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Items: 23

1.

BRCA Share: A Collection of Clinical BRCA Gene Variants.

Béroud C, Letovsky SI, Braastad CD, Caputo SM, Beaudoux O, Bignon YJ, Bressac-De Paillerets B, Bronner M, Buell CM, Collod-Béroud G, Coulet F, Derive N, Divincenzo C, Elzinga CD, Garrec C, Houdayer C, Karbassi I, Lizard S, Love A, Muller D, Nagan N, Nery CR, Rai G, Revillion F, Salgado D, Sévenet N, Sinilnikova O, Sobol H, Stoppa-Lyonnet D, Toulas C, Trautman E, Vaur D, Vilquin P, Weymouth KS, Willis A; Laboratory Corporation of America Variant Classification Group; Quest Diagnostics Variant Classification Group; UNICANCER Genetic Group BRCA Laboratory Network, Eisenberg M, Strom CM.

Hum Mutat. 2016 Dec;37(12):1318-1328. doi: 10.1002/humu.23113. Epub 2016 Sep 28.

2.

Exploring the landscape of pathogenic genetic variation in the ExAC population database: insights of relevance to variant classification.

Song W, Gardner SA, Hovhannisyan H, Natalizio A, Weymouth KS, Chen W, Thibodeau I, Bogdanova E, Letovsky S, Willis A, Nagan N.

Genet Med. 2016 Aug;18(8):850-4. doi: 10.1038/gim.2015.180. Epub 2015 Dec 17.

PMID:
26681313
3.

The COMBREX project: design, methodology, and initial results.

Anton BP, Chang YC, Brown P, Choi HP, Faller LL, Guleria J, Hu Z, Klitgord N, Levy-Moonshine A, Maksad A, Mazumdar V, McGettrick M, Osmani L, Pokrzywa R, Rachlin J, Swaminathan R, Allen B, Housman G, Monahan C, Rochussen K, Tao K, Bhagwat AS, Brenner SE, Columbus L, de Crécy-Lagard V, Ferguson D, Fomenkov A, Gadda G, Morgan RD, Osterman AL, Rodionov DA, Rodionova IA, Rudd KE, Söll D, Spain J, Xu SY, Bateman A, Blumenthal RM, Bollinger JM, Chang WS, Ferrer M, Friedberg I, Galperin MY, Gobeill J, Haft D, Hunt J, Karp P, Klimke W, Krebs C, Macelis D, Madupu R, Martin MJ, Miller JH, O'Donovan C, Palsson B, Ruch P, Setterdahl A, Sutton G, Tate J, Yakunin A, Tchigvintsev D, Plata G, Hu J, Greiner R, Horn D, Sjölander K, Salzberg SL, Vitkup D, Letovsky S, Segrè D, DeLisi C, Roberts RJ, Steffen M, Kasif S.

PLoS Biol. 2013;11(8):e1001638. doi: 10.1371/journal.pbio.1001638. Epub 2013 Aug 27. No abstract available.

4.

Protocol dependence of sequencing-based gene expression measurements.

Raz T, Kapranov P, Lipson D, Letovsky S, Milos PM, Thompson JF.

PLoS One. 2011 May 6;6(5):e19287. doi: 10.1371/journal.pone.0019287.

5.

RNA sequencing and quantitation using the Helicos Genetic Analysis System.

Raz T, Causey M, Jones DR, Kieu A, Letovsky S, Lipson D, Thayer E, Thompson JF, Milos PM.

Methods Mol Biol. 2011;733:37-49. doi: 10.1007/978-1-61779-089-8_3.

PMID:
21431761
6.

Aberrant overexpression of satellite repeats in pancreatic and other epithelial cancers.

Ting DT, Lipson D, Paul S, Brannigan BW, Akhavanfard S, Coffman EJ, Contino G, Deshpande V, Iafrate AJ, Letovsky S, Rivera MN, Bardeesy N, Maheswaran S, Haber DA.

Science. 2011 Feb 4;331(6017):593-6. doi: 10.1126/science.1200801. Epub 2011 Jan 13.

7.

COMBREX: a project to accelerate the functional annotation of prokaryotic genomes.

Roberts RJ, Chang YC, Hu Z, Rachlin JN, Anton BP, Pokrzywa RM, Choi HP, Faller LL, Guleria J, Housman G, Klitgord N, Mazumdar V, McGettrick MG, Osmani L, Swaminathan R, Tao KR, Letovsky S, Vitkup D, Segrè D, Salzberg SL, Delisi C, Steffen M, Kasif S.

Nucleic Acids Res. 2011 Jan;39(Database issue):D11-4. doi: 10.1093/nar/gkq1168. Epub 2010 Nov 21.

8.

Error tolerant indexing and alignment of short reads with covering template families.

Giladi E, Healy J, Myers G, Hart C, Kapranov P, Lipson D, Roels S, Thayer E, Letovsky S.

J Comput Biol. 2010 Oct;17(10):1397-1411. doi: 10.1089/cmb.2010.0005.

PMID:
20937014
9.

Quantification of the yeast transcriptome by single-molecule sequencing.

Lipson D, Raz T, Kieu A, Jones DR, Giladi E, Thayer E, Thompson JF, Letovsky S, Milos P, Causey M.

Nat Biotechnol. 2009 Jul;27(7):652-8. doi: 10.1038/nbt.1551. Epub 2009 Jul 5.

PMID:
19581875
10.

Biological process linkage networks.

Dotan-Cohen D, Letovsky S, Melkman AA, Kasif S.

PLoS One. 2009;4(4):e5313. doi: 10.1371/journal.pone.0005313. Epub 2009 Apr 23.

11.

Edge-count probabilities for the identification of local protein communities and their organization.

Farutin V, Robison K, Lightcap E, Dancik V, Ruttenberg A, Letovsky S, Pradines J.

Proteins. 2006 Mar 15;62(3):800-18.

PMID:
16372355
12.

Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution.

Richards S, Liu Y, Bettencourt BR, Hradecky P, Letovsky S, Nielsen R, Thornton K, Hubisz MJ, Chen R, Meisel RP, Couronne O, Hua S, Smith MA, Zhang P, Liu J, Bussemaker HJ, van Batenburg MF, Howells SL, Scherer SE, Sodergren E, Matthews BB, Crosby MA, Schroeder AJ, Ortiz-Barrientos D, Rives CM, Metzker ML, Muzny DM, Scott G, Steffen D, Wheeler DA, Worley KC, Havlak P, Durbin KJ, Egan A, Gill R, Hume J, Morgan MB, Miner G, Hamilton C, Huang Y, Waldron L, Verduzco D, Clerc-Blankenburg KP, Dubchak I, Noor MA, Anderson W, White KP, Clark AG, Schaeffer SW, Gelbart W, Weinstock GM, Gibbs RA.

Genome Res. 2005 Jan;15(1):1-18.

13.

Whole-genome annotation by using evidence integration in functional-linkage networks.

Karaoz U, Murali TM, Letovsky S, Zheng Y, Ding C, Cantor CR, Kasif S.

Proc Natl Acad Sci U S A. 2004 Mar 2;101(9):2888-93. Epub 2004 Feb 23.

14.

Predicting protein function from protein/protein interaction data: a probabilistic approach.

Letovsky S, Kasif S.

Bioinformatics. 2003;19 Suppl 1:i197-204.

PMID:
12855458
15.

A brain image database for structure/function analysis.

Letovsky SI, Whitehead SH, Paik CH, Miller GA, Gerber J, Herskovits EH, Fulton TK, Bryan RN.

AJNR Am J Neuroradiol. 1998 Nov-Dec;19(10):1869-77.

16.

GDB: the Human Genome Database.

Letovsky SI, Cottingham RW, Porter CJ, Li PW.

Nucleic Acids Res. 1998 Jan 1;26(1):94-9.

17.

The GDB Human Genome Database Anno 1997.

Fasman KH, Letovsky SI, Li P, Cottingham RW, Kingsbury DT.

Nucleic Acids Res. 1997 Jan 1;25(1):72-81.

18.

Improvements to the GDB Human Genome Data Base.

Fasman KH, Letovsky SI, Cottingham RW, Kingsbury DT.

Nucleic Acids Res. 1996 Jan 1;24(1):57-63.

19.

A computerized approach for morphological analysis of the corpus callosum.

Davatzikos C, Vaillant M, Resnick SM, Prince JL, Letovsky S, Bryan RN.

J Comput Assist Tomogr. 1996 Jan-Feb;20(1):88-97.

PMID:
8576488
20.

Beyond the information maze.

Letovsky S.

J Comput Biol. 1995 Winter;2(4):539-46.

PMID:
8634906
21.

Genome-related datasets within the E. coli Genetic Stock Center database.

Berlyn MB, Letovsky S.

Nucleic Acids Res. 1992 Dec 11;20(23):6143-51.

22.

COTRANS: a program for cotransduction analysis.

Berlyn MB, Letovsky S.

Genetics. 1992 May;131(1):235-41.

23.

CPROP: a rule-based program for constructing genetic maps.

Letovsky S, Berlyn MB.

Genomics. 1992 Mar;12(3):435-46.

PMID:
1559695

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