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Items: 7

1.

Rare mutations in the complement regulatory gene CSMD1 are associated with male and female infertility.

Lee AS, Rusch J, Lima AC, Usmani A, Huang N, Lepamets M, Vigh-Conrad KA, Worthington RE, Mägi R, Wu X, Aston KI, Atkinson JP, Carrell DT, Hess RA, O'Bryan MK, Conrad DF.

Nat Commun. 2019 Oct 11;10(1):4626. doi: 10.1038/s41467-019-12522-w.

2.

Polygenic prediction of breast cancer: comparison of genetic predictors and implications for risk stratification.

Läll K, Lepamets M, Palover M, Esko T, Metspalu A, Tõnisson N, Padrik P, Mägi R, Fischer K.

BMC Cancer. 2019 Jun 10;19(1):557. doi: 10.1186/s12885-019-5783-1.

3.

Translating genotype data of 44,000 biobank participants into clinical pharmacogenetic recommendations: challenges and solutions.

Reisberg S, Krebs K, Lepamets M, Kals M, Mägi R, Metsalu K, Lauschke VM, Vilo J, Milani L.

Genet Med. 2019 Jun;21(6):1345-1354. doi: 10.1038/s41436-018-0337-5. Epub 2018 Oct 16.

4.

Primer3_masker: integrating masking of template sequence with primer design software.

Kõressaar T, Lepamets M, Kaplinski L, Raime K, Andreson R, Remm M.

Bioinformatics. 2018 Jun 1;34(11):1937-1938. doi: 10.1093/bioinformatics/bty036.

PMID:
29360956
5.

FastGT: an alignment-free method for calling common SNVs directly from raw sequencing reads.

Pajuste FD, Kaplinski L, Möls M, Puurand T, Lepamets M, Remm M.

Sci Rep. 2017 May 31;7(1):2537. doi: 10.1038/s41598-017-02487-5.

6.

StrainSeeker: fast identification of bacterial strains from raw sequencing reads using user-provided guide trees.

Roosaare M, Vaher M, Kaplinski L, Möls M, Andreson R, Lepamets M, Kõressaar T, Naaber P, Kõljalg S, Remm M.

PeerJ. 2017 May 18;5:e3353. doi: 10.7717/peerj.3353. eCollection 2017.

7.

GenomeTester4: a toolkit for performing basic set operations - union, intersection and complement on k-mer lists.

Kaplinski L, Lepamets M, Remm M.

Gigascience. 2015 Dec 3;4:58. doi: 10.1186/s13742-015-0097-y. eCollection 2015.

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