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Items: 1 to 50 of 75

1.

SPRI Beads-based Size Selection in the Range of 2-10kb.

Stortchevoi A, Kamelamela N, Levine SS.

J Biomol Tech. 2020 Jan 6. pii: jbt.20-3101-002. doi: 10.7171/jbt.20-3101-002. [Epub ahead of print]

3.

GBIRG Bioinformatics Core Survey Highlights the Challenges Facing Data Analysis Facilities.

Dragon J, Hutchin J, Riva A, Settles ML, Sui SH, Thimmapuram J, Levine S.

J Biomol Tech. 2019 Dec;30(Suppl):S51.

4.

Cross Site Evaluation of Sanger Sequencing Dye Chemistries.

Podnar JW, Kolling FW, Zeller MJ, Zhang Y, Thimmapuram J, Alekseyev YO, Deiulio A, Niece J, Deiderick H, Fan J, Xuei X, Pantano L, Levine SS, Herbert ZT, Adams M, Kieleczawa J.

J Biomol Tech. 2019 Dec;30(Suppl):S46.

5.

Single-cell transcriptomic profiling of the aging mouse brain.

Ximerakis M, Lipnick SL, Innes BT, Simmons SK, Adiconis X, Dionne D, Mayweather BA, Nguyen L, Niziolek Z, Ozek C, Butty VL, Isserlin R, Buchanan SM, Levine SS, Regev A, Bader GD, Levin JZ, Rubin LL.

Nat Neurosci. 2019 Oct;22(10):1696-1708. doi: 10.1038/s41593-019-0491-3. Epub 2019 Sep 24.

PMID:
31551601
6.

Ketone Body Signaling Mediates Intestinal Stem Cell Homeostasis and Adaptation to Diet.

Cheng CW, Biton M, Haber AL, Gunduz N, Eng G, Gaynor LT, Tripathi S, Calibasi-Kocal G, Rickelt S, Butty VL, Moreno-Serrano M, Iqbal AM, Bauer-Rowe KE, Imada S, Ulutas MS, Mylonas C, Whary MT, Levine SS, Basbinar Y, Hynes RO, Mino-Kenudson M, Deshpande V, Boyer LA, Fox JG, Terranova C, Rai K, Piwnica-Worms H, Mihaylova MM, Regev A, Yilmaz ÖH.

Cell. 2019 Aug 22;178(5):1115-1131.e15. doi: 10.1016/j.cell.2019.07.048.

PMID:
31442404
7.

H3K27me3-mediated silencing of structural genes is required for zebrafish heart regeneration.

Ben-Yair R, Butty VL, Busby M, Qiu Y, Levine SS, Goren A, Boyer LA, Burns CG, Burns CE.

Development. 2019 Oct 9;146(19). pii: dev178632. doi: 10.1242/dev.178632.

PMID:
31427288
8.

HRI coordinates translation necessary for protein homeostasis and mitochondrial function in erythropoiesis.

Zhang S, Macias-Garcia A, Ulirsch JC, Velazquez J, Butty VL, Levine SS, Sankaran VG, Chen JJ.

Elife. 2019 Apr 29;8. pii: e46976. doi: 10.7554/eLife.46976.

9.

Stabilization of the Max Homodimer with a Small Molecule Attenuates Myc-Driven Transcription.

Struntz NB, Chen A, Deutzmann A, Wilson RM, Stefan E, Evans HL, Ramirez MA, Liang T, Caballero F, Wildschut MHE, Neel DV, Freeman DB, Pop MS, McConkey M, Muller S, Curtin BH, Tseng H, Frombach KR, Butty VL, Levine SS, Feau C, Elmiligy S, Hong JA, Lewis TA, Vetere A, Clemons PA, Malstrom SE, Ebert BL, Lin CY, Felsher DW, Koehler AN.

Cell Chem Biol. 2019 May 16;26(5):711-723.e14. doi: 10.1016/j.chembiol.2019.02.009. Epub 2019 Mar 14.

PMID:
30880155
10.

Global transcriptional regulation of innate immunity by ATF-7 in C. elegans.

Fletcher M, Tillman EJ, Butty VL, Levine SS, Kim DH.

PLoS Genet. 2019 Feb 21;15(2):e1007830. doi: 10.1371/journal.pgen.1007830. eCollection 2019 Feb.

11.

Encapsulated miR-200c and Nkx2.1 in a nuclear/mitochondria transcriptional regulatory network of non-metastatic and metastatic lung cancer cells.

D'Almeida O, Mothar O, Bondzie EA, Lieumo Y, Tagne L, Gupta S, Volkert T, Levine S, Tagne JB.

BMC Cancer. 2019 Feb 11;19(1):136. doi: 10.1186/s12885-019-5337-6.

12.

Cross-site comparison of ribosomal depletion kits for Illumina RNAseq library construction.

Herbert ZT, Kershner JP, Butty VL, Thimmapuram J, Choudhari S, Alekseyev YO, Fan J, Podnar JW, Wilcox E, Gipson J, Gillaspy A, Jepsen K, BonDurant SS, Morris K, Berkeley M, LeClerc A, Simpson SD, Sommerville G, Grimmett L, Adams M, Levine SS.

BMC Genomics. 2018 Mar 15;19(1):199. doi: 10.1186/s12864-018-4585-1.

13.

In Vitro Culture, Drug Sensitivity, and Transcriptome of Plasmodium Vivax Hypnozoites.

Gural N, Mancio-Silva L, Miller AB, Galstian A, Butty VL, Levine SS, Patrapuvich R, Desai SP, Mikolajczak SA, Kappe SHI, Fleming HE, March S, Sattabongkot J, Bhatia SN.

Cell Host Microbe. 2018 Mar 14;23(3):395-406.e4. doi: 10.1016/j.chom.2018.01.002. Epub 2018 Feb 22.

14.

Host proteostasis modulates influenza evolution.

Phillips AM, Gonzalez LO, Nekongo EE, Ponomarenko AI, McHugh SM, Butty VL, Levine SS, Lin YS, Mirny LA, Shoulders MD.

Elife. 2017 Sep 26;6. pii: e28652. doi: 10.7554/eLife.28652.

15.

The Hox proteins Ubx and AbdA collaborate with the transcription pausing factor M1BP to regulate gene transcription.

Zouaz A, Auradkar A, Delfini MC, Macchi M, Barthez M, Ela Akoa S, Bastianelli L, Xie G, Deng WM, Levine SS, Graba Y, Saurin AJ.

EMBO J. 2017 Oct 2;36(19):2887-2906. doi: 10.15252/embj.201695751. Epub 2017 Sep 4.

16.

Mutational spectra of aflatoxin B1 in vivo establish biomarkers of exposure for human hepatocellular carcinoma.

Chawanthayatham S, Valentine CC 3rd, Fedeles BI, Fox EJ, Loeb LA, Levine SS, Slocum SL, Wogan GN, Croy RG, Essigmann JM.

Proc Natl Acad Sci U S A. 2017 Apr 11;114(15):E3101-E3109. doi: 10.1073/pnas.1700759114. Epub 2017 Mar 28.

17.

Monitoring Error Rates In Illumina Sequencing.

Manley LJ, Ma D, Levine SS.

J Biomol Tech. 2016 Dec;27(4):125-128. Epub 2016 Sep 16.

18.

RNA polymerase II promoter-proximal pausing in mammalian long non-coding genes.

Bunch H, Lawney BP, Burkholder A, Ma D, Zheng X, Motola S, Fargo DC, Levine SS, Wang YE, Hu G.

Genomics. 2016 Aug;108(2):64-77. doi: 10.1016/j.ygeno.2016.07.003. Epub 2016 Jul 16.

19.

Transportable, Chemical Genetic Methodology for the Small Molecule-Mediated Inhibition of Heat Shock Factor 1.

Moore CL, Dewal MB, Nekongo EE, Santiago S, Lu NB, Levine SS, Shoulders MD.

ACS Chem Biol. 2016 Jan 15;11(1):200-10. doi: 10.1021/acschembio.5b00740. Epub 2015 Nov 19.

20.

Next-generation sequencing reveals the biological significance of the N(2),3-ethenoguanine lesion in vivo.

Chang SC, Fedeles BI, Wu J, Delaney JC, Li D, Zhao L, Christov PP, Yau E, Singh V, Jost M, Drennan CL, Marnett LJ, Rizzo CJ, Levine SS, Guengerich FP, Essigmann JM.

Nucleic Acids Res. 2015 Jun 23;43(11):5489-500. doi: 10.1093/nar/gkv243. Epub 2015 Apr 2.

21.

Diverse cell stresses induce unique patterns of tRNA up- and down-regulation: tRNA-seq for quantifying changes in tRNA copy number.

Pang YL, Abo R, Levine SS, Dedon PC.

Nucleic Acids Res. 2014 Dec 16;42(22):e170. doi: 10.1093/nar/gku945. Epub 2014 Oct 27.

22.

Polycomb Repressive Complex 2 regulates lineage fidelity during embryonic stem cell differentiation.

Thornton SR, Butty VL, Levine SS, Boyer LA.

PLoS One. 2014 Oct 21;9(10):e110498. doi: 10.1371/journal.pone.0110498. eCollection 2014.

23.

TRIM28 regulates RNA polymerase II promoter-proximal pausing and pause release.

Bunch H, Zheng X, Burkholder A, Dillon ST, Motola S, Birrane G, Ebmeier CC, Levine S, Fargo D, Hu G, Taatjes DJ, Calderwood SK.

Nat Struct Mol Biol. 2014 Oct;21(10):876-83. doi: 10.1038/nsmb.2878. Epub 2014 Aug 31.

24.

Genomic mapping of phosphorothioates reveals partial modification of short consensus sequences.

Cao B, Chen C, DeMott MS, Cheng Q, Clark TA, Xiong X, Zheng X, Butty V, Levine SS, Yuan G, Boitano M, Luong K, Song Y, Zhou X, Deng Z, Turner SW, Korlach J, You D, Wang L, Chen S, Dedon PC.

Nat Commun. 2014 Jun 5;5:3951. doi: 10.1038/ncomms4951.

25.

Guidelines for the Safe Preparation of Sterile Compounds: Results of the ISMP Sterile Preparation Compounding Safety Summit of October 2011.

Rich DS, Fricker MP Jr, Cohen MR, Levine SR.

Hosp Pharm. 2013 Apr;48(4):282-94. doi: 10.1310/hpj4804-282.test.

26.

Arsenic exposure perturbs the gut microbiome and its metabolic profile in mice: an integrated metagenomics and metabolomics analysis.

Lu K, Abo RP, Schlieper KA, Graffam ME, Levine S, Wishnok JS, Swenberg JA, Tannenbaum SR, Fox JG.

Environ Health Perspect. 2014 Mar;122(3):284-91. doi: 10.1289/ehp.1307429. Epub 2014 Jan 10.

27.

Gut microbiome perturbations induced by bacterial infection affect arsenic biotransformation.

Lu K, Cable PH, Abo RP, Ru H, Graffam ME, Schlieper KA, Parry NM, Levine S, Bodnar WM, Wishnok JS, Styblo M, Swenberg JA, Fox JG, Tannenbaum SR.

Chem Res Toxicol. 2013 Dec 16;26(12):1893-903. doi: 10.1021/tx4002868. Epub 2013 Nov 18.

28.

H2A.Z acidic patch couples chromatin dynamics to regulation of gene expression programs during ESC differentiation.

Subramanian V, Mazumder A, Surface LE, Butty VL, Fields PA, Alwan A, Torrey L, Thai KK, Levine SS, Bathe M, Boyer LA.

PLoS Genet. 2013;9(8):e1003725. doi: 10.1371/journal.pgen.1003725. Epub 2013 Aug 22.

29.

Lane-by-lane sequencing using Illumina's Genome Analyzer II.

Gravina MT, Lin JH, Levine SS.

Biotechniques. 2013 May;54(5):265-9. doi: 10.2144/000114032.

30.

Dynamic and coordinated epigenetic regulation of developmental transitions in the cardiac lineage.

Wamstad JA, Alexander JM, Truty RM, Shrikumar A, Li F, Eilertson KE, Ding H, Wylie JN, Pico AR, Capra JA, Erwin G, Kattman SJ, Keller GM, Srivastava D, Levine SS, Pollard KS, Holloway AK, Boyer LA, Bruneau BG.

Cell. 2012 Sep 28;151(1):206-20. doi: 10.1016/j.cell.2012.07.035. Epub 2012 Sep 12.

31.

Home care program for patients at high risk of hospitalization.

Levine S, Steinman BA, Attaway K, Jung T, Enguidanos S.

Am J Manag Care. 2012 Aug 1;18(8):e269-76.

32.

Increased generation of TRAP expressing multinucleated giant cells in patients with granulomatosis with polyangiitis.

Park JK, Askin F, Giles JT, Halushka MK, Rosen A, Levine SM.

PLoS One. 2012;7(8):e42659. doi: 10.1371/journal.pone.0042659. Epub 2012 Aug 8.

33.

Admixture and recombination among Toxoplasma gondii lineages explain global genome diversity.

Minot S, Melo MB, Li F, Lu D, Niedelman W, Levine SS, Saeij JP.

Proc Natl Acad Sci U S A. 2012 Aug 14;109(33):13458-63. doi: 10.1073/pnas.1117047109. Epub 2012 Jul 30.

34.

Persistent or new onset microscopic hematuria in patients with small vessel vasculitis in remission: findings on renal biopsy.

Geetha D, Seo P, Ellis C, Kuperman M, Levine SM.

J Rheumatol. 2012 Jul;39(7):1413-7. doi: 10.3899/jrheum.111608. Epub 2012 Jun 1.

PMID:
22660803
35.

A medical resident post-discharge phone call study.

Weisman DS, Bashir L, Mehta A, Bhatia L, Levine SM, Mete M, Padmore JS.

Hosp Pract (1995). 2012 Apr;40(2):138-46. doi: 10.3810/hp.2012.04.979.

PMID:
22615088
36.

Falling through the cracks of vasculitis classification-a report of three patients.

Havill JP, Levine SM, Kuperman M, Hellmann DB, Geetha D.

NDT Plus. 2011 Oct;4(5):327-30. doi: 10.1093/ndtplus/sfr054. Epub 2011 Apr 14. No abstract available.

37.

miR-132, an experience-dependent microRNA, is essential for visual cortex plasticity.

Mellios N, Sugihara H, Castro J, Banerjee A, Le C, Kumar A, Crawford B, Strathmann J, Tropea D, Levine SS, Edbauer D, Sur M.

Nat Neurosci. 2011 Sep 4;14(10):1240-2. doi: 10.1038/nn.2909.

38.

Medication safety in neonates.

Dabliz R, Levine S.

Am J Perinatol. 2012 Jan;29(1):49-56. doi: 10.1055/s-0031-1285831. Epub 2011 Aug 22. Review.

PMID:
21861251
39.

Paraprotein and cryoglobulin-associated medium-vessel vasculitis.

Levine SM, Gelber AC.

J Rheumatol. 2011 Aug;38(8):1697-8. doi: 10.3899/jrheum.100879. No abstract available.

PMID:
21807787
40.

High-dose cyclophosphamide without stem cell rescue for the treatment of refractory Behcet's disease.

Henderson CF, Brodsky RA, Jones RJ, Levine SM.

Semin Arthritis Rheum. 2011 Oct;41(2):301-4. doi: 10.1016/j.semarthrit.2010.12.002. Epub 2011 Feb 3.

41.

Enhancing cost-effective care with a patient-centric chronic obstructive pulmonary disease program.

Chuang C, Levine SH, Rich J.

Popul Health Manag. 2011 Jun;14(3):133-6. doi: 10.1089/pop.2010.0015. Epub 2011 Jan 8.

PMID:
21214417
42.

Mediator and cohesin connect gene expression and chromatin architecture.

Kagey MH, Newman JJ, Bilodeau S, Zhan Y, Orlando DA, van Berkum NL, Ebmeier CC, Goossens J, Rahl PB, Levine SS, Taatjes DJ, Dekker J, Young RA.

Nature. 2010 Sep 23;467(7314):430-5. doi: 10.1038/nature09380. Epub 2010 Aug 18. Erratum in: Nature. 2011 Apr 14;472(7342):247.

43.

Ronin/Hcf-1 binds to a hyperconserved enhancer element and regulates genes involved in the growth of embryonic stem cells.

Dejosez M, Levine SS, Frampton GM, Whyte WA, Stratton SA, Barton MC, Gunaratne PH, Young RA, Zwaka TP.

Genes Dev. 2010 Jul 15;24(14):1479-84. doi: 10.1101/gad.1935210. Epub 2010 Jun 25.

44.

More than meets the eye.

Manno RL, Levine SM, Gelber AC.

Semin Arthritis Rheum. 2011 Feb;40(4):324-9. doi: 10.1016/j.semarthrit.2010.03.004. Epub 2010 Jun 11.

45.

Transcription of proteinase 3 and related myelopoiesis genes in peripheral blood mononuclear cells of patients with active Wegener's granulomatosis.

Cheadle C, Berger AE, Andrade F, James R, Johnson K, Watkins T, Park JK, Chen YC, Ehrlich E, Mullins M, Chrest F, Barnes KC, Levine SM.

Arthritis Rheum. 2010 Jun;62(6):1744-54. doi: 10.1002/art.27398.

46.

Pulse versus daily oral cyclophosphamide in ANCA-associated vasculitis.

Levine SM.

Ann Intern Med. 2010 Jan 5;152(1):65; author reply 65. doi: 10.7326/0003-4819-152-1-201001050-00021. No abstract available.

PMID:
20048281
47.

Effects of age on meiosis in budding yeast.

Boselli M, Rock J, Unal E, Levine SS, Amon A.

Dev Cell. 2009 Jun;16(6):844-55. doi: 10.1016/j.devcel.2009.05.013.

48.

Aberrant chromatin at genes encoding stem cell regulators in human mixed-lineage leukemia.

Guenther MG, Lawton LN, Rozovskaia T, Frampton GM, Levine SS, Volkert TL, Croce CM, Nakamura T, Canaani E, Young RA.

Genes Dev. 2008 Dec 15;22(24):3403-8. doi: 10.1101/gad.1741408.

49.

Divergent transcription from active promoters.

Seila AC, Calabrese JM, Levine SS, Yeo GW, Rahl PB, Flynn RA, Young RA, Sharp PA.

Science. 2008 Dec 19;322(5909):1849-51. doi: 10.1126/science.1162253. Epub 2008 Dec 4.

50.

H2AZ is enriched at polycomb complex target genes in ES cells and is necessary for lineage commitment.

Creyghton MP, Markoulaki S, Levine SS, Hanna J, Lodato MA, Sha K, Young RA, Jaenisch R, Boyer LA.

Cell. 2008 Nov 14;135(4):649-61. doi: 10.1016/j.cell.2008.09.056. Epub 2008 Nov 6.

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