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Items: 21

1.

The Ocean Gene Atlas: exploring the biogeography of plankton genes online.

Villar E, Vannier T, Vernette C, Lescot M, Cuenca M, Alexandre A, Bachelerie P, Rosnet T, Pelletier E, Sunagawa S, Hingamp P.

Nucleic Acids Res. 2018 Jul 2;46(W1):W289-W295. doi: 10.1093/nar/gky376.

2.

Reverse transcriptase genes are highly abundant and transcriptionally active in marine plankton assemblages.

Lescot M, Hingamp P, Kojima KK, Villar E, Romac S, Veluchamy A, Boccara M, Jaillon O, Iudicone D, Bowler C, Wincker P, Claverie JM, Ogata H.

ISME J. 2016 May;10(5):1134-46. doi: 10.1038/ismej.2015.192. Epub 2015 Nov 27.

3.

In-depth study of Mollivirus sibericum, a new 30,000-y-old giant virus infecting Acanthamoeba.

Legendre M, Lartigue A, Bertaux L, Jeudy S, Bartoli J, Lescot M, Alempic JM, Ramus C, Bruley C, Labadie K, Shmakova L, Rivkina E, Couté Y, Abergel C, Claverie JM.

Proc Natl Acad Sci U S A. 2015 Sep 22;112(38):E5327-35. doi: 10.1073/pnas.1510795112. Epub 2015 Sep 8.

4.

Life-cycle modification in open oceans accounts for genome variability in a cosmopolitan phytoplankton.

von Dassow P, John U, Ogata H, Probert I, Bendif el M, Kegel JU, Audic S, Wincker P, Da Silva C, Claverie JM, Doney S, Glover DM, Flores DM, Herrera Y, Lescot M, Garet-Delmas MJ, de Vargas C.

ISME J. 2015 Jun;9(6):1365-77. doi: 10.1038/ismej.2014.221. Epub 2014 Dec 2.

5.

Thirty-thousand-year-old distant relative of giant icosahedral DNA viruses with a pandoravirus morphology.

Legendre M, Bartoli J, Shmakova L, Jeudy S, Labadie K, Adrait A, Lescot M, Poirot O, Bertaux L, Bruley C, Couté Y, Rivkina E, Abergel C, Claverie JM.

Proc Natl Acad Sci U S A. 2014 Mar 18;111(11):4274-9. doi: 10.1073/pnas.1320670111. Epub 2014 Mar 3.

6.

Pandoraviruses: amoeba viruses with genomes up to 2.5 Mb reaching that of parasitic eukaryotes.

Philippe N, Legendre M, Doutre G, Couté Y, Poirot O, Lescot M, Arslan D, Seltzer V, Bertaux L, Bruley C, Garin J, Claverie JM, Abergel C.

Science. 2013 Jul 19;341(6143):281-6. doi: 10.1126/science.1239181. Erratum in: Science. 2013 Sep 27;341(6153):1452.

7.

Genome of Phaeocystis globosa virus PgV-16T highlights the common ancestry of the largest known DNA viruses infecting eukaryotes.

Santini S, Jeudy S, Bartoli J, Poirot O, Lescot M, Abergel C, Barbe V, Wommack KE, Noordeloos AA, Brussaard CP, Claverie JM.

Proc Natl Acad Sci U S A. 2013 Jun 25;110(26):10800-5. doi: 10.1073/pnas.1303251110. Epub 2013 Jun 10.

8.

The genome sequence of Brucella pinnipedialis B2/94 sheds light on the evolutionary history of the genus Brucella.

Audic S, Lescot M, Claverie JM, Cloeckaert A, Zygmunt MS.

BMC Evol Biol. 2011 Jul 11;11:200. doi: 10.1186/1471-2148-11-200.

9.

mRNA deep sequencing reveals 75 new genes and a complex transcriptional landscape in Mimivirus.

Legendre M, Audic S, Poirot O, Hingamp P, Seltzer V, Byrne D, Lartigue A, Lescot M, Bernadac A, Poulain J, Abergel C, Claverie JM.

Genome Res. 2010 May;20(5):664-74. doi: 10.1101/gr.102582.109. Epub 2010 Apr 1.

10.

Brucella microti: the genome sequence of an emerging pathogen.

Audic S, Lescot M, Claverie JM, Scholz HC.

BMC Genomics. 2009 Aug 4;10:352. doi: 10.1186/1471-2164-10-352.

11.

The genome of Borrelia recurrentis, the agent of deadly louse-borne relapsing fever, is a degraded subset of tick-borne Borrelia duttonii.

Lescot M, Audic S, Robert C, Nguyen TT, Blanc G, Cutler SJ, Wincker P, Couloux A, Claverie JM, Raoult D, Drancourt M.

PLoS Genet. 2008 Sep 12;4(9):e1000185. doi: 10.1371/journal.pgen.1000185.

12.

Phylogeny.fr: robust phylogenetic analysis for the non-specialist.

Dereeper A, Guignon V, Blanc G, Audic S, Buffet S, Chevenet F, Dufayard JF, Guindon S, Lefort V, Lescot M, Claverie JM, Gascuel O.

Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W465-9. doi: 10.1093/nar/gkn180. Epub 2008 Apr 19.

13.

A single Banana streak virus integration event in the banana genome as the origin of infectious endogenous pararetrovirus.

Gayral P, Noa-Carrazana JC, Lescot M, Lheureux F, Lockhart BE, Matsumoto T, Piffanelli P, Iskra-Caruana ML.

J Virol. 2008 Jul;82(13):6697-710. doi: 10.1128/JVI.00212-08. Epub 2008 Apr 16.

14.

Insights into the Musa genome: syntenic relationships to rice and between Musa species.

Lescot M, Piffanelli P, Ciampi AY, Ruiz M, Blanc G, Leebens-Mack J, da Silva FR, Santos CM, D'Hont A, Garsmeur O, Vilarinhos AD, Kanamori H, Matsumoto T, Ronning CM, Cheung F, Haas BJ, Althoff R, Arbogast T, Hine E, Pappas GJ Jr, Sasaki T, Souza MT Jr, Miller RN, Glaszmann JC, Town CD.

BMC Genomics. 2008 Jan 30;9:58. doi: 10.1186/1471-2164-9-58.

15.

Annotation of a 95-kb Populus deltoides genomic sequence reveals a disease resistance gene cluster and novel class I and class II transposable elements.

Lescot M, Rombauts S, Zhang J, Aubourg S, Mathé C, Jansson S, Rouzé P, Boerjan W.

Theor Appl Genet. 2004 Jun;109(1):10-22. Epub 2004 Apr 14.

PMID:
15085260
16.

Computational approaches to identify promoters and cis-regulatory elements in plant genomes.

Rombauts S, Florquin K, Lescot M, Marchal K, Rouzé P, van de Peer Y.

Plant Physiol. 2003 Jul;132(3):1162-76. Review.

17.

Inducibility by pathogen attack and developmental regulation of the rice Ltp1 gene.

Guiderdoni E, Cordero MJ, Vignols F, Garcia-Garrido JM, Lescot M, Tharreau D, Meynard D, Ferrière N, Notteghem JL, Delseny M.

Plant Mol Biol. 2002 Aug;49(6):683-99.

PMID:
12081375
18.

A Gibbs sampling method to detect overrepresented motifs in the upstream regions of coexpressed genes.

Thijs G, Marchal K, Lescot M, Rombauts S, De Moor B, Rouzé P, Moreau Y.

J Comput Biol. 2002;9(2):447-64.

PMID:
12015892
19.

INCLUSive: integrated clustering, upstream sequence retrieval and motif sampling.

Thijs G, Moreau Y, De Smet F, Mathys J, Lescot M, Rombauts S, Rouze P, De Moor B, Marchal K.

Bioinformatics. 2002 Feb;18(2):331-2.

PMID:
11847086
20.

PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences.

Lescot M, Déhais P, Thijs G, Marchal K, Moreau Y, Van de Peer Y, Rouzé P, Rombauts S.

Nucleic Acids Res. 2002 Jan 1;30(1):325-7.

21.

A higher-order background model improves the detection of promoter regulatory elements by Gibbs sampling.

Thijs G, Lescot M, Marchal K, Rombauts S, De Moor B, Rouzé P, Moreau Y.

Bioinformatics. 2001 Dec;17(12):1113-22.

PMID:
11751219

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