Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 44

1.

Geometric description of self-interaction potential in symmetric protein complexes.

Empereur-Mot C, Garcia-Seisdedos H, Elad N, Dey S, Levy ED.

Sci Data. 2019 May 17;6(1):64. doi: 10.1038/s41597-019-0058-x.

2.

Evolthon: A community endeavor to evolve lab evolution.

Kaminski Strauss S, Schirman D, Jona G, Brooks AN, Kunjapur AM, Nguyen Ba AN, Flint A, Solt A, Mershin A, Dixit A, Yona AH, Csörgő B, Busby BP, Hennig BP, Pál C, Schraivogel D, Schultz D, Wernick DG, Agashe D, Levi D, Zabezhinsky D, Russ D, Sass E, Tamar E, Herz E, Levy ED, Church GM, Yelin I, Nachman I, Gerst JE, Georgeson JM, Adamala KP, Steinmetz LM, Rübsam M, Ralser M, Klutstein M, Desai MM, Walunjkar N, Yin N, Aharon Hefetz N, Jakimo N, Snitser O, Adini O, Kumar P, Soo Hoo Smith R, Zeidan R, Hazan R, Rak R, Kishony R, Johnson S, Nouriel S, Vonesch SC, Foster S, Dagan T, Wein T, Karydis T, Wannier TM, Stiles T, Olin-Sandoval V, Mueller WF, Bar-On YM, Dahan O, Pilpel Y.

PLoS Biol. 2019 Mar 29;17(3):e3000182. doi: 10.1371/journal.pbio.3000182. eCollection 2019 Mar.

3.

Author Correction: Genome-wide SWAp-Tag yeast libraries for proteome exploration.

Weill U, Yofe I, Sass E, Stynen B, Davidi D, Natarajan J, Ben-Menachem R, Avihou Z, Goldman O, Harpaz N, Chuartzman S, Kniazev K, Knoblach B, Laborenz J, Boos F, Kowarzyk J, Ben-Dor S, Zalckvar E, Herrmann JM, Rachubinski RA, Pines O, Rapaport D, Michnick SW, Levy ED, Schuldiner M.

Nat Methods. 2019 Feb;16(2):205. doi: 10.1038/s41592-018-0297-3.

PMID:
30602782
4.

YeastRGB: comparing the abundance and localization of yeast proteins across cells and libraries.

Dubreuil B, Sass E, Nadav Y, Heidenreich M, Georgeson JM, Weill U, Duan Y, Meurer M, Schuldiner M, Knop M, Levy ED.

Nucleic Acids Res. 2019 Jan 8;47(D1):D1245-D1249. doi: 10.1093/nar/gky941.

5.

Infinite Assembly of Folded Proteins in Evolution, Disease, and Engineering.

Garcia-Seisdedos H, Villegas JA, Levy ED.

Angew Chem Int Ed Engl. 2019 Apr 16;58(17):5514-5531. doi: 10.1002/anie.201806092. Epub 2019 Feb 20. Review.

6.

Genome-wide C-SWAT library for high-throughput yeast genome tagging.

Meurer M, Duan Y, Sass E, Kats I, Herbst K, Buchmuller BC, Dederer V, Huber F, Kirrmaier D, Štefl M, Van Laer K, Dick TP, Lemberg MK, Khmelinskii A, Levy ED, Knop M.

Nat Methods. 2018 Aug;15(8):598-600. doi: 10.1038/s41592-018-0045-8. Epub 2018 Jul 9.

PMID:
29988096
7.

Genome-wide SWAp-Tag yeast libraries for proteome exploration.

Weill U, Yofe I, Sass E, Stynen B, Davidi D, Natarajan J, Ben-Menachem R, Avihou Z, Goldman O, Harpaz N, Chuartzman S, Kniazev K, Knoblach B, Laborenz J, Boos F, Kowarzyk J, Ben-Dor S, Zalckvar E, Herrmann JM, Rachubinski RA, Pines O, Rapaport D, Michnick SW, Levy ED, Schuldiner M.

Nat Methods. 2018 Aug;15(8):617-622. doi: 10.1038/s41592-018-0044-9. Epub 2018 Jul 9. Erratum in: Nat Methods. 2019 Feb;16(2):205.

8.

Inferring and Using Protein Quaternary Structure Information from Crystallographic Data.

Dey S, Levy ED.

Methods Mol Biol. 2018;1764:357-375. doi: 10.1007/978-1-4939-7759-8_23.

PMID:
29605927
9.

PDB-wide identification of biological assemblies from conserved quaternary structure geometry.

Dey S, Ritchie DW, Levy ED.

Nat Methods. 2018 Jan;15(1):67-72. doi: 10.1038/nmeth.4510. Epub 2017 Nov 20.

PMID:
29155427
10.

Proteins evolve on the edge of supramolecular self-assembly.

Garcia-Seisdedos H, Empereur-Mot C, Elad N, Levy ED.

Nature. 2017 Aug 10;548(7666):244-247. doi: 10.1038/nature23320. Epub 2017 Aug 2.

PMID:
28783726
11.

Exhaustive search of linear information encoding protein-peptide recognition.

Kelil A, Dubreuil B, Levy ED, Michnick SW.

PLoS Comput Biol. 2017 Apr 20;13(4):e1005499. doi: 10.1371/journal.pcbi.1005499. eCollection 2017 Apr.

12.

Protein-Fragment Complementation Assays for Large-Scale Analysis, Functional Dissection, and Spatiotemporal Dynamic Studies of Protein-Protein Interactions in Living Cells.

Michnick SW, Landry CR, Levy ED, Diss G, Ear PH, Kowarzyk J, Malleshaiah MK, Messier V, Tchekanda E.

Cold Spring Harb Protoc. 2016 Nov 1;2016(11). doi: 10.1101/pdb.top083543.

PMID:
27803260
13.

The Dihydrofolate Reductase Protein-Fragment Complementation Assay: A Survival-Selection Assay for Large-Scale Analysis of Protein-Protein Interactions.

Michnick SW, Levy ED, Landry CR, Kowarzyk J, Messier V.

Cold Spring Harb Protoc. 2016 Nov 1;2016(11). doi: 10.1101/pdb.prot090027.

PMID:
27803252
14.

Young phosphorylation is functionally silent.

Matalon O, Dubreuil B, Levy ED.

Science. 2016 Oct 14;354(6309):176-177. No abstract available.

PMID:
27738157
15.

Evolution of domain-peptide interactions to coadapt specificity and affinity to functional diversity.

Kelil A, Levy ED, Michnick SW.

Proc Natl Acad Sci U S A. 2016 Jul 5;113(27):E3862-71. doi: 10.1073/pnas.1518469113. Epub 2016 Jun 17.

16.

Landscape genomic analysis of candidate genes for climate adaptation in a California endemic oak, Quercus lobata.

Sork VL, Squire K, Gugger PF, Steele SE, Levy ED, Eckert AJ.

Am J Bot. 2016 Jan;103(1):33-46. doi: 10.3732/ajb.1500162. Epub 2016 Jan 7.

17.

Symmetry breaking in homo-oligomers: the curious case of mega-hemocyanin.

Garcia Seisdedos H, Steinberg A, Levy ED.

Structure. 2015 Jan 6;23(1):3-5. doi: 10.1016/j.str.2014.12.006.

18.

Fast and accurate discovery of degenerate linear motifs in protein sequences.

Kelil A, Dubreuil B, Levy ED, Michnick SW.

PLoS One. 2014 Sep 10;9(9):e106081. doi: 10.1371/journal.pone.0106081. eCollection 2014.

19.

Different subunits belonging to the same protein complex often exhibit discordant expression levels and evolutionary properties.

Matalon O, Horovitz A, Levy ED.

Curr Opin Struct Biol. 2014 Jun;26:113-20. doi: 10.1016/j.sbi.2014.06.001. Epub 2014 Jul 2. Review.

20.

High-resolution mapping of protein concentration reveals principles of proteome architecture and adaptation.

Levy ED, Kowarzyk J, Michnick SW.

Cell Rep. 2014 May 22;7(4):1333-40. doi: 10.1016/j.celrep.2014.04.009. Epub 2014 May 10.

21.

Extracting insight from noisy cellular networks.

Landry CR, Levy ED, Abd Rabbo D, Tarassov K, Michnick SW.

Cell. 2013 Nov 21;155(5):983-9. doi: 10.1016/j.cell.2013.11.003.

22.

Structural, evolutionary, and assembly principles of protein oligomerization.

Levy ED, Teichmann S.

Prog Mol Biol Transl Sci. 2013;117:25-51. doi: 10.1016/B978-0-12-386931-9.00002-7. Review.

PMID:
23663964
23.

Cellular crowding imposes global constraints on the chemistry and evolution of proteomes.

Levy ED, De S, Teichmann SA.

Proc Natl Acad Sci U S A. 2012 Dec 11;109(50):20461-6. doi: 10.1073/pnas.1209312109. Epub 2012 Nov 26.

24.

Protein abundance is key to distinguish promiscuous from functional phosphorylation based on evolutionary information.

Levy ED, Michnick SW, Landry CR.

Philos Trans R Soc Lond B Biol Sci. 2012 Sep 19;367(1602):2594-606. doi: 10.1098/rstb.2012.0078.

25.

Molecular characterization of the evolution of phagosomes.

Boulais J, Trost M, Landry CR, Dieckmann R, Levy ED, Soldati T, Michnick SW, Thibault P, Desjardins M.

Mol Syst Biol. 2010 Oct 19;6:423. doi: 10.1038/msb.2010.80.

26.

A simple definition of structural regions in proteins and its use in analyzing interface evolution.

Levy ED.

J Mol Biol. 2010 Nov 5;403(4):660-70. doi: 10.1016/j.jmb.2010.09.028. Epub 2010 Sep 22.

PMID:
20868694
27.

Homomeric protein complexes: evolution and assembly.

Venkatakrishnan AJ, Levy ED, Teichmann SA.

Biochem Soc Trans. 2010 Aug;38(4):879-82. doi: 10.1042/BST0380879. Review.

PMID:
20658970
28.

Systemizing the structures and structuring the system.

Levy ED, Teichmann SA.

Expert Rev Proteomics. 2010 Jun;7(3):319-22. doi: 10.1586/epr.10.33.

PMID:
20536302
29.

Cell signaling. Signaling through cooperation.

Levy ED, Landry CR, Michnick SW.

Science. 2010 May 21;328(5981):983-4. doi: 10.1126/science.1190993. No abstract available.

PMID:
20489011
30.

Physicochemical principles that regulate the competition between functional and dysfunctional association of proteins.

Pechmann S, Levy ED, Tartaglia GG, Vendruscolo M.

Proc Natl Acad Sci U S A. 2009 Jun 23;106(25):10159-64. doi: 10.1073/pnas.0812414106. Epub 2009 Jun 5.

31.

Self-assembly and evolution of homomeric protein complexes.

Villar G, Wilber AW, Williamson AJ, Thiara P, Doye JP, Louis AA, Jochum MN, Lewis AC, Levy ED.

Phys Rev Lett. 2009 Mar 20;102(11):118106. Epub 2009 Mar 18.

PMID:
19392244
32.

Weak functional constraints on phosphoproteomes.

Landry CR, Levy ED, Michnick SW.

Trends Genet. 2009 May;25(5):193-7. doi: 10.1016/j.tig.2009.03.003. Epub 2009 Apr 6.

PMID:
19349092
33.

How perfect can protein interactomes be?

Levy ED, Landry CR, Michnick SW.

Sci Signal. 2009 Mar 3;2(60):pe11. doi: 10.1126/scisignal.260pe11.

PMID:
19261595
34.

Assembly reflects evolution of protein complexes.

Levy ED, Boeri Erba E, Robinson CV, Teichmann SA.

Nature. 2008 Jun 26;453(7199):1262-5. doi: 10.1038/nature06942. Epub 2008 Jun 18.

35.

Evolution and dynamics of protein interactions and networks.

Levy ED, Pereira-Leal JB.

Curr Opin Struct Biol. 2008 Jun;18(3):349-57. doi: 10.1016/j.sbi.2008.03.003. Epub 2008 Apr 28. Review.

PMID:
18448325
36.

PiQSi: protein quaternary structure investigation.

Levy ED.

Structure. 2007 Nov;15(11):1364-7.

37.

CORRIE: enzyme sequence annotation with confidence estimates.

Audit B, Levy ED, Gilks WR, Goldovsky L, Ouzounis CA.

BMC Bioinformatics. 2007 May 22;8 Suppl 4:S3.

38.

Evolution of protein complexes by duplication of homomeric interactions.

Pereira-Leal JB, Levy ED, Kamp C, Teichmann SA.

Genome Biol. 2007;8(4):R51.

39.

3D complex: a structural classification of protein complexes.

Levy ED, Pereira-Leal JB, Chothia C, Teichmann SA.

PLoS Comput Biol. 2006 Nov 17;2(11):e155. Epub 2006 Oct 5.

40.

The origins and evolution of functional modules: lessons from protein complexes.

Pereira-Leal JB, Levy ED, Teichmann SA.

Philos Trans R Soc Lond B Biol Sci. 2006 Mar 29;361(1467):507-17. Review.

41.

Probabilistic annotation of protein sequences based on functional classifications.

Levy ED, Ouzounis CA, Gilks WR, Audit B.

BMC Bioinformatics. 2005 Dec 14;6:302.

42.

Ultrastructure of mesangial and juxtaglomerular cells in the kidney of a hibernator.

Zimny ML, Levy ED Jr.

Z Zellforsch Mikrosk Anat. 1971;118(3):326-32. No abstract available.

PMID:
4327754
43.

Rapid turbidimetric assay for plasma fibrinogen: a clinical evaluation.

JOSEY WE, LEVY ED.

Obstet Gynecol. 1962 Sep;20:354-8. No abstract available.

PMID:
14452543
44.

Treatment of blastomycosis with stilbamidine.

PARISER H, LEVY ED, RAWSON AJ.

J Am Med Assoc. 1953 May 9;152(2):129-30. No abstract available.

PMID:
13034545

Supplemental Content

Support Center