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Items: 43

1.

Draft genome of Thermomonospora sp. CIT 1 (Thermomonosporaceae) and in silico evidence of its functional role in filter cake biomass deconstruction.

Omori WP, Pinheiro DG, Kishi LT, Fernandes CC, Fernandes GC, Gomes-Pepe ES, Pavani CD, Lemos EGM, Souza JAM.

Genet Mol Biol. 2019 Jan-Mar;42(1):145-150. doi: 10.1590/1678-4685-GMB-2017-0376. Epub 2019 Mar 11.

2.

Bacterial communities in mining soils and surrounding areas under regeneration process in a former ore mine.

Fernandes CC, Kishi LT, Lopes EM, Omori WP, Souza JAM, Alves LMC, Lemos EGM.

Braz J Microbiol. 2018 Jul - Sep;49(3):489-502. doi: 10.1016/j.bjm.2017.12.006. Epub 2018 Feb 13.

3.

Halotolerant aminopeptidase M29 from Mesorhizobium SEMIA 3007 with biotechnological potential and its impact on biofilm synthesis.

Sierra EM, Pereira MR, Maester TC, Gomes-Pepe ES, Mendoza ER, Lemos EGM.

Sci Rep. 2017 Sep 6;7(1):10684. doi: 10.1038/s41598-017-10932-8.

4.

Draft Genome Sequence of Bradyrhizobium elkanii TnphoA 33, a Producer of Polyhydroxyalkanoates.

Lopes EM, Kishi LT, Fernandes CC, Paganelli FL, Alves LM, Lemos EG, de Souza JA.

Genome Announc. 2017 Feb 23;5(8). pii: e01502-16. doi: 10.1128/genomeA.01502-16.

5.

Characterization of novel Acidobacteria exopolysaccharides with potential industrial and ecological applications.

Kielak AM, Castellane TC, Campanharo JC, Colnago LA, Costa OY, Corradi da Silva ML, van Veen JA, Lemos EG, Kuramae EE.

Sci Rep. 2017 Jan 24;7:41193. doi: 10.1038/srep41193.

6.

Draft Genome Sequence of a Chitinophaga Strain Isolated from a Lignocellulose Biomass-Degrading Consortium.

Kishi LT, Lopes EM, Fernandes CC, Fernandes GC, Sacco LP, Carareto Alves LM, Lemos EG.

Genome Announc. 2017 Jan 19;5(3). pii: e01056-16. doi: 10.1128/genomeA.01056-16.

7.

Bg10: A Novel Metagenomics Alcohol-Tolerant and Glucose-Stimulated GH1 ß-Glucosidase Suitable for Lactose-Free Milk Preparation.

Gomes-Pepe ES, Machado Sierra EG, Pereira MR, Castellane TC, Lemos EG.

PLoS One. 2016 Dec 21;11(12):e0167932. doi: 10.1371/journal.pone.0167932. eCollection 2016.

8.

Intense Exercise and Aerobic Conditioning Associated with Chromium or L-Carnitine Supplementation Modified the Fecal Microbiota of Fillies.

Almeida ML, Feringer WH Júnior, Carvalho JR, Rodrigues IM, Jordão LR, Fonseca MG, Carneiro de Rezende AS, de Queiroz Neto A, Weese JS, Costa MC, Lemos EG, Ferraz GC.

PLoS One. 2016 Dec 9;11(12):e0167108. doi: 10.1371/journal.pone.0167108. eCollection 2016.

9.
10.

Optimized medium culture for Acidobacteria subdivision 1 strains.

Campanharo JC, Kielak AM, Castellane TCL, Kuramae EE, Lemos EGM.

FEMS Microbiol Lett. 2016 Nov 1;363(21). pii: fnw245. doi: 10.1093/femsle/fnw245.

PMID:
27810887
11.

Influence of Vinasse Application in the Structure and Composition of the Bacterial Community of the Soil under Sugarcane Cultivation.

Omori WP, de Camargo AF, Goulart KC, Lemos EG, de Souza JA.

Int J Microbiol. 2016;2016:2349514. doi: 10.1155/2016/2349514. Epub 2016 Jul 26.

12.

Kinetic characterization of a novel acid ectophosphatase from Enterobacter asburiae.

Sato VS, Galdiano Júnior RF, Rodrigues GR, Lemos EG, Pizauro Junior JM.

J Microbiol. 2016 Feb;54(2):106-13. doi: 10.1007/s12275-015-5354-3. Epub 2016 Feb 2.

PMID:
26832666
13.

Validation of absolute quantitative real-time PCR for the diagnosis of Streptococcus agalactiae in fish.

Sebastião Fde A, Lemos EG, Pilarski F.

J Microbiol Methods. 2015 Dec;119:168-75. doi: 10.1016/j.mimet.2015.10.021. Epub 2015 Oct 28.

PMID:
26519771
14.

Chemical and rheological properties of exopolysaccharides produced by four isolates of rhizobia.

Moretto C, Castellane TC, Lopes EM, Omori WP, Sacco LP, Lemos EG.

Int J Biol Macromol. 2015 Nov;81:291-8. doi: 10.1016/j.ijbiomac.2015.07.056. Epub 2015 Jul 30.

PMID:
26234581
15.

Est16, a New Esterase Isolated from a Metagenomic Library of a Microbial Consortium Specializing in Diesel Oil Degradation.

Pereira MR, Mercaldi GF, Maester TC, Balan A, Lemos EG.

PLoS One. 2015 Jul 27;10(7):e0133723. doi: 10.1371/journal.pone.0133723. eCollection 2015.

16.

Metagenomic Assembly and Draft Genome Sequence of an Uncharacterized Prevotella sp. from Nelore Rumen.

Kishi LT, de Jesus RB, Pavani CD, Lemos EG, de Souza JA.

Genome Announc. 2015 Jul 9;3(4). pii: e00723-15. doi: 10.1128/genomeA.00723-15.

17.

Evaluation of the biotechnological potential of Rhizobium tropici strains for exopolysaccharide production.

Castellane TC, Lemos MV, Lemos EG.

Carbohydr Polym. 2014 Oct 13;111:191-7. doi: 10.1016/j.carbpol.2014.04.066. Epub 2014 Apr 26.

18.

Molecular and phylogenetic characterization based on the complete genome of a virulent pathotype of Newcastle disease virus isolated in the 1970s in Brazil.

Fernandes CC, Varani AM, Lemos EG, de Miranda VF, Silva KR, Fernando FS, Montassier MF, Montassier HJ.

Infect Genet Evol. 2014 Aug;26:160-7. doi: 10.1016/j.meegid.2014.05.014. Epub 2014 May 24.

19.

Draft Genome Sequence of Bacillus thuringiensis var. thuringiensis Strain T01-328, a Brazilian Isolate That Produces a Soluble Pesticide Protein, Cry1Ia.

Varani AM, Lemos MV, Fernandes CC, Lemos EG, Alves EC, Desidério JA.

Genome Announc. 2013 Oct 10;1(5). pii: e00817-13. doi: 10.1128/genomeA.00817-13.

20.

Draft genome sequence of the nitrogen-fixing symbiotic bacterium Bradyrhizobium elkanii 587.

de Souza JA, Tieppo E, Magnani Gde S, Alves LM, Cardoso RL, Cruz LM, de Oliveira LF, Raittz RT, de Souza EM, Pedrosa Fde O, Lemos EG.

J Bacteriol. 2012 Jul;194(13):3547-8. doi: 10.1128/JB.00563-12.

21.

Genetic diversity and population differentiation of the causal agent of citrus black spot in Brazil.

Wickert E, de Goes A, de Souza A, Lemos EG.

ScientificWorldJournal. 2012;2012:368286. doi: 10.1100/2012/368286. Epub 2012 May 15.

22.

Biosurfactants production by yeasts using soybean oil and glycerol as low cost substrate.

Accorsini FR, Mutton MJ, Lemos EG, Benincasa M.

Braz J Microbiol. 2012 Jan;43(1):116-25. doi: 10.1590/S1517-838220120001000013. Epub 2012 Jun 1.

23.

A putative twin-arginine translocation system in the phytopathogenic bacterium Xylella fastidiosa.

Ciapina LP, Picchi SC, Lacroix JM, Lemos EG, Ödberg-Ferragut C.

Can J Microbiol. 2011 Feb;57(2):149-54. doi: 10.1139/w10-111.

PMID:
21326357
24.

Xylella fastidiosa gene expression analysis by DNA microarrays.

Travensolo RF, Carareto-Alves LM, Costa MV, Lopes TJ, Carrilho E, Lemos EG.

Genet Mol Biol. 2009 Apr;32(2):340-53. doi: 10.1590/S1415-47572009005000038. Epub 2009 May 1.

25.

An Evaluation of the Genetic Diversity of Xylella fastidiosa Isolated from Diseased Citrus and Coffee in São Paulo, Brazil.

Qin X, Miranda VS, Machado MA, Lemos EG, Hartung JS.

Phytopathology. 2001 Jun;91(6):599-605. doi: 10.1094/PHYTO.2001.91.6.599.

26.

Evaluation of the Genetic Diversity of Xylella fastidiosa Strains from Citrus and Coffee Hosts by Single-Nucleotide Polymorphism Markers.

Wickert E, Machado MA, Lemos EG.

Phytopathology. 2007 Dec;97(12):1543-9. doi: 10.1094/PHYTO-97-12-1543.

27.

PrimerSNP: a web tool for whole-genome selection of allele-specific and common primers of phylogenetically-related bacterial genomic sequences.

Yao J, Lin H, Van Deynze A, Doddapaneni H, Francis M, Lemos EG, Civerolo EL.

BMC Microbiol. 2008 Oct 20;8:185. doi: 10.1186/1471-2180-8-185.

28.

Cloning, expression, purification and characterization of recombinant glutathione-S-transferase from Xylella fastidiosa.

Travensolo RF, Garcia W, Muniz JR, Caruso CS, Lemos EG, Carrilho E, Araújo AP.

Protein Expr Purif. 2008 May;59(1):153-60. doi: 10.1016/j.pep.2008.01.017. Epub 2008 Feb 5.

PMID:
18331799
29.

Crystallization and preliminary X-ray diffraction analysis of a glutathione S-transferase from Xylella fastidiosa.

Garcia W, Travensolo RF, Rodrigues NC, Muniz JR, Caruso CS, Lemos EG, Araujo AP, Carrilho E.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2008 Feb 1;64(Pt 2):85-7. doi: 10.1107/S174430910706825X. Epub 2008 Jan 18.

30.

Optimal clone identifier for genomic shotgun libraries: "OC Identifier tool".

Cantão ME, Ferreira JE, Lemos EG.

Genet Mol Res. 2007 Oct 5;6(4):743-55.

31.

Whole-genome expression profiling of Xylella fastidiosa in response to growth on glucose.

Pashalidis S, Moreira LM, Zaini PA, Campanharo JC, Alves LM, Ciapina LP, Vêncio RZ, Lemos EG, Da Silva AM, Da Silva AC.

OMICS. 2005 Spring;9(1):77-90.

PMID:
15805779
32.

The genome sequence of the gram-positive sugarcane pathogen Leifsonia xyli subsp. xyli.

Monteiro-Vitorello CB, Camargo LE, Van Sluys MA, Kitajima JP, Truffi D, do Amaral AM, Harakava R, de Oliveira JC, Wood D, de Oliveira MC, Miyaki C, Takita MA, da Silva AC, Furlan LR, Carraro DM, Camarotte G, Almeida NF Jr, Carrer H, Coutinho LL, El-Dorry HA, Ferro MI, Gagliardi PR, Giglioti E, Goldman MH, Goldman GH, Kimura ET, Ferro ES, Kuramae EE, Lemos EG, Lemos MV, Mauro SM, Machado MA, Marino CL, Menck CF, Nunes LR, Oliveira RC, Pereira GG, Siqueira W, de Souza AA, Tsai SM, Zanca AS, Simpson AJ, Brumbley SM, Setúbal JC.

Mol Plant Microbe Interact. 2004 Aug;17(8):827-36.

33.

A kinetic model for Xylella fastidiosa adhesion, biofilm formation, and virulence.

Osiro D, Colnago LA, Otoboni AM, Lemos EG, de Souza AA, Coletta Filho HD, Machado MA.

FEMS Microbiol Lett. 2004 Jul 15;236(2):313-8.

34.

Comparative genomics of two Leptospira interrogans serovars reveals novel insights into physiology and pathogenesis.

Nascimento AL, Ko AI, Martins EA, Monteiro-Vitorello CB, Ho PL, Haake DA, Verjovski-Almeida S, Hartskeerl RA, Marques MV, Oliveira MC, Menck CF, Leite LC, Carrer H, Coutinho LL, Degrave WM, Dellagostin OA, El-Dorry H, Ferro ES, Ferro MI, Furlan LR, Gamberini M, Giglioti EA, Góes-Neto A, Goldman GH, Goldman MH, Harakava R, Jerônimo SM, Junqueira-de-Azevedo IL, Kimura ET, Kuramae EE, Lemos EG, Lemos MV, Marino CL, Nunes LR, de Oliveira RC, Pereira GG, Reis MS, Schriefer A, Siqueira WJ, Sommer P, Tsai SM, Simpson AJ, Ferro JA, Camargo LE, Kitajima JP, Setubal JC, Van Sluys MA.

J Bacteriol. 2004 Apr;186(7):2164-72.

35.

A nested-PCR assay for detection of Xylella fastidiosa in citrus plants and sharpshooter leafhoppers.

Ciapina LP, Carareto Alves LM, Lemos EG.

J Appl Microbiol. 2004;96(3):546-51.

36.

Analysis and functional annotation of an expressed sequence tag collection for tropical crop sugarcane.

Vettore AL, da Silva FR, Kemper EL, Souza GM, da Silva AM, Ferro MI, Henrique-Silva F, Giglioti EA, Lemos MV, Coutinho LL, Nobrega MP, Carrer H, França SC, Bacci Júnior M, Goldman MH, Gomes SL, Nunes LR, Camargo LE, Siqueira WJ, Van Sluys MA, Thiemann OH, Kuramae EE, Santelli RV, Marino CL, Targon ML, Ferro JA, Silveira HC, Marini DC, Lemos EG, Monteiro-Vitorello CB, Tambor JH, Carraro DM, Roberto PG, Martins VG, Goldman GH, de Oliveira RC, Truffi D, Colombo CA, Rossi M, de Araujo PG, Sculaccio SA, Angella A, Lima MM, de Rosa Júnior VE, Siviero F, Coscrato VE, Machado MA, Grivet L, Di Mauro SM, Nobrega FG, Menck CF, Braga MD, Telles GP, Cara FA, Pedrosa G, Meidanis J, Arruda P.

Genome Res. 2003 Dec;13(12):2725-35. Epub 2003 Nov 12.

37.

Genomics-based design of defined growth media for the plant pathogen Xylella fastidiosa.

Lemos EG, Alves LM, Campanharo JC.

FEMS Microbiol Lett. 2003 Feb 14;219(1):39-45. Erratum in: FEMS Microbiol Lett. 2004 Feb 16;231(2):299.

38.

Comparative analyses of the complete genome sequences of Pierce's disease and citrus variegated chlorosis strains of Xylella fastidiosa.

Van Sluys MA, de Oliveira MC, Monteiro-Vitorello CB, Miyaki CY, Furlan LR, Camargo LE, da Silva AC, Moon DH, Takita MA, Lemos EG, Machado MA, Ferro MI, da Silva FR, Goldman MH, Goldman GH, Lemos MV, El-Dorry H, Tsai SM, Carrer H, Carraro DM, de Oliveira RC, Nunes LR, Siqueira WJ, Coutinho LL, Kimura ET, Ferro ES, Harakava R, Kuramae EE, Marino CL, Giglioti E, Abreu IL, Alves LM, do Amaral AM, Baia GS, Blanco SR, Brito MS, Cannavan FS, Celestino AV, da Cunha AF, Fenille RC, Ferro JA, Formighieri EF, Kishi LT, Leoni SG, Oliveira AR, Rosa VE Jr, Sassaki FT, Sena JA, de Souza AA, Truffi D, Tsukumo F, Yanai GM, Zaros LG, Civerolo EL, Simpson AJ, Almeida NF Jr, Setubal JC, Kitajima JP.

J Bacteriol. 2003 Feb;185(3):1018-26.

39.

Growth optimization procedures for the phytopathogen Xylella fastidiosa.

Campanharo JC, Lemos MV, Lemos EG.

Curr Microbiol. 2003 Feb;46(2):99-102.

PMID:
12520363
40.

Comparison of the genomes of two Xanthomonas pathogens with differing host specificities.

da Silva AC, Ferro JA, Reinach FC, Farah CS, Furlan LR, Quaggio RB, Monteiro-Vitorello CB, Van Sluys MA, Almeida NF, Alves LM, do Amaral AM, Bertolini MC, Camargo LE, Camarotte G, Cannavan F, Cardozo J, Chambergo F, Ciapina LP, Cicarelli RM, Coutinho LL, Cursino-Santos JR, El-Dorry H, Faria JB, Ferreira AJ, Ferreira RC, Ferro MI, Formighieri EF, Franco MC, Greggio CC, Gruber A, Katsuyama AM, Kishi LT, Leite RP, Lemos EG, Lemos MV, Locali EC, Machado MA, Madeira AM, Martinez-Rossi NM, Martins EC, Meidanis J, Menck CF, Miyaki CY, Moon DH, Moreira LM, Novo MT, Okura VK, Oliveira MC, Oliveira VR, Pereira HA, Rossi A, Sena JA, Silva C, de Souza RF, Spinola LA, Takita MA, Tamura RE, Teixeira EC, Tezza RI, Trindade dos Santos M, Truffi D, Tsai SM, White FF, Setubal JC, Kitajima JP.

Nature. 2002 May 23;417(6887):459-63.

PMID:
12024217
41.

Transposon Tn1721 distribution among strains of Xylella fastidiosa.

Ferreira LP, Lemos EG, Lemos MV.

FEMS Microbiol Lett. 2002 Mar 5;208(2):163-8.

42.

The genome sequence of the plant pathogen Xylella fastidiosa. The Xylella fastidiosa Consortium of the Organization for Nucleotide Sequencing and Analysis.

Simpson AJ, Reinach FC, Arruda P, Abreu FA, Acencio M, Alvarenga R, Alves LM, Araya JE, Baia GS, Baptista CS, Barros MH, Bonaccorsi ED, Bordin S, Bové JM, Briones MR, Bueno MR, Camargo AA, Camargo LE, Carraro DM, Carrer H, Colauto NB, Colombo C, Costa FF, Costa MC, Costa-Neto CM, Coutinho LL, Cristofani M, Dias-Neto E, Docena C, El-Dorry H, Facincani AP, Ferreira AJ, Ferreira VC, Ferro JA, Fraga JS, França SC, Franco MC, Frohme M, Furlan LR, Garnier M, Goldman GH, Goldman MH, Gomes SL, Gruber A, Ho PL, Hoheisel JD, Junqueira ML, Kemper EL, Kitajima JP, Krieger JE, Kuramae EE, Laigret F, Lambais MR, Leite LC, Lemos EG, Lemos MV, Lopes SA, Lopes CR, Machado JA, Machado MA, Madeira AM, Madeira HM, Marino CL, Marques MV, Martins EA, Martins EM, Matsukuma AY, Menck CF, Miracca EC, Miyaki CY, Monteriro-Vitorello CB, Moon DH, Nagai MA, Nascimento AL, Netto LE, Nhani A Jr, Nobrega FG, Nunes LR, Oliveira MA, de Oliveira MC, de Oliveira RC, Palmieri DA, Paris A, Peixoto BR, Pereira GA, Pereira HA Jr, Pesquero JB, Quaggio RB, Roberto PG, Rodrigues V, de M Rosa AJ, de Rosa VE Jr, de Sá RG, Santelli RV, Sawasaki HE, da Silva AC, da Silva AM, da Silva FR, da Silva WA Jr, da Silveira JF, Silvestri ML, Siqueira WJ, de Souza AA, de Souza AP, Terenzi MF, Truffi D, Tsai SM, Tsuhako MH, Vallada H, Van Sluys MA, Verjovski-Almeida S, Vettore AL, Zago MA, Zatz M, Meidanis J, Setubal JC.

Nature. 2000 Jul 13;406(6792):151-9.

PMID:
10910347
43.

An enzyme-linked immunosorbent assay (ELISA) for the detection of antibodies against Babesia bovis in cattle.

Machado RZ, Montassier HJ, Pinto AA, Lemos EG, Machado MR, Valadão IF, Barci LG, Malheiros EB.

Vet Parasitol. 1997 Jul 15;71(1):17-26.

PMID:
9231985

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