacteremia following daptomycin failure: a case report and literature review.

Lewis PO, Sevinsky RE, Patel PD, Krolikowski MR, Cluck DB.

Ther Adv Infect Dis. 2018 Sep 10;6:2049936118797404. doi: 10.1177/2049936118797404. eCollection 2019 Jan-Dec.

6.

Assessing Combinability of Phylogenomic Data using Bayes Factors.

Neupane S, Fucíková K, Lewis LA, Kuo L, Chen MH, Lewis PO.

Syst Biol. 2019 Feb 6. doi: 10.1093/sysbio/syz007. [Epub ahead of print]

PMID:
30726954
7.

Continuous Infusion Ampicillin for the Outpatient Management of Enterococcal Endocarditis: A Case Report and Literature Review.

Lewis PO, Jones A, Amodei RJ, Youssef D.

J Pharm Pract. 2018 Oct 16:897190018804964. doi: 10.1177/0897190018804964. [Epub ahead of print]

PMID:
30326771
8.

Treatment strategies for persistent methicillin-resistant Staphylococcus aureus bacteraemia.

Lewis PO, Heil EL, Covert KL, Cluck DB.

J Clin Pharm Ther. 2018 Oct;43(5):614-625. doi: 10.1111/jcpt.12743. Epub 2018 Jul 12. Review.

PMID:
30003555
9.

Failure of ceftolozane-tazobactam salvage therapy in complicated pneumonia with lung abscess.

Lewis PO, Cluck DB, Tharp JL, Krolikowski MA, Patel PD.

Clin Case Rep. 2018 May 28;6(7):1308-1312. doi: 10.1002/ccr3.1612. eCollection 2018 Jul.

10.

A New Monte Carlo Method for Estimating Marginal Likelihoods.

Wang YB, Chen MH, Kuo L, Lewis PO.

Bayesian Anal. 2018 Jun;13(2):311-333. doi: 10.1214/17-BA1049. Epub 2017 Feb 28.

11.
12.

Successful Treatment of Cerebral Toxoplasmosis Using Pyrimethamine Oral Solution Compounded From Inexpensive Bulk Powder.

Hodgson HA, Sim T, Gonzalez H, Aziz M, Rhee Y, Lewis PO, Jhobalia N, Shields B, Wang SK.

Open Forum Infect Dis. 2018 Apr 18;5(4):ofy055. doi: 10.1093/ofid/ofy055. eCollection 2018 Apr.

13.

Stability of a pyrimethamine suspension compounded from bulk powder.

Lewis PO, Cluck DB, Huffman JD, Ogle AP, Brown SD.

Am J Health Syst Pharm. 2017 Dec 15;74(24):2060-2064. doi: 10.2146/ajhp160551.

PMID:
29222363
14.

Appropriate Use of Proton Pump Inhibitors: A Double-Edged Sword.

Lewis PO, Covert KL.

Am J Med. 2018 Mar;131(3):218-219. doi: 10.1016/j.amjmed.2017.11.001. Epub 2017 Nov 20. No abstract available.

PMID:
29157650
15.

Implementation of Global Strategies to Prevent Hospital-Onset Clostridium difficile Infection: Targeting Proton Pump Inhibitors and Probiotics.

Lewis PO, Lundberg TS, Tharp JL, Runnels CW.

Ann Pharmacother. 2017 Oct;51(10):848-854. doi: 10.1177/1060028017694050. Epub 2017 Aug 18.

PMID:
28821215
16.

Successful stepdown treatment of pulmonary histoplasmosis with thrice-weekly liposomal amphotericin B in a hospital-associated, outpatient infusion centre: A case report.

Lewis PO, Khan I, Patel P.

J Clin Pharm Ther. 2018 Apr;43(2):269-272. doi: 10.1111/jcpt.12609. Epub 2017 Aug 14.

PMID:
28806478
17.

Rifampin-Resistant Staphylococcus aureus Bacteremia in a Patient on Chronic Rifaximin.

Lewis PO, Khan I, Patel P.

Ann Pharmacother. 2017 Jul;51(7):617-618. doi: 10.1177/1060028017701221. Epub 2017 Mar 20. No abstract available.

PMID:
28622735
18.

Beyond-use dating of lidocaine alone and in two "magic mouthwash" preparations.

Kirk LM, Brown SD, Luu Y, Ogle A, Huffman J, Lewis PO.

Am J Health Syst Pharm. 2017 May 1;74(9):e202-e210. doi: 10.2146/ajhp160214.

PMID:
28438825
19.

Evolution of woody life form on tropical mountains in the tribe Spermacoceae (Rubiaceae).

Neupane S, Lewis PO, Dessein S, Shanks H, Paudyal S, Lens F.

Am J Bot. 2017 Mar;104(3):419-438. doi: 10.3732/ajb.1600248. Epub 2017 Mar 8.

20.

Anchored phylogenomics improves the resolution of evolutionary relationships in the rapid radiation of Protea L.

Mitchell N, Lewis PO, Lemmon EM, Lemmon AR, Holsinger KE.

Am J Bot. 2017 Jan;104(1):102-115. doi: 10.3732/ajb.1600227. Epub 2017 Jan 19.

21.

Risk and Severity of Hospital-Acquired Clostridium difficile Infection in Patients Taking Proton Pump Inhibitors.

Lewis PO, Litchfield JM, Tharp JL, Garcia RM, Pourmorteza M, Reddy CM.

Pharmacotherapy. 2016 Sep;36(9):986-93. doi: 10.1002/phar.1801. Epub 2016 Aug 12.

PMID:
27455386
22.

Hiding in plain sight: Koshicola spirodelophila gen. et sp. nov. (Chaetopeltidales, Chlorophyceae), a novel green alga associated with the aquatic angiosperm Spirodela polyrhiza.

Watanabe S, Fučíková K, Lewis LA, Lewis PO.

Am J Bot. 2016 May;103(5):865-75. doi: 10.3732/ajb.1500481. Epub 2016 Apr 27.

23.

Estimating Bayesian Phylogenetic Information Content.

Lewis PO, Chen MH, Kuo L, Lewis LA, Fučíková K, Neupane S, Wang YB, Shi D.

Syst Biol. 2016 Nov;65(6):1009-1023. Epub 2016 May 6.

24.

Comparative analyses of chloroplast genome data representing nine green algae in Sphaeropleales (Chlorophyceae, Chlorophyta).

Fučíková K, Lewis LA, Lewis PO.

Data Brief. 2016 Mar 9;7:558-70. doi: 10.1016/j.dib.2016.03.014. eCollection 2016 Jun.

25.

Chloroplast phylogenomic data from the green algal order Sphaeropleales (Chlorophyceae, Chlorophyta) reveal complex patterns of sequence evolution.

Fučíková K, Lewis PO, Lewis LA.

Mol Phylogenet Evol. 2016 May;98:176-83. doi: 10.1016/j.ympev.2016.01.022. Epub 2016 Feb 20.

PMID:
26903036
26.

Phycas: software for Bayesian phylogenetic analysis.

Lewis PO, Holder MT, Swofford DL.

Syst Biol. 2015 May;64(3):525-31. doi: 10.1093/sysbio/syu132. Epub 2015 Jan 9.

PMID:
25577605
27.

Gene arrangement convergence, diverse intron content, and genetic code modifications in mitochondrial genomes of sphaeropleales (chlorophyta).

Fučíková K, Lewis PO, González-Halphen D, Lewis LA.

Genome Biol Evol. 2014 Aug 8;6(8):2170-80. doi: 10.1093/gbe/evu172.

28.

Comparison of three generic vancomycin products using liquid chromatography-mass spectrometry and an online tool.

Lewis PO, Kirk LM, Brown SD.

Am J Health Syst Pharm. 2014 Jun 15;71(12):1029-38. doi: 10.2146/ajhp130516.

PMID:
24865760
29.

Putting incertae sedis taxa in their place: a proposal for ten new families and three new genera in Sphaeropleales (Chlorophyceae, Chlorophyta).

Fučíková K, Lewis PO, Lewis LA.

J Phycol. 2014 Feb;50(1):14-25. doi: 10.1111/jpy.12118. Epub 2013 Oct 10.

PMID:
26988005
30.

Posterior predictive Bayesian phylogenetic model selection.

Lewis PO, Xie W, Chen MH, Fan Y, Kuo L.

Syst Biol. 2014 May;63(3):309-21. doi: 10.1093/sysbio/syt068. Epub 2013 Nov 4.

31.

Probing the Monophyly of the Sphaeropleales (Chlorophyceae) Using Data From Five Genes.

Tippery NP, Fučíková K, Lewis PO, Lewis LA.

J Phycol. 2012 Dec;48(6):1482-93. doi: 10.1111/jpy.12003. Epub 2012 Nov 26.

PMID:
27009998
32.

BEAGLE: an application programming interface and high-performance computing library for statistical phylogenetics.

Ayres DL, Darling A, Zwickl DJ, Beerli P, Holder MT, Lewis PO, Huelsenbeck JP, Ronquist F, Swofford DL, Cummings MP, Rambaut A, Suchard MA.

Syst Biol. 2012 Jan;61(1):170-3. doi: 10.1093/sysbio/syr100. Epub 2011 Oct 1.

33.

Mobile in situ obstetric emergency simulation and teamwork training to improve maternal-fetal safety in hospitals.

Guise JM, Lowe NK, Deering S, Lewis PO, O'Haire C, Irwin LK, Blaser M, Wood LS, Kanki BG.

Jt Comm J Qual Patient Saf. 2010 Oct;36(10):443-53.

PMID:
21548505
34.

Improving marginal likelihood estimation for Bayesian phylogenetic model selection.

Xie W, Lewis PO, Fan Y, Kuo L, Chen MH.

Syst Biol. 2011 Mar;60(2):150-60. doi: 10.1093/sysbio/syq085. Epub 2010 Dec 27.

35.

Choosing among partition models in Bayesian phylogenetics.

Fan Y, Wu R, Chen MH, Kuo L, Lewis PO.

Mol Biol Evol. 2011 Jan;28(1):523-32. doi: 10.1093/molbev/msq224. Epub 2010 Aug 27.

36.

The akaike information criterion will not choose the no common mechanism model.

Holder MT, Lewis PO, Swofford DL.

Syst Biol. 2010 Jul;59(4):477-85. doi: 10.1093/sysbio/syq028. Epub 2010 May 31. No abstract available.

PMID:
20547783
37.

A justification for reporting the majority-rule consensus tree in Bayesian phylogenetics.

Holder MT, Sukumaran J, Lewis PO.

Syst Biol. 2008 Oct;57(5):814-21. doi: 10.1080/10635150802422308. No abstract available.

PMID:
18853367
38.

Distribution and evolution of pseudogenes, gene losses, and a gene rearrangement in the plastid genome of the nonphotosynthetic liverwort, Aneura mirabilis (Metzgeriales, Jungermanniopsida).

Wickett NJ, Fan Y, Lewis PO, Goffinet B.

J Mol Evol. 2008 Jul;67(1):111-22. doi: 10.1007/s00239-008-9133-1. Epub 2008 Jul 2.

PMID:
18594897
39.

Hastings ratio of the LOCAL proposal used in Bayesian phylogenetics.

Holder MT, Lewis PO, Swofford DL, Larget B.

Syst Biol. 2005 Dec;54(6):961-5. No abstract available.

PMID:
16385776
40.

Unearthing the molecular phylodiversity of desert soil green algae (Chlorophyta).

Lewis LA, Lewis PO.

Syst Biol. 2005 Dec;54(6):936-47.

PMID:
16338765
41.

Polytomies and Bayesian phylogenetic inference.

Lewis PO, Holder MT, Holsinger KE.

Syst Biol. 2005 Apr;54(2):241-53.

PMID:
16012095
42.

Genetic diversity in Chihuahuan Desert populations of creosotebush (Zygophyllaceae: Larrea tridentata).

Duran KL, Lowrey TK, Parmenter RR, Lewis PO.

Am J Bot. 2005 Apr;92(4):722-9. doi: 10.3732/ajb.92.4.722.

43.

NCL: a C++ class library for interpreting data files in NEXUS format.

Lewis PO.

Bioinformatics. 2003 Nov 22;19(17):2330-1.

PMID:
14630669
44.

Phylogeny estimation: traditional and Bayesian approaches.

Holder M, Lewis PO.

Nat Rev Genet. 2003 Apr;4(4):275-84. Review.

PMID:
12671658
45.

Genetic algorithms and parallel processing in maximum-likelihood phylogeny inference.

Brauer MJ, Holder MT, Dries LA, Zwickl DJ, Lewis PO, Hillis DM.

Mol Biol Evol. 2002 Oct;19(10):1717-26.

PMID:
12270898
46.

Bias in phylogenetic estimation and its relevance to the choice between parsimony and likelihood methods.

Swofford DL, Waddell PJ, Huelsenbeck JP, Foster PG, Lewis PO, Rogers JS.

Syst Biol. 2001 Aug;50(4):525-39. No abstract available.

PMID:
12116651
47.
48.

A Bayesian approach to inferring population structure from dominant markers.

Holsinger KE, Lewis PO, Dey DK.

Mol Ecol. 2002 Jul;11(7):1157-64.

PMID:
12074723
49.
50.

Phylogenetic systematics turns over a new leaf.

Lewis PO.

Trends Ecol Evol. 2001 Jan 1;16(1):30-37.

PMID:
11146142

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