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Items: 1 to 50 of 109

1.

[Laparoscopy in emergency abdominal surgery].

Samsonov VT, Ermolov AS, Gulyaev AA, Yartsev PA, Levitsky VD, Rogal MM.

Khirurgiia (Mosk). 2019;(9):32-37. doi: 10.17116/hirurgia201909132. Russian.

PMID:
31532164
2.

Architecture of Promoters of House-Keeping Genes in Polytene Chromosome Interbands of Drosophila melanogaster.

Zykova TY, Levitsky VG, Zhimulev IF.

Dokl Biochem Biophys. 2019 Mar;485(1):95-100. doi: 10.1134/S1607672919020029. Epub 2019 Jun 14.

PMID:
31201623
3.

Tumor-targeted 4-1BB agonists for combination with T cell bispecific antibodies as off-the-shelf therapy.

Claus C, Ferrara C, Xu W, Sam J, Lang S, Uhlenbrock F, Albrecht R, Herter S, Schlenker R, Hüsser T, Diggelmann S, Challier J, Mössner E, Hosse RJ, Hofer T, Brünker P, Joseph C, Benz J, Ringler P, Stahlberg H, Lauer M, Perro M, Chen S, Küttel C, Bhavani Mohan PL, Nicolini V, Birk MC, Ongaro A, Prince C, Gianotti R, Dugan G, Whitlow CT, Solingapuram Sai KK, Caudell DL, Burgos-Rodriguez AG, Cline JM, Hettich M, Ceppi M, Giusti AM, Crameri F, Driessen W, Morcos PN, Freimoser-Grundschober A, Levitsky V, Amann M, Grau-Richards S, von Hirschheydt T, Tournaviti S, Mølhøj M, Fauti T, Heinzelmann-Schwarz V, Teichgräber V, Colombetti S, Bacac M, Zippelius A, Klein C, Umaña P.

Sci Transl Med. 2019 Jun 12;11(496). pii: eaav5989. doi: 10.1126/scitranslmed.aav5989.

PMID:
31189721
4.

Genetic Organization of Open Chromatin Domains Situated in Polytene Chromosome Interbands in Drosophila.

Zykova TY, Popova OO, Khoroshko VA, Levitsky VG, Lavrov SA, Zhimulev IF.

Dokl Biochem Biophys. 2018 Nov;483(1):297-301. doi: 10.1134/S1607672918060078.

PMID:
30607724
5.

[Laparoscopy for perforated gastroduodenal ulcers].

Samsonov VT, Ermolov AS, Yartsev PA, Gulyaev AA, Levitsky VD, Kirsanov II.

Khirurgiia (Mosk). 2018;(10):23-26. doi: 10.17116/hirurgia201810123. Russian.

PMID:
30531732
6.

Polytene Chromosomes - A Portrait of Functional Organization of the Drosophila Genome.

Zykova TY, Levitsky VG, Belyaeva ES, Zhimulev IF.

Curr Genomics. 2018 Apr;19(3):179-191. doi: 10.2174/1389202918666171016123830. Review.

7.

Spatial specificity of auxin responses coordinates wood formation.

Brackmann K, Qi J, Gebert M, Jouannet V, Schlamp T, Grünwald K, Wallner ES, Novikova DD, Levitsky VG, Agustí J, Sanchez P, Lohmann JU, Greb T.

Nat Commun. 2018 Feb 28;9(1):875. doi: 10.1038/s41467-018-03256-2.

8.

Diversity of cis-regulatory elements associated with auxin response in Arabidopsis thaliana.

Cherenkov P, Novikova D, Omelyanchuk N, Levitsky V, Grosse I, Weijers D, Mironova V.

J Exp Bot. 2018 Jan 4;69(2):329-339. doi: 10.1093/jxb/erx254. Review.

9.

Characterization of infiltrating lymphocytes in human benign and malignant prostate tissue.

Rådestad E, Egevad L, Jorns C, Mattsson J, Sundberg B, Nava S, Ericzon BG, Henningsohn L, Levitsky V, Uhlin M.

Oncotarget. 2017 Jul 24;8(36):60257-60269. doi: 10.18632/oncotarget.19528. eCollection 2017 Sep 1.

10.

Auxin regulates functional gene groups in a fold-change-specific manner in Arabidopsis thaliana roots.

Omelyanchuk NA, Wiebe DS, Novikova DD, Levitsky VG, Klimova N, Gorelova V, Weinholdt C, Vasiliev GV, Zemlyanskaya EV, Kolchanov NA, Kochetov AV, Grosse I, Mironova VV.

Sci Rep. 2017 May 30;7(1):2489. doi: 10.1038/s41598-017-02476-8.

11.

Protein and Genetic Composition of Four Chromatin Types in Drosophila melanogaster Cell Lines.

Boldyreva LV, Goncharov FP, Demakova OV, Zykova TY, Levitsky VG, Kolesnikov NN, Pindyurin AV, Semeshin VF, Zhimulev IF.

Curr Genomics. 2017 Apr;18(2):214-226. doi: 10.2174/1389202917666160512164913.

12.

The Interplay of Chromatin Landscape and DNA-Binding Context Suggests Distinct Modes of EIN3 Regulation in Arabidopsis thaliana.

Zemlyanskaya EV, Levitsky VG, Oshchepkov DY, Grosse I, Mironova VV.

Front Plant Sci. 2017 Jan 9;7:2044. doi: 10.3389/fpls.2016.02044. eCollection 2016.

13.

Chromatin Heterogeneity and Distribution of Regulatory Elements in the Late-Replicating Intercalary Heterochromatin Domains of Drosophila melanogaster Chromosomes.

Khoroshko VA, Levitsky VG, Zykova TY, Antonenko OV, Belyaeva ES, Zhimulev IF.

PLoS One. 2016 Jun 14;11(6):e0157147. doi: 10.1371/journal.pone.0157147. eCollection 2016.

14.

Hidden heterogeneity of transcription factor binding sites: A case study of SF-1.

Levitsky VG, Oshchepkov DY, Klimova NV, Ignatieva EV, Vasiliev GV, Merkulov VM, Merkulova TI.

Comput Biol Chem. 2016 Oct;64:19-32. doi: 10.1016/j.compbiolchem.2016.04.008. Epub 2016 May 7.

PMID:
27235721
15.

The expansion of heterochromatin blocks in rye reflects the co-amplification of tandem repeats and adjacent transposable elements.

Evtushenko EV, Levitsky VG, Elisafenko EA, Gunbin KV, Belousov AI, Šafář J, Doležel J, Vershinin AV.

BMC Genomics. 2016 May 4;17:337. doi: 10.1186/s12864-016-2667-5.

16.

Meta-analysis of transcriptome data identified TGTCNN motif variants associated with the response to plant hormone auxin in Arabidopsis thaliana L.

Zemlyanskaya EV, Wiebe DS, Omelyanchuk NA, Levitsky VG, Mironova VV.

J Bioinform Comput Biol. 2016 Apr;14(2):1641009. doi: 10.1142/S0219720016410092.

PMID:
27122321
17.

Expression of inhibitory receptors on intratumoral T cells modulates the activity of a T cell-bispecific antibody targeting folate receptor.

Schreiner J, Thommen DS, Herzig P, Bacac M, Klein C, Roller A, Belousov A, Levitsky V, Savic S, Moersig W, Uhlenbrock F, Heinzelmann-Schwarz VA, Umana P, Pisa P, von Bergwelt-Baildon M, Lardinois D, Müller P, Karanikas V, Zippelius A.

Oncoimmunology. 2015 Jun 24;5(2):e1062969. eCollection 2016 Feb.

18.

Progression of benign prostatic hyperplasia is associated with pro-inflammatory mediators and chronic activation of prostate-infiltrating lymphocytes.

Norström MM, Rådestad E, Sundberg B, Mattsson J, Henningsohn L, Levitsky V, Uhlin M.

Oncotarget. 2016 Apr 26;7(17):23581-93. doi: 10.18632/oncotarget.8051.

19.

Activation of cytomegalovirus-specific CD8+ T-cell response by antibody-mediated peptide-major histocompatibility class I complexes.

Schmittnaegel M, Klein C, Levitsky V, Knoetgen H.

Oncoimmunology. 2015 May 29;5(1):e1052930. eCollection 2016.

20.

Laparoscopic Splenectomy in Patients With Spleen Injuries.

Ermolov AS, Tlibekova MA, Yartsev PA, Guliaev AA, Rogal MM, Samsonov VT, Levitsky VD, Chernysh OA.

Surg Laparosc Endosc Percutan Tech. 2015 Dec;25(6):483-6. doi: 10.1097/SLE.0000000000000207.

PMID:
26422089
21.

Human Genes Encoding Transcription Factors and Chromatin-Modifying Proteins Have Low Levels of Promoter Polymorphism: A Study of 1000 Genomes Project Data.

Ignatieva EV, Levitsky VG, Kolchanov NA.

Int J Genomics. 2015;2015:260159. doi: 10.1155/2015/260159. Epub 2015 Aug 31.

22.

Progression of Lung Cancer Is Associated with Increased Dysfunction of T Cells Defined by Coexpression of Multiple Inhibitory Receptors.

Thommen DS, Schreiner J, Müller P, Herzig P, Roller A, Belousov A, Umana P, Pisa P, Klein C, Bacac M, Fischer OS, Moersig W, Savic Prince S, Levitsky V, Karanikas V, Lardinois D, Zippelius A.

Cancer Immunol Res. 2015 Dec;3(12):1344-55. doi: 10.1158/2326-6066.CIR-15-0097. Epub 2015 Aug 7.

23.

Committing Cytomegalovirus-Specific CD8 T Cells to Eliminate Tumor Cells by Bifunctional Major Histocompatibility Class I Antibody Fusion Molecules.

Schmittnaegel M, Levitsky V, Hoffmann E, Georges G, Mundigl O, Klein C, Knoetgen H.

Cancer Immunol Res. 2015 Jul;3(7):764-76. doi: 10.1158/2326-6066.CIR-15-0037. Epub 2015 Feb 17.

24.

Computational analysis of auxin responsive elements in the Arabidopsis thaliana L. genome.

Mironova VV, Omelyanchuk NA, Wiebe DS, Levitsky VG.

BMC Genomics. 2014;15 Suppl 12:S4. doi: 10.1186/1471-2164-15-S12-S4. Epub 2014 Dec 19.

25.

Novel method to characterize immune cells from human prostate tissue.

Norström MM, Rådestad E, Stikvoort A, Egevad L, Bergqvist M, Henningsohn L, Mattsson J, Levitsky V, Uhlin M.

Prostate. 2014 Oct;74(14):1391-9. doi: 10.1002/pros.22854. Epub 2014 Aug 11.

PMID:
25111297
26.

Genetic basis of olfactory cognition: extremely high level of DNA sequence polymorphism in promoter regions of the human olfactory receptor genes revealed using the 1000 Genomes Project dataset.

Ignatieva EV, Levitsky VG, Yudin NS, Moshkin MP, Kolchanov NA.

Front Psychol. 2014 Mar 24;5:247. doi: 10.3389/fpsyg.2014.00247. eCollection 2014.

27.

Application of experimentally verified transcription factor binding sites models for computational analysis of ChIP-Seq data.

Levitsky VG, Kulakovskiy IV, Ershov NI, Oshchepkov DY, Makeev VJ, Hodgman TC, Merkulova TI.

BMC Genomics. 2014 Jan 29;15:80. doi: 10.1186/1471-2164-15-80.

28.

Laparoscopy in blunt and penetrating abdominal trauma.

Khubutiya MSh, Yartsev PA, Guliaev AA, Levitsky VD, Tlibekova MA.

Surg Laparosc Endosc Percutan Tech. 2013 Dec;23(6):507-12. doi: 10.1097/SLE.0b013e3182937c37.

PMID:
24300927
29.

Dynamics of the major histocompatibility complex class I processing and presentation pathway in the course of malaria parasite development in human hepatocytes: implications for vaccine development.

Ma J, Trop S, Baer S, Rakhmanaliev E, Arany Z, Dumoulin P, Zhang H, Romano J, Coppens I, Levitsky V, Levitskaya J.

PLoS One. 2013 Sep 25;8(9):e75321. doi: 10.1371/journal.pone.0075321. eCollection 2013.

30.

From binding motifs in ChIP-Seq data to improved models of transcription factor binding sites.

Kulakovskiy I, Levitsky V, Oshchepkov D, Bryzgalov L, Vorontsov I, Makeev V.

J Bioinform Comput Biol. 2013 Feb;11(1):1340004. doi: 10.1142/S0219720013400040. Epub 2013 Jan 16.

PMID:
23427986
31.

The roles of the monomer length and nucleotide context of plant tandem repeats in nucleosome positioning.

Levitsky VG, Babenko VN, Vershinin AV.

J Biomol Struct Dyn. 2014;32(1):115-26. doi: 10.1080/07391102.2012.755796. Epub 2013 Feb 5.

PMID:
23384242
32.

Translation efficiency in yeasts correlates with nucleosome formation in promoters.

Matushkin YG, Levitsky VG, Orlov YL, Likhoshvai VA, Kolchanov NA.

J Biomol Struct Dyn. 2013;31(1):96-102. doi: 10.1080/07391102.2012.691366. Epub 2012 Jul 18.

PMID:
22803765
33.

In silico prediction of transcriptional factor-binding sites.

Oshchepkov DY, Levitsky VG.

Methods Mol Biol. 2011;760:251-67. doi: 10.1007/978-1-61779-176-5_16.

PMID:
21780002
34.

Development of computational methods to search for FoxA transcription factor binding sites, their experimental verification and application to the analysis of ChIP-seq data.

Levitsky VG, Oshchepkov DY, Ershov NI, Bryzgalov LO, Antontseva EV, Vasiliev GV, Merkulova TI, Kolchanov NA.

Dokl Biochem Biophys. 2011 Jan-Feb;436:12-5. doi: 10.1134/S1607672911010054. Epub 2011 Mar 4. No abstract available.

PMID:
21369894
35.

Syntaxin 11 marks a distinct intracellular compartment recruited to the immunological synapse of NK cells to colocalize with cytotoxic granules.

Dabrazhynetskaya A, Ma J, Guerreiro-Cacais AO, Arany Z, Rudd E, Henter JI, Karre K, Levitskaya J, Levitsky V.

J Cell Mol Med. 2012 Jan;16(1):129-41. doi: 10.1111/j.1582-4934.2011.01280.x.

36.

B cell receptor triggering sensitizes human B cells to TRAIL-induced apoptosis.

Guerreiro-Cacais AO, Levitskaya J, Levitsky V.

J Leukoc Biol. 2010 Nov;88(5):937-45. doi: 10.1189/jlb.0510246. Epub 2010 Aug 13.

PMID:
20709941
37.

Cytotoxic T-lymphocytes secrete soluble factors that induce caspase-mediated apoptosis in glioblastoma cell lines.

Cagigi A, Nilsson A, Levitsky V, Sabri F.

J Neuroimmunol. 2010 Aug 25;225(1-2):34-42. doi: 10.1016/j.jneuroim.2010.04.009. Epub 2010 May 16.

PMID:
20483178
38.

Increased frequency and responsiveness of PSA-specific T cells after allogeneic hematopoetic stem-cell transplantation.

Uhlin M, Okas M, Karlsson H, Gertow J, Henningsohn L, Ringdén O, Kärre K, Levitsky V, Mattsson J.

Transplantation. 2009 Feb 27;87(4):467-72. doi: 10.1097/TP.0b013e3181949c16.

PMID:
19307781
39.

Modulation of the tumor cell phenotype by IFN-gamma results in resistance of uveal melanoma cells to granule-mediated lysis by cytotoxic lymphocytes.

Hallermalm K, Seki K, De Geer A, Motyka B, Bleackley RC, Jager MJ, Froelich CJ, Kiessling R, Levitsky V, Levitskaya J.

J Immunol. 2008 Mar 15;180(6):3766-74.

40.

Bioinformatical and experimental approaches to investigation of transcription factor binding sites in vertebrate genes.

Merkulova TI, Oshchepkov DY, Ignatieva EV, Ananko EA, Levitsky VG, Vasiliev GV, Klimova NV, Merkulov VM, Kolchanov NA.

Biochemistry (Mosc). 2007 Nov;72(11):1187-93. Review.

PMID:
18205600
41.

Effective transcription factor binding site prediction using a combination of optimization, a genetic algorithm and discriminant analysis to capture distant interactions.

Levitsky VG, Ignatieva EV, Ananko EA, Turnaev II, Merkulova TI, Kolchanov NA, Hodgman TC.

BMC Bioinformatics. 2007 Dec 19;8:481.

42.

Priming of CD8+ T-cell responses after DNA immunization is impaired in TLR9- and MyD88-deficient mice.

Pavlenko M, Leder C, Moreno S, Levitsky V, Pisa P.

Vaccine. 2007 Aug 21;25(34):6341-7. Epub 2007 Jun 29.

PMID:
17628235
43.

Combined experimental and computational approaches to study the regulatory elements in eukaryotic genes.

Kolchanov NA, Merkulova TI, Ignatieva EV, Ananko EA, Oshchepkov DY, Levitsky VG, Vasiliev GV, Klimova NV, Merkulov VM, Charles Hodgman T.

Brief Bioinform. 2007 Jul;8(4):266-74. Epub 2007 Jul 12. Review.

PMID:
17627963
44.

Making the tumor-specific effectors ineffective.

Levitsky V.

Semin Cancer Biol. 2007 Aug;17(4):265-6. Epub 2007 Jun 12. No abstract available.

PMID:
17624803
45.

Mesenchymal stem cells fail to trigger effector functions of cytotoxic T lymphocytes.

Rasmusson I, Uhlin M, Le Blanc K, Levitsky V.

J Leukoc Biol. 2007 Oct;82(4):887-93. Epub 2007 Jul 3.

PMID:
17609339
46.

A molecular link between malaria and Epstein-Barr virus reactivation.

Chêne A, Donati D, Guerreiro-Cacais AO, Levitsky V, Chen Q, Falk KI, Orem J, Kironde F, Wahlgren M, Bejarano MT.

PLoS Pathog. 2007 Jun;3(6):e80.

47.
48.

Cytotoxic T lymphocytes induce caspase-dependent and -independent cell death in neuroblastomas in a MHC-nonrestricted fashion.

De Geer A, Kiessling R, Levitsky V, Levitskaya J.

J Immunol. 2006 Dec 1;177(11):7540-50.

49.
50.

Is the activity of partially agonistic MHC:peptide ligands dependent on the quality of immunological help?

Uhlin M, Masucci M, Levitsky V.

Scand J Immunol. 2006 Dec;64(6):581-7. Review.

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