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Items: 8

1.

Monte Carlo Strategies for Selecting Parameter Values in Simulation Experiments.

Leigh JW, Bryant D.

Syst Biol. 2015 Sep;64(5):741-51. doi: 10.1093/sysbio/syv030. Epub 2015 May 25.

PMID:
26012871
2.

Evaluating phylogenetic congruence in the post-genomic era.

Leigh JW, Lapointe FJ, Lopez P, Bapteste E.

Genome Biol Evol. 2011;3:571-87. doi: 10.1093/gbe/evr050. Epub 2011 Jun 28. Review.

3.

Let them fall where they may: congruence analysis in massive phylogenetically messy data sets.

Leigh JW, Schliep K, Lopez P, Bapteste E.

Mol Biol Evol. 2011 Oct;28(10):2773-85. doi: 10.1093/molbev/msr110. Epub 2011 Apr 27.

PMID:
21527387
4.

A multi-locus time-calibrated phylogeny of the brown algae (Heterokonta, Ochrophyta, Phaeophyceae): Investigating the evolutionary nature of the "brown algal crown radiation".

Silberfeld T, Leigh JW, Verbruggen H, Cruaud C, de Reviers B, Rousseau F.

Mol Phylogenet Evol. 2010 Aug;56(2):659-74. doi: 10.1016/j.ympev.2010.04.020. Epub 2010 Apr 19.

PMID:
20412862
5.

Network analyses structure genetic diversity in independent genetic worlds.

Halary S, Leigh JW, Cheaib B, Lopez P, Bapteste E.

Proc Natl Acad Sci U S A. 2010 Jan 5;107(1):127-32. doi: 10.1073/pnas.0908978107. Epub 2009 Dec 10.

6.

Phylogenomic analyses support the monophyly of Excavata and resolve relationships among eukaryotic "supergroups".

Hampl V, Hug L, Leigh JW, Dacks JB, Lang BF, Simpson AG, Roger AJ.

Proc Natl Acad Sci U S A. 2009 Mar 10;106(10):3859-64. doi: 10.1073/pnas.0807880106. Epub 2009 Feb 23.

7.

Phylogenomic analyses support the monophyly of Taphrinomycotina, including Schizosaccharomyces fission yeasts.

Liu Y, Leigh JW, Brinkmann H, Cushion MT, Rodriguez-Ezpeleta N, Philippe H, Lang BF.

Mol Biol Evol. 2009 Jan;26(1):27-34. doi: 10.1093/molbev/msn221. Epub 2008 Oct 14.

PMID:
18922765
8.

Testing congruence in phylogenomic analysis.

Leigh JW, Susko E, Baumgartner M, Roger AJ.

Syst Biol. 2008 Feb;57(1):104-15. doi: 10.1080/10635150801910436.

PMID:
18288620

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