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Items: 37

1.

Label-free quantitative proteomics in Candida yeast species: technical and biological replicates to assess data reproducibility.

Lelandais G, Denecker T, Garcia C, Danila N, Léger T, Camadro JM.

BMC Res Notes. 2019 Aug 1;12(1):470. doi: 10.1186/s13104-019-4505-8.

2.

Pixel: a content management platform for quantitative omics data.

Denecker T, Durand W, Maupetit J, Hébert C, Camadro JM, Poulain P, Lelandais G.

PeerJ. 2019 Mar 27;7:e6623. doi: 10.7717/peerj.6623. eCollection 2019.

3.

Comparative Transcriptomics Highlights New Features of the Iron Starvation Response in the Human Pathogen Candida glabrata.

Benchouaia M, Ripoche H, Sissoko M, Thiébaut A, Merhej J, Delaveau T, Fasseu L, Benaissa S, Lorieux G, Jourdren L, Le Crom S, Lelandais G, Corel E, Devaux F.

Front Microbiol. 2018 Nov 16;9:2689. doi: 10.3389/fmicb.2018.02689. eCollection 2018.

4.

Empowering the detection of ChIP-seq "basic peaks" (bPeaks) in small eukaryotic genomes with a web user-interactive interface.

Denecker T, Lelandais G.

BMC Res Notes. 2018 Oct 4;11(1):698. doi: 10.1186/s13104-018-3802-y.

5.

Meet-U: Educating through research immersion.

Abdollahi N, Albani A, Anthony E, Baud A, Cardon M, Clerc R, Czernecki D, Conte R, David L, Delaune A, Djerroud S, Fourgoux P, Guiglielmoni N, Laurentie J, Lehmann N, Lochard C, Montagne R, Myrodia V, Opuu V, Parey E, Polit L, Privé S, Quignot C, Ruiz-Cuevas M, Sissoko M, Sompairac N, Vallerix A, Verrecchia V, Delarue M, Guérois R, Ponty Y, Sacquin-Mora S, Carbone A, Froidevaux C, Le Crom S, Lespinet O, Weigt M, Abboud S, Bernardes J, Bouvier G, Dequeker C, Ferré A, Fuchs P, Lelandais G, Poulain P, Richard H, Schweke H, Laine E, Lopes A.

PLoS Comput Biol. 2018 Mar 15;14(3):e1005992. doi: 10.1371/journal.pcbi.1005992. eCollection 2018 Mar.

6.

The CCAAT-Binding Complex Controls Respiratory Gene Expression and Iron Homeostasis in Candida Glabrata.

Thiébaut A, Delaveau T, Benchouaia M, Boeri J, Garcia M, Lelandais G, Devaux F.

Sci Rep. 2017 Jun 14;7(1):3531. doi: 10.1038/s41598-017-03750-5.

7.

Acclimation of a low iron adapted Ostreococcus strain to iron limitation through cell biomass lowering.

Botebol H, Lelandais G, Six C, Lesuisse E, Meng A, Bittner L, Lecrom S, Sutak R, Lozano JC, Schatt P, Vergé V, Blain S, Bouget FY.

Sci Rep. 2017 Mar 23;7(1):327. doi: 10.1038/s41598-017-00216-6.

8.

Tma108, a putative M1 aminopeptidase, is a specific nascent chain-associated protein in Saccharomyces cerevisiae.

Delaveau T, Davoine D, Jolly A, Vallot A, Rouvière JO, Gerber A, Brochet S, Plessis M, Roquigny R, Merhej J, Leger T, Garcia C, Lelandais G, Laine E, Palancade B, Devaux F, Garcia M.

Nucleic Acids Res. 2016 Oct 14;44(18):8826-8841. Epub 2016 Aug 31.

9.

A Network of Paralogous Stress Response Transcription Factors in the Human Pathogen Candida glabrata.

Merhej J, Thiebaut A, Blugeon C, Pouch J, Ali Chaouche Mel A, Camadro JM, Le Crom S, Lelandais G, Devaux F.

Front Microbiol. 2016 May 9;7:645. doi: 10.3389/fmicb.2016.00645. eCollection 2016.

10.

Ostreococcus tauri is a new model green alga for studying iron metabolism in eukaryotic phytoplankton.

Lelandais G, Scheiber I, Paz-Yepes J, Lozano JC, Botebol H, Pilátová J, Žárský V, Léger T, Blaiseau PL, Bowler C, Bouget FY, Camadro JM, Sutak R, Lesuisse E.

BMC Genomics. 2016 May 3;17:319. doi: 10.1186/s12864-016-2666-6.

11.

ChIPseq in Yeast Species: From Chromatin Immunoprecipitation to High-Throughput Sequencing and Bioinformatics Data Analyses.

Lelandais G, Blugeon C, Merhej J.

Methods Mol Biol. 2016;1361:185-202. doi: 10.1007/978-1-4939-3079-1_11.

PMID:
26483023
12.

Fermentation and alternative respiration compensate for NADH dehydrogenase deficiency in a prokaryotic model of DJ-1-associated Parkinsonism.

Messaoudi N, Gautier V, Dairou J, Mihoub M, Lelandais G, Bouloc P, Landoulsi A, Richarme G.

Microbiology. 2015 Nov;161(11):2220-31. doi: 10.1099/mic.0.000181. Epub 2015 Sep 15.

PMID:
26377309
13.

Yap7 is a transcriptional repressor of nitric oxide oxidase in yeasts, which arose from neofunctionalization after whole genome duplication.

Merhej J, Delaveau T, Guitard J, Palancade B, Hennequin C, Garcia M, Lelandais G, Devaux F.

Mol Microbiol. 2015 Jun;96(5):951-72. doi: 10.1111/mmi.12983. Epub 2015 Mar 28.

14.

The metacaspase (Mca1p) has a dual role in farnesol-induced apoptosis in Candida albicans.

Léger T, Garcia C, Ounissi M, Lelandais G, Camadro JM.

Mol Cell Proteomics. 2015 Jan;14(1):93-108. doi: 10.1074/mcp.M114.041210. Epub 2014 Oct 27.

15.

bPeaks: a bioinformatics tool to detect transcription factor binding sites from ChIPseq data in yeasts and other organisms with small genomes.

Merhej J, Frigo A, Le Crom S, Camadro JM, Devaux F, Lelandais G.

Yeast. 2014 Oct;31(10):375-91. doi: 10.1002/yea.3031. Epub 2014 Jul 28.

16.

Global stress response in a prokaryotic model of DJ-1-associated Parkinsonism.

Messaoudi N, Gautier V, Kthiri F, Lelandais G, Mihoub M, Joseleau-Petit D, Caldas T, Bohn C, Tolosa L, Rao G, Tao K, Landoulsi A, Bouloc P, Richarme G.

J Bacteriol. 2013 Mar;195(6):1167-78. doi: 10.1128/JB.02202-12. Epub 2013 Jan 4.

17.

RNA sequencing revealed novel actors of the acquisition of drug resistance in Candida albicans.

Dhamgaye S, Bernard M, Lelandais G, Sismeiro O, Lemoine S, Coppée JY, Le Crom S, Prasad R, Devaux F.

BMC Genomics. 2012 Aug 16;13:396.

18.

Transcriptomic analyses during the transition from biomass production to lipid accumulation in the oleaginous yeast Yarrowia lipolytica.

Morin N, Cescut J, Beopoulos A, Lelandais G, Le Berre V, Uribelarrea JL, Molina-Jouve C, Nicaud JM.

PLoS One. 2011;6(11):e27966. doi: 10.1371/journal.pone.0027966. Epub 2011 Nov 22.

19.

The evolution of gene expression regulatory networks in yeasts.

Lelandais G, Goudot C, Devaux F.

C R Biol. 2011 Aug-Sep;334(8-9):655-61. doi: 10.1016/j.crvi.2011.05.014. Epub 2011 Jul 2. Review.

PMID:
21819947
20.

The reconstruction of condition-specific transcriptional modules provides new insights in the evolution of yeast AP-1 proteins.

Goudot C, Etchebest C, Devaux F, Lelandais G.

PLoS One. 2011;6(6):e20924. doi: 10.1371/journal.pone.0020924. Epub 2011 Jun 9.

21.

Comparative transcriptomics of drought responses in Populus: a meta-analysis of genome-wide expression profiling in mature leaves and root apices across two genotypes.

Cohen D, Bogeat-Triboulot MB, Tisserant E, Balzergue S, Martin-Magniette ML, Lelandais G, Ningre N, Renou JP, Tamby JP, Le Thiec D, Hummel I.

BMC Genomics. 2010 Nov 12;11:630. doi: 10.1186/1471-2164-11-630.

22.

Posttranscriptional control of mitochondrial biogenesis: spatio-temporal regulation of the protein import process.

Devaux F, Lelandais G, Garcia M, Goussard S, Jacq C.

FEBS Lett. 2010 Oct 22;584(20):4273-9. doi: 10.1016/j.febslet.2010.09.030. Epub 2010 Sep 26. Review.

23.

Statistical inference of the time-varying structure of gene-regulation networks.

Lèbre S, Becq J, Devaux F, Stumpf MP, Lelandais G.

BMC Syst Biol. 2010 Sep 22;4:130. doi: 10.1186/1752-0509-4-130.

24.

MitoGenesisDB: an expression data mining tool to explore spatio-temporal dynamics of mitochondrial biogenesis.

Gelly JC, Orgeur M, Jacq C, Lelandais G.

Nucleic Acids Res. 2011 Jan;39(Database issue):D1079-84. doi: 10.1093/nar/gkq781. Epub 2010 Sep 9.

25.

Comparative functional genomics of stress responses in yeasts.

Lelandais G, Devaux F.

OMICS. 2010 Oct;14(5):501-15. doi: 10.1089/omi.2010.0029. Epub 2010 Aug 9. Review.

PMID:
20695825
26.

Comparative analysis of missing value imputation methods to improve clustering and interpretation of microarray experiments.

Celton M, Malpertuy A, Lelandais G, de Brevern AG.

BMC Genomics. 2010 Jan 7;11:15. doi: 10.1186/1471-2164-11-15.

27.

Spatio-temporal dynamics of yeast mitochondrial biogenesis: transcriptional and post-transcriptional mRNA oscillatory modules.

Lelandais G, Saint-Georges Y, Geneix C, Al-Shikhley L, Dujardin G, Jacq C.

PLoS Comput Biol. 2009 Jun;5(6):e1000409. doi: 10.1371/journal.pcbi.1000409. Epub 2009 Jun 12.

28.

Genome adaptation to chemical stress: clues from comparative transcriptomics in Saccharomyces cerevisiae and Candida glabrata.

Lelandais G, Tanty V, Geneix C, Etchebest C, Jacq C, Devaux F.

Genome Biol. 2008;9(11):R164. doi: 10.1186/gb-2008-9-11-r164. Epub 2008 Nov 24.

29.

Structure and properties of transcriptional networks driving selenite stress response in yeasts.

Salin H, Fardeau V, Piccini E, Lelandais G, Tanty V, Lemoine S, Jacq C, Devaux F.

BMC Genomics. 2008 Jul 15;9:333. doi: 10.1186/1471-2164-9-333.

30.

Clustering gene expression data using graph separators.

Kaba B, Pinet N, Lelandais G, Sigayret A, Berry A.

In Silico Biol. 2007;7(4-5):433-52.

PMID:
18391236
31.

Responses of pathogenic and nonpathogenic yeast species to steroids reveal the functioning and evolution of multidrug resistance transcriptional networks.

Banerjee D, Lelandais G, Shukla S, Mukhopadhyay G, Jacq C, Devaux F, Prasad R.

Eukaryot Cell. 2008 Jan;7(1):68-77. Epub 2007 Nov 9.

32.

The central role of PDR1 in the foundation of yeast drug resistance.

Fardeau V, Lelandais G, Oldfield A, Salin H, Lemoine S, Garcia M, Tanty V, Le Crom S, Jacq C, Devaux F.

J Biol Chem. 2007 Feb 16;282(7):5063-74. Epub 2006 Dec 11.

33.

Comparing gene expression networks in a multi-dimensional space to extract similarities and differences between organisms.

Lelandais G, Vincens P, Badel-Chagnon A, Vialette S, Jacq C, Hazout S.

Bioinformatics. 2006 Jun 1;22(11):1359-66. Epub 2006 Mar 9.

PMID:
16527831
34.

Early expression of yeast genes affected by chemical stress.

Lucau-Danila A, Lelandais G, Kozovska Z, Tanty V, Delaveau T, Devaux F, Jacq C.

Mol Cell Biol. 2005 Mar;25(5):1860-8.

35.

MiCoViTo: a tool for gene-centric comparison and visualization of yeast transcriptome states.

Lelandais G, Marc P, Vincens P, Jacq C, Vialette S.

BMC Bioinformatics. 2004 Mar 3;5:20.

36.

yMGV: a cross-species expression data mining tool.

Lelandais G, Le Crom S, Devaux F, Vialette S, Church GM, Jacq C, Marc P.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D323-5.

37.

Competitive promoter occupancy by two yeast paralogous transcription factors controlling the multidrug resistance phenomenon.

Lucau-Danila A, Delaveau T, Lelandais G, Devaux F, Jacq C.

J Biol Chem. 2003 Dec 26;278(52):52641-50. Epub 2003 Sep 25.

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