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Items: 1 to 50 of 64

1.

The European Nucleotide Archive in 2018.

Harrison PW, Alako B, Amid C, Cerdeño-Tárraga A, Cleland I, Holt S, Hussein A, Jayathilaka S, Kay S, Keane T, Leinonen R, Liu X, Martínez-Villacorta J, Milano A, Pakseresht N, Rajan J, Reddy K, Richards E, Rosello M, Silvester N, Smirnov D, Toribio AL, Vijayaraja S, Cochrane G.

Nucleic Acids Res. 2019 Jan 8;47(D1):D84-D88. doi: 10.1093/nar/gky1078.

2.

The European Nucleotide Archive in 2017.

Silvester N, Alako B, Amid C, Cerdeño-Tarrága A, Clarke L, Cleland I, Harrison PW, Jayathilaka S, Kay S, Keane T, Leinonen R, Liu X, Martínez-Villacorta J, Menchi M, Reddy K, Pakseresht N, Rajan J, Rossello M, Smirnov D, Toribio AL, Vaughan D, Zalunin V, Cochrane G.

Nucleic Acids Res. 2018 Jan 4;46(D1):D36-D40. doi: 10.1093/nar/gkx1125.

3.

European Nucleotide Archive in 2016.

Toribio AL, Alako B, Amid C, Cerdeño-Tarrága A, Clarke L, Cleland I, Fairley S, Gibson R, Goodgame N, Ten Hoopen P, Jayathilaka S, Kay S, Leinonen R, Liu X, Martínez-Villacorta J, Pakseresht N, Rajan J, Reddy K, Rosello M, Silvester N, Smirnov D, Vaughan D, Zalunin V, Cochrane G.

Nucleic Acids Res. 2017 Jan 4;45(D1):D32-D36. doi: 10.1093/nar/gkw1106. Epub 2016 Nov 29.

4.

Biocuration of functional annotation at the European nucleotide archive.

Gibson R, Alako B, Amid C, Cerdeño-Tárraga A, Cleland I, Goodgame N, Ten Hoopen P, Jayathilaka S, Kay S, Leinonen R, Liu X, Pallreddy S, Pakseresht N, Rajan J, Rosselló M, Silvester N, Smirnov D, Toribio AL, Vaughan D, Zalunin V, Cochrane G.

Nucleic Acids Res. 2016 Jan 4;44(D1):D58-66. doi: 10.1093/nar/gkv1311. Epub 2015 Nov 28.

5.

The European Genome-phenome Archive of human data consented for biomedical research.

Lappalainen I, Almeida-King J, Kumanduri V, Senf A, Spalding JD, Ur-Rehman S, Saunders G, Kandasamy J, Caccamo M, Leinonen R, Vaughan B, Laurent T, Rowland F, Marin-Garcia P, Barker J, Jokinen P, Torres AC, de Argila JR, Llobet OM, Medina I, Puy MS, Alberich M, de la Torre S, Navarro A, Paschall J, Flicek P.

Nat Genet. 2015 Jul;47(7):692-5. doi: 10.1038/ng.3312. No abstract available.

6.

Content discovery and retrieval services at the European Nucleotide Archive.

Silvester N, Alako B, Amid C, Cerdeño-Tárraga A, Cleland I, Gibson R, Goodgame N, Ten Hoopen P, Kay S, Leinonen R, Li W, Liu X, Lopez R, Pakseresht N, Pallreddy S, Plaister S, Radhakrishnan R, Rossello M, Senf A, Smirnov D, Toribio AL, Vaughan D, Zalunin V, Cochrane G.

Nucleic Acids Res. 2015 Jan;43(Database issue):D23-9. doi: 10.1093/nar/gku1129. Epub 2014 Nov 17.

7.

Recurrent thyroid cancers have more peritumoural lymphatic vasculature than nonrecurrent thyroid cancers.

Hakala T, Sand J, Kellokumpu-Lehtinen PL, Huhtala H, Leinonen R, Kholová I.

Eur J Clin Invest. 2014 Sep;44(9):825-32. doi: 10.1111/eci.12301.

PMID:
25047155
8.

Serum hyperglycosylated human chorionic gonadotrophin at 14-17 weeks of gestation does not predict preeclampsia.

Keikkala E, Ranta JK, Vuorela P, Leinonen R, Laivuori H, Väisänen S, Marttala J, Romppanen J, Pulkki K, Stenman UH, Heinonen S.

Prenat Diagn. 2014 Jul;34(7):699-705. doi: 10.1002/pd.4335. Epub 2014 Feb 17.

PMID:
24464955
9.

Assembly information services in the European Nucleotide Archive.

Pakseresht N, Alako B, Amid C, Cerdeño-Tárraga A, Cleland I, Gibson R, Goodgame N, Gur T, Jang M, Kay S, Leinonen R, Li W, Liu X, Lopez R, McWilliam H, Oisel A, Pallreddy S, Plaister S, Radhakrishnan R, Rivière S, Rossello M, Senf A, Silvester N, Smirnov D, Squizzato S, ten Hoopen P, Toribio AL, Vaughan D, Zalunin V, Cochrane G.

Nucleic Acids Res. 2014 Jan;42(Database issue):D38-43. doi: 10.1093/nar/gkt1082. Epub 2013 Nov 8.

10.

EBI metagenomics--a new resource for the analysis and archiving of metagenomic data.

Hunter S, Corbett M, Denise H, Fraser M, Gonzalez-Beltran A, Hunter C, Jones P, Leinonen R, McAnulla C, Maguire E, Maslen J, Mitchell A, Nuka G, Oisel A, Pesseat S, Radhakrishnan R, Rocca-Serra P, Scheremetjew M, Sterk P, Vaughan D, Cochrane G, Field D, Sansone SA.

Nucleic Acids Res. 2014 Jan;42(Database issue):D600-6. doi: 10.1093/nar/gkt961. Epub 2013 Oct 27.

11.

Is climate warming more consequential towards poles? The phenology of Lepidoptera in Finland.

Valtonen A, Leinonen R, Pöyry J, Roininen H, Tuomela J, Ayres MP.

Glob Chang Biol. 2014 Jan;20(1):16-27. doi: 10.1111/gcb.12372. Epub 2013 Sep 24.

PMID:
24115266
12.

Genetic susceptibility to non-necrotizing erysipelas/cellulitis.

Hannula-Jouppi K, Massinen S, Siljander T, Mäkelä S, Kivinen K, Leinonen R, Jiao H, Aitos P, Karppelin M, Vuopio J, Syrjänen J, Kere J.

PLoS One. 2013;8(2):e56225. doi: 10.1371/journal.pone.0056225. Epub 2013 Feb 20.

13.

Facing growth in the European Nucleotide Archive.

Cochrane G, Alako B, Amid C, Bower L, Cerdeño-Tárraga A, Cleland I, Gibson R, Goodgame N, Jang M, Kay S, Leinonen R, Lin X, Lopez R, McWilliam H, Oisel A, Pakseresht N, Pallreddy S, Park Y, Plaister S, Radhakrishnan R, Rivière S, Rossello M, Senf A, Silvester N, Smirnov D, Ten Hoopen P, Toribio A, Vaughan D, Zalunin V.

Nucleic Acids Res. 2013 Jan;41(Database issue):D30-5. doi: 10.1093/nar/gks1175. Epub 2012 Nov 29.

14.

OS009. Second trimester serum hyperglycosylated human chorionic gonadotrophin and preeclampsia.

Keikkala E, Vuorela P, Leinonen R, Laivuori H, Romppanen J, Heinonen S, Stenman UH.

Pregnancy Hypertens. 2012 Jul;2(3):179. doi: 10.1016/j.preghy.2012.04.010. Epub 2012 Jun 13.

PMID:
26105223
15.

The 1000 Genomes Project: data management and community access.

Clarke L, Zheng-Bradley X, Smith R, Kulesha E, Xiao C, Toneva I, Vaughan B, Preuss D, Leinonen R, Shumway M, Sherry S, Flicek P; 1000 Genomes Project Consortium.

Nat Methods. 2012 Apr 27;9(5):459-62. doi: 10.1038/nmeth.1974.

16.

Perceived barriers in the outdoor environment and development of walking difficulties in older people.

Rantakokko M, Iwarsson S, Mänty M, Leinonen R, Rantanen T.

Age Ageing. 2012 Jan;41(1):118-21. doi: 10.1093/ageing/afr136. Epub 2011 Nov 14. No abstract available.

PMID:
22086965
17.

Major submissions tool developments at the European Nucleotide Archive.

Amid C, Birney E, Bower L, Cerdeño-Tárraga A, Cheng Y, Cleland I, Faruque N, Gibson R, Goodgame N, Hunter C, Jang M, Leinonen R, Liu X, Oisel A, Pakseresht N, Plaister S, Radhakrishnan R, Reddy K, Rivière S, Rossello M, Senf A, Smirnov D, Ten Hoopen P, Vaughan D, Vaughan R, Zalunin V, Cochrane G.

Nucleic Acids Res. 2012 Jan;40(Database issue):D43-7. doi: 10.1093/nar/gkr946. Epub 2011 Nov 12.

18.

A supportive home visit program for older adults implemented by non-professionals: feasibility and effects on physical performance and quality of life at one year--a pilot study.

Niemelä K, Leinonen R, Laukkanen P.

Arch Gerontol Geriatr. 2012 May-Jun;54(3):e376-82. doi: 10.1016/j.archger.2011.10.006. Epub 2011 Nov 4.

PMID:
22055966
19.

The Sequence Read Archive: explosive growth of sequencing data.

Kodama Y, Shumway M, Leinonen R; International Nucleotide Sequence Database Collaboration.

Nucleic Acids Res. 2012 Jan;40(Database issue):D54-6. doi: 10.1093/nar/gkr854. Epub 2011 Oct 18.

20.

Effect of physical activity counseling on physical activity of older people in Finland (ISRCTN 07330512).

Rasinaho M, Hirvensalo M, Törmäkangas T, Leinonen R, Lintunen T, Rantanen T.

Health Promot Int. 2012 Dec;27(4):463-74. doi: 10.1093/heapro/dar057. Epub 2011 Sep 11.

PMID:
21911336
21.

Efficient storage of high throughput DNA sequencing data using reference-based compression.

Hsi-Yang Fritz M, Leinonen R, Cochrane G, Birney E.

Genome Res. 2011 May;21(5):734-40. doi: 10.1101/gr.114819.110. Epub 2011 Jan 18.

22.

The sequence read archive.

Leinonen R, Sugawara H, Shumway M; International Nucleotide Sequence Database Collaboration.

Nucleic Acids Res. 2011 Jan;39(Database issue):D19-21. doi: 10.1093/nar/gkq1019. Epub 2010 Nov 9.

23.

Quality of life and barriers in the urban outdoor environment in old age.

Rantakokko M, Iwarsson S, Kauppinen M, Leinonen R, Heikkinen E, Rantanen T.

J Am Geriatr Soc. 2010 Nov;58(11):2154-9. doi: 10.1111/j.1532-5415.2010.03143.x.

PMID:
21054297
24.

The European Nucleotide Archive.

Leinonen R, Akhtar R, Birney E, Bower L, Cerdeno-Tárraga A, Cheng Y, Cleland I, Faruque N, Goodgame N, Gibson R, Hoad G, Jang M, Pakseresht N, Plaister S, Radhakrishnan R, Reddy K, Sobhany S, Ten Hoopen P, Vaughan R, Zalunin V, Cochrane G.

Nucleic Acids Res. 2011 Jan;39(Database issue):D28-31. doi: 10.1093/nar/gkq967. Epub 2010 Oct 23.

25.

The effect of geriatric rehabilitation on physical performance and pain in men and women.

Niemelä K, Leinonen R, Laukkanen P.

Arch Gerontol Geriatr. 2011 May-Jun;52(3):e129-33. doi: 10.1016/j.archger.2010.09.006. Epub 2010 Oct 12.

PMID:
20943278
26.

Environmental controls on the phenology of moths: predicting plasticity and constraint under climate change.

Valtonen A, Ayres MP, Roininen H, Pöyry J, Leinonen R.

Oecologia. 2011 Jan;165(1):237-48. doi: 10.1007/s00442-010-1789-8. Epub 2010 Sep 30.

PMID:
20882390
27.

Factors associated with maximal walking speed among older community-living adults.

Sallinen J, Mänty M, Leinonen R, Kallinen M, Törmäkangas T, Heikkinen E, Rantanen T.

Aging Clin Exp Res. 2011 Aug;23(4):273-8. doi: 10.3275/7270. Epub 2010 Sep 28.

PMID:
20881453
28.

Benefits of home-based rocking-chair exercise for physical performance in community-dwelling elderly women: a randomized controlled trial.

Niemelä K, Väänänen I, Leinonen R, Laukkanen P.

Aging Clin Exp Res. 2011 Aug;23(4):279-87. doi: 10.3275/7230. Epub 2010 Aug 27.

PMID:
20802258
29.

Unmet physical activity need in old age.

Rantakokko M, Iwarsson S, Hirvensalo M, Leinonen R, Heikkinen E, Rantanen T.

J Am Geriatr Soc. 2010 Apr;58(4):707-12. doi: 10.1111/j.1532-5415.2010.02792.x.

PMID:
20398151
30.

Cohort differences in health, functioning and physical activity in the young-old Finnish population.

Heikkinen E, Kauppinen M, Rantanen T, Leinonen R, Lyyra TM, Suutama T, Heikkinen RL.

Aging Clin Exp Res. 2011 Apr;23(2):126-34. doi: 10.3275/6932. Epub 2010 Mar 18.

PMID:
20308805
31.

Improvements to services at the European Nucleotide Archive.

Leinonen R, Akhtar R, Birney E, Bonfield J, Bower L, Corbett M, Cheng Y, Demiralp F, Faruque N, Goodgame N, Gibson R, Hoad G, Hunter C, Jang M, Leonard S, Lin Q, Lopez R, Maguire M, McWilliam H, Plaister S, Radhakrishnan R, Sobhany S, Slater G, Ten Hoopen P, Valentin F, Vaughan R, Zalunin V, Zerbino D, Cochrane G.

Nucleic Acids Res. 2010 Jan;38(Database issue):D39-45. doi: 10.1093/nar/gkp998. Epub 2009 Nov 11.

32.

Perceived constraints on physical exercise among obese and non-obese older people.

Sallinen J, Leinonen R, Hirvensalo M, Lyyra TM, Heikkinen E, Rantanen T.

Prev Med. 2009 Dec;49(6):506-10. doi: 10.1016/j.ypmed.2009.10.001. Epub 2009 Oct 13.

PMID:
19833148
33.

[Home rehabilitation assistant improves the quality of life of the elderly].

Leinonen R, Niemelä K, Jokinen S, Kangas I, Laukkanen P.

Duodecim. 2009;125(14):1557-65. Finnish.

PMID:
19711578
34.

Fear of moving outdoors and development of outdoor walking difficulty in older people.

Rantakokko M, Mänty M, Iwarsson S, Törmäkangas T, Leinonen R, Heikkinen E, Rantanen T.

J Am Geriatr Soc. 2009 Apr;57(4):634-40. doi: 10.1111/j.1532-5415.2009.02180.x.

PMID:
19392955
35.

Physical activity history and end-of-life hospital and long-term care.

von Bonsdorff MB, Rantanen T, Leinonen R, Kujala UM, Törmäkangas T, Mänty M, Heikkinen E.

J Gerontol A Biol Sci Med Sci. 2009 Jul;64(7):778-84. doi: 10.1093/gerona/glp029. Epub 2009 Apr 6.

PMID:
19349592
36.

Effect of physical activity counseling on home care use in older people.

von Bonsdorff MB, Leinonen R, Kujala UM, Heikkinen E, Törmäkangas T, Hirvensalo M, Rasinaho M, Karhula S, Mänty M, Rantanen T.

J Am Geriatr Soc. 2009 Mar;57(3):571-3. doi: 10.1111/j.1532-5415.2009.02163.x. No abstract available.

PMID:
19278409
37.

Long-term effect of physical activity counseling on mobility limitation among older people: a randomized controlled study.

Mänty M, Heinonen A, Leinonen R, Törmäkangas T, Hirvensalo M, Kallinen M, Sakari R, von Bonsdorff MB, Heikkinen E, Rantanen T.

J Gerontol A Biol Sci Med Sci. 2009 Jan;64(1):83-9. doi: 10.1093/gerona/gln029. Epub 2009 Jan 20.

38.

Effect of physical activity counseling on disability in older people: a 2-year randomized controlled trial.

von Bonsdorff MB, Leinonen R, Kujala UM, Heikkinen E, Törmäkangas T, Hirvensalo M, Rasinaho M, Karhula S, Mänty M, Rantanen T.

J Am Geriatr Soc. 2008 Dec;56(12):2188-94. doi: 10.1111/j.1532-5415.2008.02000.x.

PMID:
19093917
39.

Petabyte-scale innovations at the European Nucleotide Archive.

Cochrane G, Akhtar R, Bonfield J, Bower L, Demiralp F, Faruque N, Gibson R, Hoad G, Hubbard T, Hunter C, Jang M, Juhos S, Leinonen R, Leonard S, Lin Q, Lopez R, Lorenc D, McWilliam H, Mukherjee G, Plaister S, Radhakrishnan R, Robinson S, Sobhany S, Hoopen PT, Vaughan R, Zalunin V, Birney E.

Nucleic Acids Res. 2009 Jan;37(Database issue):D19-25. doi: 10.1093/nar/gkn765. Epub 2008 Oct 31.

40.

Factors affecting the increased risk of physical inactivity among older people with depressive symptoms.

Rosqvist E, Heikkinen E, Lyyra TM, Hirvensalo M, Kallinen M, Leinonen R, Rasinaho M, Pakkala I, Rantanen T.

Scand J Med Sci Sports. 2009 Jun;19(3):398-405. doi: 10.1111/j.1600-0838.2008.00798.x. Epub 2009 May 22.

PMID:
18503493
41.

The effects of physical activity counseling on mood among 75- to 81-year-old people: a randomized controlled trial.

Pakkala I, Read S, Leinonen R, Hirvensalo M, Lintunen T, Rantanen T.

Prev Med. 2008 May;46(5):412-8. Epub 2007 Nov 17.

PMID:
18078985
42.

Priorities for nucleotide trace, sequence and annotation data capture at the Ensembl Trace Archive and the EMBL Nucleotide Sequence Database.

Cochrane G, Akhtar R, Aldebert P, Althorpe N, Baldwin A, Bates K, Bhattacharyya S, Bonfield J, Bower L, Browne P, Castro M, Cox T, Demiralp F, Eberhardt R, Faruque N, Hoad G, Jang M, Kulikova T, Labarga A, Leinonen R, Leonard S, Lin Q, Lopez R, Lorenc D, McWilliam H, Mukherjee G, Nardone F, Plaister S, Robinson S, Sobhany S, Vaughan R, Wu D, Zhu W, Apweiler R, Hubbard T, Birney E.

Nucleic Acids Res. 2008 Jan;36(Database issue):D5-12. Epub 2007 Nov 26.

43.

The Protein Identifier Cross-Referencing (PICR) service: reconciling protein identifiers across multiple source databases.

Côté RG, Jones P, Martens L, Kerrien S, Reisinger F, Lin Q, Leinonen R, Apweiler R, Hermjakob H.

BMC Bioinformatics. 2007 Oct 18;8:401.

44.

Construct and predictive validity of a self-reported measure of preclinical mobility limitation.

Mänty M, Heinonen A, Leinonen R, Törmäkangas T, Sakari-Rantala R, Hirvensalo M, von Bonsdorff MB, Rantanen T.

Arch Phys Med Rehabil. 2007 Sep;88(9):1108-13.

PMID:
17826454
45.

Customer-oriented counseling for physical activity in older people: study protocol and selected baseline results of a randomized-controlled trial (ISRCTN 07330512).

Leinonen R, Heikkinen E, Hirvensalo M, Lintunen T, Rasinaho M, Sakari-Rantala R, Kallinen M, Koski J, Möttönen S, Kannas S, Huovinen P, Rantanen T.

Scand J Med Sci Sports. 2007 Apr;17(2):156-64.

PMID:
17394477
46.

Motives for and barriers to physical activity among older adults with mobility limitations.

Rasinaho M, Hirvensalo M, Leinonen R, Lintunen T, Rantanen T.

J Aging Phys Act. 2007 Jan;15(1):90-102.

PMID:
17387231
47.

Underlying factors in the association between depressed mood and mobility limitation in older people.

Hirvensalo M, Sakari-Rantala R, Kallinen M, Leinonen R, Lintunen T, Rantanen T.

Gerontology. 2007;53(3):173-8. Epub 2007 Jan 5.

PMID:
17202820
48.

EMBL Nucleotide Sequence Database in 2006.

Kulikova T, Akhtar R, Aldebert P, Althorpe N, Andersson M, Baldwin A, Bates K, Bhattacharyya S, Bower L, Browne P, Castro M, Cochrane G, Duggan K, Eberhardt R, Faruque N, Hoad G, Kanz C, Lee C, Leinonen R, Lin Q, Lombard V, Lopez R, Lorenc D, McWilliam H, Mukherjee G, Nardone F, Pastor MP, Plaister S, Sobhany S, Stoehr P, Vaughan R, Wu D, Zhu W, Apweiler R.

Nucleic Acids Res. 2007 Jan;35(Database issue):D16-20. Epub 2006 Dec 5.

49.

UniSave: the UniProtKB sequence/annotation version database.

Leinonen R, Nardone F, Zhu W, Apweiler R.

Bioinformatics. 2006 May 15;22(10):1284-5. Epub 2006 Mar 21.

PMID:
16551660
50.

EMBL Nucleotide Sequence Database: developments in 2005.

Cochrane G, Aldebert P, Althorpe N, Andersson M, Baker W, Baldwin A, Bates K, Bhattacharyya S, Browne P, van den Broek A, Castro M, Duggan K, Eberhardt R, Faruque N, Gamble J, Kanz C, Kulikova T, Lee C, Leinonen R, Lin Q, Lombard V, Lopez R, McHale M, McWilliam H, Mukherjee G, Nardone F, Pastor MP, Sobhany S, Stoehr P, Tzouvara K, Vaughan R, Wu D, Zhu W, Apweiler R.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D10-5.

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