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Order, please! Uncertainty in the ordinal-level classification of Chlorophyceae.

Fučíková K, Lewis PO, Neupane S, Karol KG, Lewis LA.

PeerJ. 2019 May 15;7:e6899. doi: 10.7717/peerj.6899. eCollection 2019.


Assessing Combinability of Phylogenomic Data Using Bayes Factors.

Neupane S, Fučíková K, Lewis LA, Kuo L, Chen MH, Lewis PO.

Syst Biol. 2019 Sep 1;68(5):744-754. doi: 10.1093/sysbio/syz007.


Contemporaneous radiations of fungi and plants linked to symbiosis.

Lutzoni F, Nowak MD, Alfaro ME, Reeb V, Miadlikowska J, Krug M, Arnold AE, Lewis LA, Swofford DL, Hibbett D, Hilu K, James TY, Quandt D, Magallón S.

Nat Commun. 2018 Dec 21;9(1):5451. doi: 10.1038/s41467-018-07849-9.


A Meningococcal Native Outer Membrane Vesicle Vaccine With Attenuated Endotoxin and Overexpressed Factor H Binding Protein Elicits Gonococcal Bactericidal Antibodies.

Beernink PT, Ispasanie E, Lewis LA, Ram S, Moe GR, Granoff DM.

J Infect Dis. 2019 Mar 15;219(7):1130-1137. doi: 10.1093/infdis/jiy609.


Bioinformatic characterisation of the effector repertoire of the strawberry pathogen Phytophthora cactorum.

Armitage AD, Lysøe E, Nellist CF, Lewis LA, Cano LM, Harrison RJ, Brurberg MB.

PLoS One. 2018 Oct 2;13(10):e0202305. doi: 10.1371/journal.pone.0202305. eCollection 2018.


Human Factor H Domains 6 and 7 Fused to IgG1 Fc Are Immunotherapeutic against Neisseria gonorrhoeae.

Shaughnessy J, Lewis LA, Zheng B, Carr C, Bass I, Gulati S, DeOliveira RB, Gose S, Reed GW, Botto M, Rice PA, Ram S.

J Immunol. 2018 Nov 1;201(9):2700-2709. doi: 10.4049/jimmunol.1701666. Epub 2018 Sep 28.


Context-dependent variability in blue whale acoustic behaviour.

Lewis LA, Calambokidis J, Stimpert AK, Fahlbusch J, Friedlaender AS, McKenna MF, Mesnick SL, Oleson EM, Southall BL, Szesciorka AR, Širović A.

R Soc Open Sci. 2018 Aug 8;5(8):180241. doi: 10.1098/rsos.180241. eCollection 2018 Aug.


A Novel Sialylation Site on Neisseria gonorrhoeae Lipooligosaccharide Links Heptose II Lactose Expression with Pathogenicity.

Ram S, Gulati S, Lewis LA, Chakraborti S, Zheng B, DeOliveira RB, Reed GW, Cox AD, Li J, St Michael F, Stupak J, Su XH, Saha S, Landig CS, Varki A, Rice PA.

Infect Immun. 2018 Jul 23;86(8). pii: e00285-18. doi: 10.1128/IAI.00285-18. Print 2018 Aug.


Electronic Health Record Documentation of Nursing Care Procedures and Change in Weight of Healthy, Moderately Premature Neonates.

Lewis LA, Jacobson AF.

Neonatal Netw. 2017 Nov 1;36(6):348-358. doi: 10.1891/0730-0832.36.6.348.


Hold the salt: Freshwater origin of primary plastids.

Lewis LA.

Proc Natl Acad Sci U S A. 2017 Sep 12;114(37):9759-9760. doi: 10.1073/pnas.1712956114. Epub 2017 Aug 31. No abstract available.


Gonococcal lipooligosaccharide sialylation: virulence factor and target for novel immunotherapeutics.

Ram S, Shaughnessy J, de Oliveira RB, Lewis LA, Gulati S, Rice PA.

Pathog Dis. 2017 Jun 1;75(4). doi: 10.1093/femspd/ftx049.


The terrestrial green macroalga Prasiola calophylla (Trebouxiophyceae, Chlorophyta): ecophysiological performance under water-limiting conditions.

Holzinger A, Herburger K, Blaas K, Lewis LA, Karsten U.

Protoplasma. 2017 Jul;254(4):1755-1767. doi: 10.1007/s00709-016-1068-6. Epub 2017 Jan 9.


Utilizing complement evasion strategies to design complement-based antibacterial immunotherapeutics: Lessons from the pathogenic Neisseriae.

Ram S, Shaughnessy J, DeOliveira RB, Lewis LA, Gulati S, Rice PA.

Immunobiology. 2016 Oct;221(10):1110-23. doi: 10.1016/j.imbio.2016.05.016. Epub 2016 Jun 1. Review.


Hiding in plain sight: Koshicola spirodelophila gen. et sp. nov. (Chaetopeltidales, Chlorophyceae), a novel green alga associated with the aquatic angiosperm Spirodela polyrhiza.

Watanabe S, Fučíková K, Lewis LA, Lewis PO.

Am J Bot. 2016 May;103(5):865-75. doi: 10.3732/ajb.1500481. Epub 2016 Apr 27.


Phase-Variable Heptose I Glycan Extensions Modulate Efficacy of 2C7 Vaccine Antibody Directed against Neisseria gonorrhoeae Lipooligosaccharide.

Chakraborti S, Lewis LA, Cox AD, St Michael F, Li J, Rice PA, Ram S.

J Immunol. 2016 Jun 1;196(11):4576-86. doi: 10.4049/jimmunol.1600374. Epub 2016 May 2.


Estimating Bayesian Phylogenetic Information Content.

Lewis PO, Chen MH, Kuo L, Lewis LA, Fučíková K, Neupane S, Wang YB, Shi D.

Syst Biol. 2016 Nov;65(6):1009-1023. Epub 2016 May 6.


Comparative analyses of chloroplast genome data representing nine green algae in Sphaeropleales (Chlorophyceae, Chlorophyta).

Fučíková K, Lewis LA, Lewis PO.

Data Brief. 2016 Mar 9;7:558-70. doi: 10.1016/j.dib.2016.03.014. eCollection 2016 Jun.


Chodatodesmus australis sp. nov. (Scenedesmaceae, Chlorophyta) from Antarctica, with the emended description of the genus Chodatodesmus, and circumscription of Flechtneria rotunda gen. et sp. nov.

Sciuto K, Lewis LA, Verleyen E, Moro I, La Rocca N.

J Phycol. 2015 Dec;51(6):1172-88. doi: 10.1111/jpy.12355. Epub 2015 Nov 16.


Chloroplast phylogenomic data from the green algal order Sphaeropleales (Chlorophyceae, Chlorophyta) reveal complex patterns of sequence evolution.

Fučíková K, Lewis PO, Lewis LA.

Mol Phylogenet Evol. 2016 May;98:176-83. doi: 10.1016/j.ympev.2016.01.022. Epub 2016 Feb 20.


A Novel Factor H-Fc Chimeric Immunotherapeutic Molecule against Neisseria gonorrhoeae.

Shaughnessy J, Gulati S, Agarwal S, Unemo M, Ohnishi M, Su XH, Monks BG, Visintin A, Madico G, Lewis LA, Golenbock DT, Reed GW, Rice PA, Ram S.

J Immunol. 2016 Feb 15;196(4):1732-40. doi: 10.4049/jimmunol.1500292. Epub 2016 Jan 15.


Utilizing CMP-Sialic Acid Analogs to Unravel Neisseria gonorrhoeae Lipooligosaccharide-Mediated Complement Resistance and Design Novel Therapeutics.

Gulati S, Schoenhofen IC, Whitfield DM, Cox AD, Li J, St Michael F, Vinogradov EV, Stupak J, Zheng B, Ohnishi M, Unemo M, Lewis LA, Taylor RE, Landig CS, Diaz S, Reed GW, Varki A, Rice PA, Ram S.

PLoS Pathog. 2015 Dec 2;11(12):e1005290. doi: 10.1371/journal.ppat.1005290. eCollection 2015 Dec.


Transcriptional Dynamics Driving MAMP-Triggered Immunity and Pathogen Effector-Mediated Immunosuppression in Arabidopsis Leaves Following Infection with Pseudomonas syringae pv tomato DC3000.

Lewis LA, Polanski K, de Torres-Zabala M, Jayaraman S, Bowden L, Moore J, Penfold CA, Jenkins DJ, Hill C, Baxter L, Kulasekaran S, Truman W, Littlejohn G, Prusinska J, Mead A, Steinbrenner J, Hickman R, Rand D, Wild DL, Ott S, Buchanan-Wollaston V, Smirnoff N, Beynon J, Denby K, Grant M.

Plant Cell. 2015 Nov;27(11):3038-64. doi: 10.1105/tpc.15.00471. Epub 2015 Nov 13.


Spatially-resolved analyses of aerodynamic fallout from a uranium-fueled nuclear test.

Lewis LA, Knight KB, Matzel JE, Prussin SG, Zimmer MM, Kinman WS, Ryerson FJ, Hutcheon ID.

J Environ Radioact. 2015 Oct;148:183-95. doi: 10.1016/j.jenvrad.2015.04.006. Epub 2015 Jul 28.


Desiccation tolerance in the chlorophyte green alga Ulva compressa: does cell wall architecture contribute to ecological success?

Holzinger A, Herburger K, Kaplan F, Lewis LA.

Planta. 2015 Aug;242(2):477-92. doi: 10.1007/s00425-015-2292-6. Epub 2015 Apr 21.


Identification of 24h Ixodes scapularis immunogenic tick saliva proteins.

Lewis LA, Radulović ŽM, Kim TK, Porter LM, Mulenga A.

Ticks Tick Borne Dis. 2015 Apr;6(3):424-34. doi: 10.1016/j.ttbdis.2015.03.012. Epub 2015 Mar 29.


Characterization of the novel DNA gyrase inhibitor AZD0914: low resistance potential and lack of cross-resistance in Neisseria gonorrhoeae.

Alm RA, Lahiri SD, Kutschke A, Otterson LG, McLaughlin RE, Whiteaker JD, Lewis LA, Su X, Huband MD, Gardner H, Mueller JP.

Antimicrob Agents Chemother. 2015 Mar;59(3):1478-86. doi: 10.1128/AAC.04456-14. Epub 2014 Dec 22.


Gene arrangement convergence, diverse intron content, and genetic code modifications in mitochondrial genomes of sphaeropleales (chlorophyta).

Fučíková K, Lewis PO, González-Halphen D, Lewis LA.

Genome Biol Evol. 2014 Aug 8;6(8):2170-80. doi: 10.1093/gbe/evu172.


Evidence that the insertion events of IS2 transposition are biased towards abrupt compositional shifts in target DNA and modulated by a diverse set of culture parameters.

Gonçalves GA, Oliveira PH, Gomes AG, Prather KL, Lewis LA, Prazeres DM, Monteiro GA.

Appl Microbiol Biotechnol. 2014 Aug;98(15):6609-19. doi: 10.1007/s00253-014-5695-6. Epub 2014 Apr 27.


Inhibition of the alternative pathway of nonhuman infant complement by porin B2 contributes to virulence of Neisseria meningitidis in the infant rat model.

Lewis LA, Vu DM, Granoff DM, Ram S.

Infect Immun. 2014 Jun;82(6):2574-84. doi: 10.1128/IAI.01517-14. Epub 2014 Mar 31.


Lacustrine Nostoc (Nostocales) and associated microbiome generate a new type of modern clotted microbialite.

Graham LE, Knack JJ, Piotrowski MJ, Wilcox LW, Cook ME, Wellman CH, Taylor W, Lewis LA, Arancibia-Avila P.

J Phycol. 2014 Apr;50(2):280-91. doi: 10.1111/jpy.12152. Epub 2014 Jan 13.


A blood meal-induced Ixodes scapularis tick saliva serpin inhibits trypsin and thrombin, and interferes with platelet aggregation and blood clotting.

Ibelli AM, Kim TK, Hill CC, Lewis LA, Bakshi M, Miller S, Porter L, Mulenga A.

Int J Parasitol. 2014 May;44(6):369-79. doi: 10.1016/j.ijpara.2014.01.010. Epub 2014 Feb 28.


Putting incertae sedis taxa in their place: a proposal for ten new families and three new genera in Sphaeropleales (Chlorophyceae, Chlorophyta).

Fučíková K, Lewis PO, Lewis LA.

J Phycol. 2014 Feb;50(1):14-25. doi: 10.1111/jpy.12118. Epub 2013 Oct 10.


Mechanistic insights into the analgesic efficacy of A-1264087, a novel neuronal Ca(2+) channel blocker that reduces nociception in rat preclinical pain models.

Zhu CZ, Vortherms TA, Zhang M, Xu J, Swensen AM, Niforatos W, Neelands T, Milicic I, Lewis LG, Zhong C, Gauvin D, Mikusa J, Zhan C, Pai M, Roderwald V, Chu KL, Cole EE, Bespalov A, Searle XB, McGaraughty S, Bitner RS, Jarvis MF, Bannon AW, Joshi SK, Scott VE, Lee CH.

J Pain. 2014 Apr;15(4):387.e1-14. doi: 10.1016/j.jpain.2013.12.002. Epub 2013 Dec 25.


Factor H-dependent alternative pathway inhibition mediated by porin B contributes to virulence of Neisseria meningitidis.

Lewis LA, Vu DM, Vasudhev S, Shaughnessy J, Granoff DM, Ram S.

MBio. 2013 Oct 15;4(5):e00339-13. doi: 10.1128/mBio.00339-13.


Meningococcal disease and the complement system.

Lewis LA, Ram S.

Virulence. 2014 Jan 1;5(1):98-126. doi: 10.4161/viru.26515. Epub 2013 Oct 8. Review.


Immunization against a saccharide epitope accelerates clearance of experimental gonococcal infection.

Gulati S, Zheng B, Reed GW, Su X, Cox AD, St Michael F, Stupak J, Lewis LA, Ram S, Rice PA.

PLoS Pathog. 2013;9(8):e1003559. doi: 10.1371/journal.ppat.1003559. Epub 2013 Aug 29.


Multimodal assessment of nervous and immune system responses following sciatic nerve injury.

Lasko L, Huang X, Voorbach MJ, Lewis LG, Stavropoulos J, Carriker J, Seifert TR, Baker SJ, Upadhyay J.

Pain. 2013 Dec;154(12):2782-93. doi: 10.1016/j.pain.2013.08.016. Epub 2013 Aug 21.


The xanthophyll cycle and NPQ in diverse desert and aquatic green algae.

Lunch CK, Lafountain AM, Thomas S, Frank HA, Lewis LA, Cardon ZG.

Photosynth Res. 2013 Jul;115(2-3):139-51. doi: 10.1007/s11120-013-9846-x. Epub 2013 Jun 2.


Probing the Monophyly of the Sphaeropleales (Chlorophyceae) Using Data From Five Genes.

Tippery NP, Fučíková K, Lewis PO, Lewis LA.

J Phycol. 2012 Dec;48(6):1482-93. doi: 10.1111/jpy.12003. Epub 2012 Nov 26.


High incidence of scrotal hernias in a closed colony of FVB mice.

Lewis LA, Huskey PS, Kusewitt DF.

Comp Med. 2012 Oct;62(5):391-4.


Phosphoethanolamine residues on the lipid A moiety of Neisseria gonorrhoeae lipooligosaccharide modulate binding of complement inhibitors and resistance to complement killing.

Lewis LA, Shafer WM, Dutta Ray T, Ram S, Rice PA.

Infect Immun. 2013 Jan;81(1):33-42. doi: 10.1128/IAI.00751-12. Epub 2012 Oct 15.


Osmotic stress in Arctic and Antarctic strains of the green alga Zygnema (Zygnematales, Streptophyta): effects on photosynthesis and ultrastructure.

Kaplan F, Lewis LA, Herburger K, Holzinger A.

Micron. 2013 Jan;44:317-30. doi: 10.1016/j.micron.2012.08.004. Epub 2012 Aug 20.


The amino acid sequence of Neisseria lactamica PorB surface-exposed loops influences Toll-like receptor 2-dependent cell activation.

Toussi DN, Carraway M, Wetzler LM, Lewis LA, Liu X, Massari P.

Infect Immun. 2012 Oct;80(10):3417-28. doi: 10.1128/IAI.00683-12. Epub 2012 Jul 23.

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