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Items: 10


HiGlass: web-based visual exploration and analysis of genome interaction maps.

Kerpedjiev P, Abdennur N, Lekschas F, McCallum C, Dinkla K, Strobelt H, Luber JM, Ouellette SB, Azhir A, Kumar N, Hwang J, Lee S, Alver BH, Pfister H, Mirny LA, Park PJ, Gehlenborg N.

Genome Biol. 2018 Aug 24;19(1):125. doi: 10.1186/s13059-018-1486-1.


A Standard Nomenclature for Referencing and Authentication of Pluripotent Stem Cells.

Kurtz A, Seltmann S, Bairoch A, Bittner MS, Bruce K, Capes-Davis A, Clarke L, Crook JM, Daheron L, Dewender J, Faulconbridge A, Fujibuchi W, Gutteridge A, Hei DJ, Kim YO, Kim JH, Kokocinski AK, Lekschas F, Lomax GP, Loring JF, Ludwig T, Mah N, Matsui T, Müller R, Parkinson H, Sheldon M, Smith K, Stachelscheid H, Stacey G, Streeter I, Veiga A, Xu RH.

Stem Cell Reports. 2018 Jan 9;10(1):1-6. doi: 10.1016/j.stemcr.2017.12.002. Review.


SATORI: a system for ontology-guided visual exploration of biomedical data repositories.

Lekschas F, Gehlenborg N.

Bioinformatics. 2018 Apr 1;34(7):1200-1207. doi: 10.1093/bioinformatics/btx739.


HiPiler: Visual Exploration of Large Genome Interaction Matrices with Interactive Small Multiples.

Lekschas F, Bach B, Kerpedjiev P, Gehlenborg N, Pfister H.

IEEE Trans Vis Comput Graph. 2018 Jan;24(1):522-531. doi: 10.1109/TVCG.2017.2745978. Epub 2017 Aug 29.


hPSCreg--the human pluripotent stem cell registry.

Seltmann S, Lekschas F, Müller R, Stachelscheid H, Bittner MS, Zhang W, Kidane L, Seriola A, Veiga A, Stacey G, Kurtz A.

Nucleic Acids Res. 2016 Jan 4;44(D1):D757-63. doi: 10.1093/nar/gkv963. Epub 2015 Sep 22.


MGFM: a novel tool for detection of tissue and cell specific marker genes from microarray gene expression data.

El Amrani K, Stachelscheid H, Lekschas F, Kurtz A, Andrade-Navarro MA.

BMC Genomics. 2015 Aug 28;16:645. doi: 10.1186/s12864-015-1785-9.


Semantic Body Browser: graphical exploration of an organism and spatially resolved expression data visualization.

Lekschas F, Stachelscheid H, Seltmann S, Kurtz A.

Bioinformatics. 2015 Mar 1;31(5):794-6. doi: 10.1093/bioinformatics/btu707. Epub 2014 Oct 24.


CellFinder: a cell data repository.

Stachelscheid H, Seltmann S, Lekschas F, Fontaine JF, Mah N, Neves M, Andrade-Navarro MA, Leser U, Kurtz A.

Nucleic Acids Res. 2014 Jan;42(Database issue):D950-8. doi: 10.1093/nar/gkt1264. Epub 2013 Dec 3.


CELDA -- an ontology for the comprehensive representation of cells in complex systems.

Seltmann S, Stachelscheid H, Damaschun A, Jansen L, Lekschas F, Fontaine JF, Nguyen-Dobinsky TN, Leser U, Kurtz A.

BMC Bioinformatics. 2013 Jul 17;14:228. doi: 10.1186/1471-2105-14-228.


Preliminary evaluation of the CellFinder literature curation pipeline for gene expression in kidney cells and anatomical parts.

Neves M, Damaschun A, Mah N, Lekschas F, Seltmann S, Stachelscheid H, Fontaine JF, Kurtz A, Leser U.

Database (Oxford). 2013 Apr 18;2013:bat020. doi: 10.1093/database/bat020. Print 2013.

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