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Items: 48

1.

Discovering cellular protein-protein interactions: Technological strategies and opportunities.

Titeca K, Lemmens I, Tavernier J, Eyckerman S.

Mass Spectrom Rev. 2019 Jan;38(1):79-111. doi: 10.1002/mas.21574. Epub 2018 Jun 29. Review.

PMID:
29957823
2.

KISS: A Mammalian Two-Hybrid Method for In Situ Analysis of Protein-Protein Interactions.

Masschaele D, Gerlo S, Lemmens I, Lievens S, Tavernier J.

Methods Mol Biol. 2018;1794:269-278. doi: 10.1007/978-1-4939-7871-7_18.

PMID:
29855964
3.

MAPPI-DAT: data management and analysis for protein-protein interaction data from the high-throughput MAPPIT cell microarray platform.

Gupta S, De Puysseleyr V, Van der Heyden J, Maddelein D, Lemmens I, Lievens S, Degroeve S, Tavernier J, Martens L.

Bioinformatics. 2017 May 1;33(9):1424-1425. doi: 10.1093/bioinformatics/btx014.

4.

Proteome-scale Binary Interactomics in Human Cells.

Lievens S, Van der Heyden J, Masschaele D, De Ceuninck L, Petta I, Gupta S, De Puysseleyr V, Vauthier V, Lemmens I, De Clercq DJ, Defever D, Vanderroost N, De Smet AS, Eyckerman S, Van Calenbergh S, Martens L, De Bosscher K, Libert C, Hill DE, Vidal M, Tavernier J.

Mol Cell Proteomics. 2016 Dec;15(12):3624-3639. Epub 2016 Nov 1.

5.

A combined binary interaction and phenotypic map of C. elegans cell polarity proteins.

Koorman T, Klompstra D, van der Voet M, Lemmens I, Ramalho JJ, Nieuwenhuize S, van den Heuvel S, Tavernier J, Nance J, Boxem M.

Nat Cell Biol. 2016 Mar;18(3):337-46. doi: 10.1038/ncb3300. Epub 2016 Jan 18.

6.

Regulation of the ryanodine receptor by anti-apoptotic Bcl-2 is independent of its BH3-domain-binding properties.

Vervliet T, Lemmens I, Welkenhuyzen K, Tavernier J, Parys JB, Bultynck G.

Biochem Biophys Res Commun. 2015 Jul 31;463(3):174-9. doi: 10.1016/j.bbrc.2015.04.131. Epub 2015 May 6.

PMID:
25957473
7.

Ryanodine receptors are targeted by anti-apoptotic Bcl-XL involving its BH4 domain and Lys87 from its BH3 domain.

Vervliet T, Lemmens I, Vandermarliere E, Decrock E, Ivanova H, Monaco G, Sorrentino V, Nadif Kasri N, Missiaen L, Martens L, De Smedt H, Leybaert L, Parys JB, Tavernier J, Bultynck G.

Sci Rep. 2015 Apr 15;5:9641. doi: 10.1038/srep09641.

8.

MAPPIT, a mammalian two-hybrid method for in-cell detection of protein-protein interactions.

Lemmens I, Lievens S, Tavernier J.

Methods Mol Biol. 2015;1278:447-55. doi: 10.1007/978-1-4939-2425-7_29.

PMID:
25859968
9.

Spatiotemporal 16p11.2 protein network implicates cortical late mid-fetal brain development and KCTD13-Cul3-RhoA pathway in psychiatric diseases.

Lin GN, Corominas R, Lemmens I, Yang X, Tavernier J, Hill DE, Vidal M, Sebat J, Iakoucheva LM.

Neuron. 2015 Feb 18;85(4):742-54. doi: 10.1016/j.neuron.2015.01.010.

10.

A proteome-scale map of the human interactome network.

Rolland T, Taşan M, Charloteaux B, Pevzner SJ, Zhong Q, Sahni N, Yi S, Lemmens I, Fontanillo C, Mosca R, Kamburov A, Ghiassian SD, Yang X, Ghamsari L, Balcha D, Begg BE, Braun P, Brehme M, Broly MP, Carvunis AR, Convery-Zupan D, Corominas R, Coulombe-Huntington J, Dann E, Dreze M, Dricot A, Fan C, Franzosa E, Gebreab F, Gutierrez BJ, Hardy MF, Jin M, Kang S, Kiros R, Lin GN, Luck K, MacWilliams A, Menche J, Murray RR, Palagi A, Poulin MM, Rambout X, Rasla J, Reichert P, Romero V, Ruyssinck E, Sahalie JM, Scholz A, Shah AA, Sharma A, Shen Y, Spirohn K, Tam S, Tejeda AO, Trigg SA, Twizere JC, Vega K, Walsh J, Cusick ME, Xia Y, Barabási AL, Iakoucheva LM, Aloy P, De Las Rivas J, Tavernier J, Calderwood MA, Hill DE, Hao T, Roth FP, Vidal M.

Cell. 2014 Nov 20;159(5):1212-1226. doi: 10.1016/j.cell.2014.10.050.

11.

Genome dynamics of the human embryonic kidney 293 lineage in response to cell biology manipulations.

Lin YC, Boone M, Meuris L, Lemmens I, Van Roy N, Soete A, Reumers J, Moisse M, Plaisance S, Drmanac R, Chen J, Speleman F, Lambrechts D, Van de Peer Y, Tavernier J, Callewaert N.

Nat Commun. 2014 Sep 3;5:4767. doi: 10.1038/ncomms5767.

12.

Kinase Substrate Sensor (KISS), a mammalian in situ protein interaction sensor.

Lievens S, Gerlo S, Lemmens I, De Clercq DJ, Risseeuw MD, Vanderroost N, De Smet AS, Ruyssinck E, Chevet E, Van Calenbergh S, Tavernier J.

Mol Cell Proteomics. 2014 Dec;13(12):3332-42. doi: 10.1074/mcp.M114.041087. Epub 2014 Aug 25.

13.

Protein interaction network of alternatively spliced isoforms from brain links genetic risk factors for autism.

Corominas R, Yang X, Lin GN, Kang S, Shen Y, Ghamsari L, Broly M, Rodriguez M, Tam S, Trigg SA, Fan C, Yi S, Tasan M, Lemmens I, Kuang X, Zhao N, Malhotra D, Michaelson JJ, Vacic V, Calderwood MA, Roth FP, Tavernier J, Horvath S, Salehi-Ashtiani K, Korkin D, Sebat J, Hill DE, Hao T, Vidal M, Iakoucheva LM.

Nat Commun. 2014 Apr 11;5:3650. doi: 10.1038/ncomms4650.

14.

Random mutagenesis MAPPIT analysis identifies binding sites for Vif and Gag in both cytidine deaminase domains of Apobec3G.

Uyttendaele I, Lavens D, Catteeuw D, Lemmens I, Bovijn C, Tavernier J, Peelman F.

PLoS One. 2012;7(9):e44143. doi: 10.1371/journal.pone.0044143. Epub 2012 Sep 10.

15.

Host-pathogen interactome mapping for HTLV-1 and -2 retroviruses.

Simonis N, Rual JF, Lemmens I, Boxus M, Hirozane-Kishikawa T, Gatot JS, Dricot A, Hao T, Vertommen D, Legros S, Daakour S, Klitgord N, Martin M, Willaert JF, Dequiedt F, Navratil V, Cusick ME, Burny A, Van Lint C, Hill DE, Tavernier J, Kettmann R, Vidal M, Twizere JC.

Retrovirology. 2012 Mar 29;9:26. doi: 10.1186/1742-4690-9-26.

16.

MAPPIT: a protein interaction toolbox built on insights in cytokine receptor signaling.

Lievens S, Peelman F, De Bosscher K, Lemmens I, Tavernier J.

Cytokine Growth Factor Rev. 2011 Oct-Dec;22(5-6):321-9. doi: 10.1016/j.cytogfr.2011.11.001. Epub 2011 Nov 25. Review.

PMID:
22119007
17.

Large-scale protein interactome mapping: strategies and opportunities.

Lievens S, Eyckerman S, Lemmens I, Tavernier J.

Expert Rev Proteomics. 2010 Oct;7(5):679-90. doi: 10.1586/epr.10.30. Review.

PMID:
20973641
18.

Strategies towards high-quality binary protein interactome maps.

Lemmens I, Lievens S, Tavernier J.

J Proteomics. 2010 Jun 16;73(8):1415-20. doi: 10.1016/j.jprot.2010.02.001. Epub 2010 Feb 12.

PMID:
20153845
19.

Mammalian two-hybrids come of age.

Lievens S, Lemmens I, Tavernier J.

Trends Biochem Sci. 2009 Nov;34(11):579-88. doi: 10.1016/j.tibs.2009.06.009. Epub 2009 Sep 26. Review.

20.

MAPPIT (mammalian protein-protein interaction trap) analysis of early steps in toll-like receptor signalling.

Ulrichts P, Lemmens I, Lavens D, Beyaert R, Tavernier J.

Methods Mol Biol. 2009;517:133-44. doi: 10.1007/978-1-59745-541-1_9.

PMID:
19378012
21.

Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network.

Simonis N, Rual JF, Carvunis AR, Tasan M, Lemmens I, Hirozane-Kishikawa T, Hao T, Sahalie JM, Venkatesan K, Gebreab F, Cevik S, Klitgord N, Fan C, Braun P, Li N, Ayivi-Guedehoussou N, Dann E, Bertin N, Szeto D, Dricot A, Yildirim MA, Lin C, de Smet AS, Kao HL, Simon C, Smolyar A, Ahn JS, Tewari M, Boxem M, Milstein S, Yu H, Dreze M, Vandenhaute J, Gunsalus KC, Cusick ME, Hill DE, Tavernier J, Roth FP, Vidal M.

Nat Methods. 2009 Jan;6(1):47-54.

22.

An empirical framework for binary interactome mapping.

Venkatesan K, Rual JF, Vazquez A, Stelzl U, Lemmens I, Hirozane-Kishikawa T, Hao T, Zenkner M, Xin X, Goh KI, Yildirim MA, Simonis N, Heinzmann K, Gebreab F, Sahalie JM, Cevik S, Simon C, de Smet AS, Dann E, Smolyar A, Vinayagam A, Yu H, Szeto D, Borick H, Dricot A, Klitgord N, Murray RR, Lin C, Lalowski M, Timm J, Rau K, Boone C, Braun P, Cusick ME, Roth FP, Hill DE, Tavernier J, Wanker EE, Barabási AL, Vidal M.

Nat Methods. 2009 Jan;6(1):83-90. doi: 10.1038/nmeth.1280. Epub 2008 Dec 7.

23.

An experimentally derived confidence score for binary protein-protein interactions.

Braun P, Tasan M, Dreze M, Barrios-Rodiles M, Lemmens I, Yu H, Sahalie JM, Murray RR, Roncari L, de Smet AS, Venkatesan K, Rual JF, Vandenhaute J, Cusick ME, Pawson T, Hill DE, Tavernier J, Wrana JL, Roth FP, Vidal M.

Nat Methods. 2009 Jan;6(1):91-7. doi: 10.1038/nmeth.1281. Epub 2008 Dec 7.

24.

MAPPIT: a versatile tool to study cytokine receptor signalling.

Lemmens I, Lievens S, Tavernier J.

Biochem Soc Trans. 2008 Dec;36(Pt 6):1448-51. doi: 10.1042/BST0361448.

PMID:
19021573
25.

High-quality binary protein interaction map of the yeast interactome network.

Yu H, Braun P, Yildirim MA, Lemmens I, Venkatesan K, Sahalie J, Hirozane-Kishikawa T, Gebreab F, Li N, Simonis N, Hao T, Rual JF, Dricot A, Vazquez A, Murray RR, Simon C, Tardivo L, Tam S, Svrzikapa N, Fan C, de Smet AS, Motyl A, Hudson ME, Park J, Xin X, Cusick ME, Moore T, Boone C, Snyder M, Roth FP, Barabási AL, Tavernier J, Hill DE, Vidal M.

Science. 2008 Oct 3;322(5898):104-10. doi: 10.1126/science.1158684. Epub 2008 Aug 21.

26.

A protein domain-based interactome network for C. elegans early embryogenesis.

Boxem M, Maliga Z, Klitgord N, Li N, Lemmens I, Mana M, de Lichtervelde L, Mul JD, van de Peut D, Devos M, Simonis N, Yildirim MA, Cokol M, Kao HL, de Smet AS, Wang H, Schlaitz AL, Hao T, Milstein S, Fan C, Tipsword M, Drew K, Galli M, Rhrissorrakrai K, Drechsel D, Koller D, Roth FP, Iakoucheva LM, Dunker AK, Bonneau R, Gunsalus KC, Hill DE, Piano F, Tavernier J, van den Heuvel S, Hyman AA, Vidal M.

Cell. 2008 Aug 8;134(3):534-45. doi: 10.1016/j.cell.2008.07.009. Erratum in: Cell. 2012 Dec 21;151(7):1633.

27.

MAPPIT (MAmmalian Protein-Protein Interaction Trap) as a tool to study HIV reverse transcriptase dimerization in intact human cells.

Pattyn E, Lavens D, Van der Heyden J, Verhee A, Lievens S, Lemmens I, Hallenberger S, Jochmans D, Tavernier J.

J Virol Methods. 2008 Oct;153(1):7-15. doi: 10.1016/j.jviromet.2008.06.021. Epub 2008 Jul 30.

PMID:
18640157
28.

Mammalian protein-protein interaction trap (MAPPIT) analysis of STAT5, CIS, and SOCS2 interactions with the growth hormone receptor.

Uyttendaele I, Lemmens I, Verhee A, De Smet AS, Vandekerckhove J, Lavens D, Peelman F, Tavernier J.

Mol Endocrinol. 2007 Nov;21(11):2821-31. Epub 2007 Jul 31.

PMID:
17666591
29.

Reverse MAPPIT detects disruptors of protein-protein interactions in human cells.

Lemmens I, Lievens S, Eyckerman S, Tavernier J.

Nat Protoc. 2006;1(1):92-7.

PMID:
17406217
30.

Two-hybrid and its recent adaptations.

Lievens S, Lemmens I, Montoye T, Eyckerman S, Tavernier J.

Drug Discov Today Technol. 2006 Autumn;3(3):317-24. doi: 10.1016/j.ddtec.2006.09.006.

PMID:
24980535
31.

Analysis of leptin signalling in hematopoietic cells using an adapted MAPPIT strategy.

Montoye T, Piessevaux J, Lavens D, Wauman J, Catteeuw D, Vandekerckhove J, Lemmens I, Tavernier J.

FEBS Lett. 2006 May 29;580(13):3301-7. Epub 2006 May 8.

32.

Reverse MAPPIT: screening for protein-protein interaction modifiers in mammalian cells.

Eyckerman S, Lemmens I, Catteeuw D, Verhee A, Vandekerckhove J, Lievens S, Tavernier J.

Nat Methods. 2005 Jun;2(6):427-33.

PMID:
15908921
33.

A systematic scan of interactions with tyrosine motifs in the erythropoietin receptor using a mammalian 2-hybrid approach.

Montoye T, Lemmens I, Catteeuw D, Eyckerman S, Tavernier J.

Blood. 2005 Jun 1;105(11):4264-71. Epub 2005 Jan 11.

34.

Heteromeric MAPPIT: a novel strategy to study modification-dependent protein-protein interactions in mammalian cells.

Lemmens I, Eyckerman S, Zabeau L, Catteeuw D, Vertenten E, Verschueren K, Huylebroeck D, Vandekerckhove J, Tavernier J.

Nucleic Acids Res. 2003 Jul 15;31(14):e75.

35.

Design and use of a mammalian protein-protein interaction trap (MAPPIT).

Eyckerman S, Lemmens I, Lievens S, Van der Heyden J, Verhee A, Vandekerckhove J, Tavernier J.

Sci STKE. 2002 Dec 10;2002(162):pl18.

PMID:
12476003
36.

MAPPIT: a cytokine receptor-based two-hybrid method in mammalian cells.

Tavernier J, Eyckerman S, Lemmens I, Van der Heyden J, Vandekerckhove J, Van Ostade X.

Clin Exp Allergy. 2002 Oct;32(10):1397-404. Review.

PMID:
12372116
37.

Design and application of a cytokine-receptor-based interaction trap.

Eyckerman S, Verhee A, der Heyden JV, Lemmens I, Ostade XV, Vandekerckhove J, Tavernier J.

Nat Cell Biol. 2001 Dec;3(12):1114-9.

PMID:
11781573
38.

Menin interacts directly with the homeobox-containing protein Pem.

Lemmens IH, Forsberg L, Pannett AA, Meyen E, Piehl F, Turner JJ, Van de Ven WJ, Thakker RV, Larsson C, Kas K.

Biochem Biophys Res Commun. 2001 Aug 17;286(2):426-31.

PMID:
11500056
39.

Molecular characterization of human and murine C11orf5, a new member of the FAUNA gene cluster.

Lemmens IH, Farnebo F, Piehl F, Merregaert J, Van de Ven WJ, Larsson C, Kas K.

Mamm Genome. 2000 Jan;11(1):78-80. No abstract available.

PMID:
10602999
40.

Characterization of the mouse Men1 gene and its expression during development.

Stewart C, Parente F, Piehl F, Farnebo F, Quincey D, Silins G, Bergman L, Carle GF, Lemmens I, Grimmond S, Xian CZ, Khodei S, Teh BT, Lagercrantz J, Siggers P, Calender A, Van de Vem V, Kas K, Weber G, Hayward N, Gaudray P, Larsson C.

Oncogene. 1998 Nov 12;17(19):2485-93.

41.

A putative human zinc-finger gene (ZFPL1) on 11q13, highly conserved in the mouse and expressed in exocrine pancreas. The European Consortium on MEN 1.

Höppener JW, De Wit MJ, Simarro-Doorten AY, Roijers JF, van Herrewaarden HM, Lips CJ, Parente F, Quincey D, Gaudray P, Khodaei S, Weber G, Teh B, Farnebo F, Larsson C, Zhang CX, Calender A, Pannett AA, Forbes SA, Bassett JH, Thakker RV, Lemmens I, Van de Ven WJ, Kas K.

Genomics. 1998 Jun 1;50(2):251-9.

PMID:
9653652
42.

Identification and molecular characterization of TM7SF2 in the FAUNA gene cluster on human chromosome 11q13.

Lemmens IH, Kas K, Merregaert J, Van de Ven WJ.

Genomics. 1998 May 1;49(3):437-42.

PMID:
9615229
43.

The timing of prehensile movements in subjects with cerebral palsy.

Steenbergen B, Hulstijn W, Lemmens IH, Meulenbroek RG.

Dev Med Child Neurol. 1998 Feb;40(2):108-14.

44.

Construction of a 1.2-Mb sequence-ready contig of chromosome 11q13 encompassing the multiple endocrine neoplasia type 1 (MEN1) gene. The European Consortium on MEN1.

Lemmens I, Merregaert J, Van de Ven WJ, Kas K, Zhang CX, Giraud S, Wautot V, Buisson N, De Witte K, Salandre J, Lenoir G, Calender A, Parente F, Quincey D, Courseaux A, Carle GF, Gaudray P, De Wit MJ, Lips CJ, Höppener JW, Khodaei S, Grant AL, Weber G, Kytölä S, Thakker RV, et al.

Genomics. 1997 Aug 15;44(1):94-100.

PMID:
9286704
45.

Identification of the multiple endocrine neoplasia type 1 (MEN1) gene. The European Consortium on MEN1.

Lemmens I, Van de Ven WJ, Kas K, Zhang CX, Giraud S, Wautot V, Buisson N, De Witte K, Salandre J, Lenoir G, Pugeat M, Calender A, Parente F, Quincey D, Gaudray P, De Wit MJ, Lips CJ, Höppener JW, Khodaei S, Grant AL, Weber G, Kytölä S, Teh BT, Farnebo F, Thakker RV, et al.

Hum Mol Genet. 1997 Jul;6(7):1177-83.

PMID:
9215690
46.

Lathyrogens and the role of collagen in the eruption of rat incisors.

Taverne AA, Lemmens IG, Tonino GJ.

Arch Oral Biol. 1986;31(2):127-31.

PMID:
3460538
47.

Immunofluorescent localization and extractability of fibronectin in human dental pulp.

van Amerongen JP, Lemmens IG, Tonino GJ.

Arch Oral Biol. 1984;29(2):93-9.

PMID:
6372762
48.

The concentration, extractability and characterization of collagen in human dental pulp.

van Amerongen JP, Lemmens IG, Tonino GJ.

Arch Oral Biol. 1983;28(4):339-45.

PMID:
6411048

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