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Items: 1 to 50 of 111

1.

Intracellular redox potential is correlated with miRNA expression in MCF7 cells under hypoxic conditions.

Johnston H, Dickinson P, Ivens A, Buck AH, Levine RD, Remacle F, Campbell CJ.

Proc Natl Acad Sci U S A. 2019 Sep 10. pii: 201909455. doi: 10.1073/pnas.1909455116. [Epub ahead of print]

PMID:
31506353
2.

Consecutive feedback-driven constitutional dynamic networks.

Yue L, Wang S, Wulf V, Lilienthal S, Remacle F, Levine RD, Willner I.

Proc Natl Acad Sci U S A. 2019 Feb 19;116(8):2843-2848. doi: 10.1073/pnas.1816670116. Epub 2019 Feb 6.

3.

Personalized disease signatures through information-theoretic compaction of big cancer data.

Vasudevan S, Flashner-Abramson E, Remacle F, Levine RD, Kravchenko-Balasha N.

Proc Natl Acad Sci U S A. 2018 Jul 24;115(30):7694-7699. doi: 10.1073/pnas.1804214115. Epub 2018 Jul 5.

4.

Intercommunication of DNA-Based Constitutional Dynamic Networks.

Yue L, Wang S, Lilienthal S, Wulf V, Remacle F, Levine RD, Willner I.

J Am Chem Soc. 2018 Jul 18;140(28):8721-8731. doi: 10.1021/jacs.8b03450. Epub 2018 Jul 2.

PMID:
29965742
5.

Time-dependent view of an isotope effect in electron-nuclear nonequilibrium dynamics with applications to N2.

Ajay JS, Komarova KG, Remacle F, Levine RD.

Proc Natl Acad Sci U S A. 2018 Jun 5;115(23):5890-5895. doi: 10.1073/pnas.1804455115. Epub 2018 May 21.

6.

Surprisal analysis of genome-wide transcript profiling identifies differentially expressed genes and pathways associated with four growth conditions in the microalga Chlamydomonas.

Bogaert KA, Manoharan-Basil SS, Perez E, Levine RD, Remacle F, Remacle C.

PLoS One. 2018 Apr 17;13(4):e0195142. doi: 10.1371/journal.pone.0195142. eCollection 2018.

7.

Addressing the Challenge of Molecular Change: An Interim Report.

Levine RD.

Annu Rev Phys Chem. 2018 Apr 20;69:1-21. doi: 10.1146/annurev-physchem-102717-010036. Epub 2018 Feb 28.

PMID:
29490207
8.

Photochemistry of highly excited states.

Levine RD.

Proc Natl Acad Sci U S A. 2017 Dec 26;114(52):13594-13596. doi: 10.1073/pnas.1718814114. Epub 2017 Nov 30. No abstract available.

9.

Coherent electronic and nuclear dynamics in a rhodamine heterodimer-DNA supramolecular complex.

Cipolloni M, Fresch B, Occhiuto I, Rukin P, Komarova KG, Cecconello A, Willner I, Levine RD, Remacle F, Collini E.

Phys Chem Chem Phys. 2017 Aug 30;19(34):23043-23051. doi: 10.1039/c7cp01334e.

PMID:
28817145
10.

Pumping and probing vibrational modulated coupled electronic coherence in HCN using short UV fs laser pulses: a 2D quantum nuclear dynamical study.

van den Wildenberg S, Mignolet B, Levine RD, Remacle F.

Phys Chem Chem Phys. 2017 Aug 2;19(30):19837-19846. doi: 10.1039/c7cp02048a.

PMID:
28726858
11.

Continuous variables logic via coupled automata using a DNAzyme cascade with feedback.

Lilienthal S, Klein M, Orbach R, Willner I, Remacle F, Levine RD.

Chem Sci. 2017 Mar 1;8(3):2161-2168. doi: 10.1039/c6sc03892a. Epub 2016 Dec 1.

12.

Implementation of Multivariable Logic Functions in Parallel by Electrically Addressing a Molecule of Three Dopants in Silicon.

Fresch B, Bocquel J, Hiluf D, Rogge S, Levine RD, Remacle F.

Chemphyschem. 2017 Jul 5;18(13):1790-1797. doi: 10.1002/cphc.201700222. Epub 2017 May 29.

PMID:
28470997
13.

Implementation of Probabilistic Algorithms by Multi-chromophoric Molecular Networks with Application to Multiple Travelling Pathways.

Fresch B, Remacle F, Levine RD.

Chemphyschem. 2017 Jul 5;18(13):1782-1789. doi: 10.1002/cphc.201700228. Epub 2017 May 23.

PMID:
28440557
14.

A Probabilistic Finite State Logic Machine Realized Experimentally on a Single Dopant Atom.

Fresch B, Bocquel J, Rogge S, Levine RD, Remacle F.

Nano Lett. 2017 Mar 8;17(3):1846-1852. doi: 10.1021/acs.nanolett.6b05149. Epub 2017 Feb 21.

PMID:
28211693
15.

Nuclear Motion Driven Ultrafast Photodissociative Charge Transfer of the PENNA Cation: An Experimental and Computational Study.

Sun S, Mignolet B, Fan L, Li W, Levine RD, Remacle F.

J Phys Chem A. 2017 Feb 23;121(7):1442-1447. doi: 10.1021/acs.jpca.6b12310. Epub 2017 Feb 13.

PMID:
28135094
16.

Intercellular signaling through secreted proteins induces free-energy gradient-directed cell movement.

Kravchenko-Balasha N, Shin YS, Sutherland A, Levine RD, Heath JR.

Proc Natl Acad Sci U S A. 2016 May 17;113(20):5520-5. doi: 10.1073/pnas.1602171113. Epub 2016 May 2.

17.

A Thermodynamic-Based Interpretation of Protein Expression Heterogeneity in Different Glioblastoma Multiforme Tumors Identifies Tumor-Specific Unbalanced Processes.

Kravchenko-Balasha N, Johnson H, White FM, Heath JR, Levine RD.

J Phys Chem B. 2016 Jul 7;120(26):5990-7. doi: 10.1021/acs.jpcb.6b01692. Epub 2016 Apr 12.

18.

Probing in Space and Time the Nuclear Motion Driven by Nonequilibrium Electronic Dynamics in Ultrafast Pumped N2.

Ajay J, Šmydke J, Remacle F, Levine RD.

J Phys Chem A. 2016 May 19;120(19):3335-42. doi: 10.1021/acs.jpca.6b00165. Epub 2016 Mar 3.

PMID:
26937745
19.

Quantum Nuclear Dynamics Pumped and Probed by Ultrafast Polarization Controlled Steering of a Coherent Electronic State in LiH.

Nikodem A, Levine RD, Remacle F.

J Phys Chem A. 2016 May 19;120(19):3343-52. doi: 10.1021/acs.jpca.6b00140. Epub 2016 Mar 9.

PMID:
26928262
20.

Critical Points in Tumorigenesis: A Carcinogen-Initiated Phase Transition Analyzed via Single-Cell Proteomics.

Poovathingal SK, Kravchenko-Balasha N, Shin YS, Levine RD, Heath JR.

Small. 2016 Mar;12(11):1425-31. doi: 10.1002/smll.201501178. Epub 2016 Jan 18.

21.

Statistical thermodynamics of transcription profiles in normal development and tumorigeneses in cohorts of patients.

Remacle F, Levine RD.

Eur Biophys J. 2015 Dec;44(8):709-26. doi: 10.1007/s00249-015-1069-y. Epub 2015 Aug 20.

PMID:
26290059
22.

Information processing in parallel through directionally resolved molecular polarization components in coherent multidimensional spectroscopy.

Yan TM, Fresch B, Levine RD, Remacle F.

J Chem Phys. 2015 Aug 14;143(6):064106. doi: 10.1063/1.4928066.

PMID:
26277126
23.

Parallel and Multivalued Logic by the Two-Dimensional Photon-Echo Response of a Rhodamine−DNA Complex.

Fresch B, Cipolloni M, Ya TM, Collini E, Levine RD, Remacle F.

J Phys Chem Lett. 2015 May 7;6(9):1714-8.

24.

Metabolomic analysis of the green microalga Chlamydomonas reinhardtii cultivated under day/night conditions.

Willamme R, Alsafra Z, Arumugam R, Eppe G, Remacle F, Levine RD, Remacle C.

J Biotechnol. 2015 Dec 10;215:20-6. doi: 10.1016/j.jbiotec.2015.04.013. Epub 2015 May 2.

PMID:
25941156
25.

Coherent electronic wave packet motion in C(60) controlled by the waveform and polarization of few-cycle laser fields.

Li H, Mignolet B, Wachter G, Skruszewicz S, Zherebtsov S, Süssmann F, Kessel A, Trushin SA, Kling NG, Kübel M, Ahn B, Kim D, Ben-Itzhak I, Cocke CL, Fennel T, Tiggesbäumker J, Meiwes-Broer KH, Lemell C, Burgdörfer J, Levine RD, Remacle F, Kling MF.

Phys Rev Lett. 2015 Mar 27;114(12):123004. Epub 2015 Mar 27.

PMID:
25860740
26.

Ternary DNA computing using 3 × 3 multiplication matrices.

Orbach R, Lilienthal S, Klein M, Levine RD, Remacle F, Willner I.

Chem Sci. 2015 Feb 1;6(2):1288-1292. doi: 10.1039/c4sc02930e. Epub 2014 Nov 14.

27.

[Prediction of the molecular response to pertubations from single cell measurements].

Remacle F, Levine RD.

Med Sci (Paris). 2014 Dec;30(12):1129-35. doi: 10.1051/medsci/20143012016. Epub 2014 Dec 24. Review. French.

28.

Computational surprisal analysis speeds-up genomic characterization of cancer processes.

Kravchenko-Balasha N, Simon S, Levine RD, Remacle F, Exman I.

PLoS One. 2014 Nov 18;9(11):e108549. doi: 10.1371/journal.pone.0108549. eCollection 2014.

29.

Massive isotopic effect in vacuum UV photodissociation of N2 and implications for meteorite data.

Chakraborty S, Muskatel BH, Jackson TL, Ahmed M, Levine RD, Thiemens MH.

Proc Natl Acad Sci U S A. 2014 Oct 14;111(41):14704-9. doi: 10.1073/pnas.1410440111. Epub 2014 Sep 29.

30.

Surprisal analysis characterizes the free energy time course of cancer cells undergoing epithelial-to-mesenchymal transition.

Zadran S, Arumugam R, Herschman H, Phelps ME, Levine RD.

Proc Natl Acad Sci U S A. 2014 Sep 9;111(36):13235-40. doi: 10.1073/pnas.1414714111. Epub 2014 Aug 25.

31.

Electronic dynamics by ultrafast pump photoelectron detachment probed by ionization: a dynamical simulation of negative-neutral-positive in LiH(-).

Mignolet B, Levine RD, Remacle F.

J Phys Chem A. 2014 Aug 21;118(33):6721-9. doi: 10.1021/jp504592f. Epub 2014 Jun 27.

PMID:
24936939
32.

Glioblastoma cellular architectures are predicted through the characterization of two-cell interactions.

Kravchenko-Balasha N, Wang J, Remacle F, Levine RD, Heath JR.

Proc Natl Acad Sci U S A. 2014 Apr 29;111(17):6521-6. doi: 10.1073/pnas.1404462111. Epub 2014 Apr 14.

33.

miRNA and mRNA cancer signatures determined by analysis of expression levels in large cohorts of patients.

Zadran S, Remacle F, Levine RD.

Proc Natl Acad Sci U S A. 2013 Nov 19;110(47):19160-5. doi: 10.1073/pnas.1316991110. Epub 2013 Oct 7.

34.

Molecular decision trees realized by ultrafast electronic spectroscopy.

Fresch B, Hiluf D, Collini E, Levine RD, Remacle F.

Proc Natl Acad Sci U S A. 2013 Oct 22;110(43):17183-8. doi: 10.1073/pnas.1314978110. Epub 2013 Sep 16.

35.

Pump and probe of ultrafast charge reorganization in small peptides: a computational study through sudden ionizations.

Kuś T, Mignolet B, Levine RD, Remacle F.

J Phys Chem A. 2013 Oct 10;117(40):10513-25. doi: 10.1021/jp407295t. Epub 2013 Sep 25.

PMID:
24015765
36.

Surprisal analysis of transcripts expression levels in the presence of noise: a reliable determination of the onset of a tumor phenotype.

Gross A, Levine RD.

PLoS One. 2013 Apr 23;8(4):e61554. doi: 10.1371/journal.pone.0061554. Print 2013.

37.

Hypoxia induces a phase transition within a kinase signaling network in cancer cells.

Wei W, Shi Q, Remacle F, Qin L, Shackelford DB, Shin YS, Mischel PS, Levine RD, Heath JR.

Proc Natl Acad Sci U S A. 2013 Apr 9;110(15):E1352-60. doi: 10.1073/pnas.1303060110. Epub 2013 Mar 25.

38.

Free energy rhythms in Saccharomyces cerevisiae: a dynamic perspective with implications for ribosomal biogenesis.

Gross A, Li CM, Remacle F, Levine RD.

Biochemistry. 2013 Mar 5;52(9):1641-8. doi: 10.1021/bi3016982. Epub 2013 Feb 20.

39.

Logic reversibility and thermodynamic irreversibility demonstrated by DNAzyme-based Toffoli and Fredkin logic gates.

Orbach R, Remacle F, Levine RD, Willner I.

Proc Natl Acad Sci U S A. 2012 Dec 26;109(52):21228-33. doi: 10.1073/pnas.1219672110. Epub 2012 Dec 12.

40.

Perspectives in metabolic engineering: understanding cellular regulation towards the control of metabolic routes.

Zadran S, Levine RD.

Appl Biochem Biotechnol. 2013 Jan;169(1):55-65. doi: 10.1007/s12010-012-9951-x. Epub 2012 Nov 9. Review.

PMID:
23138337
41.

Quantitating cell-cell interaction functions with applications to glioblastoma multiforme cancer cells.

Wang J, Tham D, Wei W, Shin YS, Ma C, Ahmad H, Shi Q, Yu J, Levine RD, Heath JR.

Nano Lett. 2012 Dec 12;12(12):6101-6. doi: 10.1021/nl302748q. Epub 2012 Nov 7.

42.

Ultrafast predissociation mechanism of the 1Πu states of 14N2 and its isotopomers upon attosecond excitation from the ground state.

Muskatel BH, Remacle F, Levine RD.

J Phys Chem A. 2012 Nov 26;116(46):11311-8. doi: 10.1021/jp305354h. Epub 2012 Aug 20.

PMID:
22866960
43.

On a fundamental structure of gene networks in living cells.

Kravchenko-Balasha N, Levitzki A, Goldstein A, Rotter V, Gross A, Remacle F, Levine RD.

Proc Natl Acad Sci U S A. 2012 Mar 20;109(12):4702-7. doi: 10.1073/pnas.1200790109. Epub 2012 Mar 5.

44.

Integrated logic circuits using single-atom transistors.

Mol JA, Verduijn J, Levine RD, Remacle F, Rogge S.

Proc Natl Acad Sci U S A. 2011 Aug 23;108(34):13969-72. doi: 10.1073/pnas.1109935108. Epub 2011 Aug 1.

45.

Protein signaling networks from single cell fluctuations and information theory profiling.

Shin YS, Remacle F, Fan R, Hwang K, Wei W, Ahmad H, Levine RD, Heath JR.

Biophys J. 2011 May 18;100(10):2378-86. doi: 10.1016/j.bpj.2011.04.025.

46.

Stereocontrol of attosecond time-scale electron dynamics in ABCU using ultrafast laser pulses: a computational study.

Mignolet B, Gijsbertsen A, Vrakking MJ, Levine RD, Remacle F.

Phys Chem Chem Phys. 2011 May 14;13(18):8331-44. doi: 10.1039/c1cp20094a. Epub 2011 Apr 12.

PMID:
21487598
47.

On the strong and selective isotope effect in the UV excitation of N2 with implications toward the nebula and Martian atmosphere.

Muskatel BH, Remacle F, Thiemens MH, Levine RD.

Proc Natl Acad Sci U S A. 2011 Apr 12;108(15):6020-5. doi: 10.1073/pnas.1102767108. Epub 2011 Mar 24.

48.

Convergence of logic of cellular regulation in different premalignant cells by an information theoretic approach.

Kravchenko-Balasha N, Remacle F, Gross A, Rotter V, Levitzki A, Levine RD.

BMC Syst Biol. 2011 Mar 16;5:42. doi: 10.1186/1752-0509-5-42.

49.

All-DNA finite-state automata with finite memory.

Wang ZG, Elbaz J, Remacle F, Levine RD, Willner I.

Proc Natl Acad Sci U S A. 2010 Dec 21;107(51):21996-2001. doi: 10.1073/pnas.1015858107. Epub 2010 Dec 6.

50.

DNA computing circuits using libraries of DNAzyme subunits.

Elbaz J, Lioubashevski O, Wang F, Remacle F, Levine RD, Willner I.

Nat Nanotechnol. 2010 Jun;5(6):417-22. doi: 10.1038/nnano.2010.88. Epub 2010 May 30. Erratum in: Nat Nanotechnol. 2011 Mar;6(3):190.

PMID:
20512129

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