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RiboVIEW: a computational framework for visualization, quality control and statistical analysis of ribosome profiling data.

Legrand C, Tuorto F.

Nucleic Acids Res. 2019 Nov 28. pii: gkz1074. doi: 10.1093/nar/gkz1074. [Epub ahead of print]


Evaluating case management as a complex intervention: Lessons for the future.

Lambert AS, Legrand C, Cès S, Van Durme T, Macq J.

PLoS One. 2019 Oct 31;14(10):e0224286. doi: 10.1371/journal.pone.0224286. eCollection 2019.


Physical activity is associated with improved bone health in children with inflammatory bowel disease.

Vanhelst J, Vidal F, Turck D, Drumez E, Djeddi D, Devouge E, Spyckerelle C, Zandzou SG, Legrand C, Michaud L, Béghin L, Gottrand F, Coopman S, Ley D.

Clin Nutr. 2019 Jul 26. pii: S0261-5614(19)30300-0. doi: 10.1016/j.clnu.2019.07.018. [Epub ahead of print]


Molecular p-doping in organic liquid crystalline semiconductors: influence of the charge transfer complex on the properties of mesophase and bulk charge transport.

Kondratenko K, Boussoualem Y, Singh DP, Visvanathan R, Duncan AE, Clark NA, Legrand C, Daoudi A.

Phys Chem Chem Phys. 2019 Aug 28;21(34):18686-18698. doi: 10.1039/c9cp03076j.


Joint longitudinal and time-to-event cure models for the assessment of being cured.

Barbieri A, Legrand C.

Stat Methods Med Res. 2019 Jun 19:962280219853599. doi: 10.1177/0962280219853599. [Epub ahead of print]


A time-resolved live cell imaging assay to identify small molecule inhibitors of FGF2 signaling.

Ahmed M, Legrand C, Yagüe Relimpio A, Beretta CA, Muschko A, Wegehingel S, Müller HM, Sehr P, Will DW, Lewis JD, Nickel W.

FEBS Lett. 2019 Aug;593(16):2162-2176. doi: 10.1002/1873-3468.13462. Epub 2019 Jun 7.


Intensive upper limb therapy including a robotic device after surgically repaired brachial plexus injury: a case study.

Duret C, Goubier JN, Renaudin A, Legrand C, Drouard P, Grosmaire AG, Koeppel T.

Eur J Phys Rehabil Med. 2019 Aug;55(4):534-536. doi: 10.23736/S1973-9087.19.05415-7. Epub 2019 May 15. No abstract available.


DNA alteration-based classification of uveal melanoma gives better prognostic stratification than immune infiltration, which has a neutral effect in high-risk group.

Narasimhaiah D, Legrand C, Damotte D, Remark R, Munda M, De Potter P, Coulie PG, Vikkula M, Godfraind C.

Cancer Med. 2019 Jun;8(6):3036-3046. doi: 10.1002/cam4.2122. Epub 2019 Apr 25.


Incidence and risk factors for adverse events during monitored anaesthesia care for gastrointestinal endoscopy in children: A prospective observational study.

Najafi N, Veyckemans F, Vanhonacker D, Legrand C, Van de Velde A, Vandenplas Y, Poelaert J.

Eur J Anaesthesiol. 2019 Jun;36(6):390-399. doi: 10.1097/EJA.0000000000000995.


Inflammatory parameters associated with systemic reactogenicity following vaccination with adjuvanted hepatitis B vaccines in humans.

Burny W, Marchant A, Hervé C, Callegaro A, Caubet M, Fissette L, Gheyle L, Legrand C, Ndour C, Tavares Da Silva F, van der Most R, Willems F, Didierlaurent AM, Yarzabal J; ECR-008 study group.

Vaccine. 2019 Mar 28;37(14):2004-2015. doi: 10.1016/j.vaccine.2019.02.015. Epub 2019 Mar 5.


Discontinuation of antimicrobial therapy in adult neutropenic haematology patients: A prospective cohort.

Van de Wyngaert Z, Berthon C, Debarri H, Bories C, Bonnet S, Nudel M, Carpentier B, Legrand C, Barbieux S, Chauvet P, Simonnet A, Willaume A, Bossard JB, Renaud L, Wattebled KJ, Escure G, Branche N, Arib I, Titecat M, Quesnel B, Alfandari S.

Int J Antimicrob Agents. 2019 Jun;53(6):781-788. doi: 10.1016/j.ijantimicag.2019.02.020. Epub 2019 Mar 2.


Queuine links translational control in eukaryotes to a micronutrient from bacteria.

Müller M, Legrand C, Tuorto F, Kelly VP, Atlasi Y, Lyko F, Ehrenhofer-Murray AE.

Nucleic Acids Res. 2019 Apr 23;47(7):3711-3727. doi: 10.1093/nar/gkz063.


High Frequency Multi-Year Variability in Baltic Sea Microbial Plankton Stocks and Activities.

Bunse C, Israelsson S, Baltar F, Bertos-Fortis M, Fridolfsson E, Legrand C, Lindehoff E, Lindh MV, Martínez-García S, Pinhassi J.

Front Microbiol. 2019 Jan 17;9:3296. doi: 10.3389/fmicb.2018.03296. eCollection 2018.


Consistency in microbiomes in cultures of Alexandrium species isolated from brackish and marine waters.

Sörenson E, Bertos-Fortis M, Farnelid H, Kremp A, Krüger K, Lindehoff E, Legrand C.

Environ Microbiol Rep. 2019 Jun;11(3):425-433. doi: 10.1111/1758-2229.12736. Epub 2019 Mar 7.


Division of labour: tRNA methylation by the NSun2 tRNA methyltransferases Trm4a and Trm4b in fission yeast.

Müller M, Samel-Pommerencke A, Legrand C, Tuorto F, Lyko F, Ehrenhofer-Murray AE.

RNA Biol. 2019 Mar;16(3):249-256. doi: 10.1080/15476286.2019.1568819. Epub 2019 Feb 1.


The single-index/Cox mixture cure model.

Amico M, Van Keilegom I, Legrand C.

Biometrics. 2019 Jun;75(2):452-462. doi: 10.1111/biom.12999. Epub 2019 Mar 29.


A note on tests for relevant differences with extremely large sample sizes.

Callegaro A, Ndour C, Aris E, Legrand C.

Biom J. 2019 Jan;61(1):162-165. doi: 10.1002/bimj.201800195. Epub 2018 Nov 11.


BisAMP: A web-based pipeline for targeted RNA cytosine-5 methylation analysis.

Bormann F, Tuorto F, Cirzi C, Lyko F, Legrand C.

Methods. 2019 Mar 1;156:121-127. doi: 10.1016/j.ymeth.2018.10.013. Epub 2018 Oct 24.


Queuosine-modified tRNAs confer nutritional control of protein translation.

Tuorto F, Legrand C, Cirzi C, Federico G, Liebers R, Müller M, Ehrenhofer-Murray AE, Dittmar G, Gröne HJ, Lyko F.

EMBO J. 2018 Sep 14;37(18). pii: e99777. doi: 10.15252/embj.201899777. Epub 2018 Aug 9.


Response of Microbial Communities to Changing Climate Conditions During Summer Cyanobacterial Blooms in the Baltic Sea.

Berner C, Bertos-Fortis M, Pinhassi J, Legrand C.

Front Microbiol. 2018 Jul 25;9:1562. doi: 10.3389/fmicb.2018.01562. eCollection 2018.


Flexible parametric approach to classical measurement error variance estimation without auxiliary data.

Bertrand A, Van Keilegom I, Legrand C.

Biometrics. 2019 Mar;75(1):297-307. doi: 10.1111/biom.12960. Epub 2018 Sep 11.


Spring and Late Summer Phytoplankton Biomass Impact on the Coastal Sediment Microbial Community Structure.

Broman E, Li L, Fridlund J, Svensson F, Legrand C, Dopson M.

Microb Ecol. 2019 Feb;77(2):288-303. doi: 10.1007/s00248-018-1229-6. Epub 2018 Jul 17.


Motivational interviewing training for medical students: A pilot pre-post feasibility study.

Chéret A, Durier C, Noël N, Bourdic K, Legrand C, D'Andréa C, Hem E, Goujard C, Berthiaume P, Consoli SM.

Patient Educ Couns. 2018 Nov;101(11):1934-1941. doi: 10.1016/j.pec.2018.06.011. Epub 2018 Jun 21.


Glycation marker glucosepane increases with the progression of osteoarthritis and correlates with morphological and functional changes of cartilage in vivo.

Legrand C, Ahmed U, Anwar A, Rajpoot K, Pasha S, Lambert C, Davidson RK, Clark IM, Thornalley PJ, Henrotin Y, Rabbani N.

Arthritis Res Ther. 2018 Jun 22;20(1):131. doi: 10.1186/s13075-018-1636-6.


The interstitial macrophage: A long-neglected piece in the puzzle of lung immunity.

Liegeois M, Legrand C, Desmet CJ, Marichal T, Bureau F.

Cell Immunol. 2018 Aug;330:91-96. doi: 10.1016/j.cellimm.2018.02.001. Epub 2018 Feb 8. Review.


Mutations in Cytosine-5 tRNA Methyltransferases Impact Mobile Element Expression and Genome Stability at Specific DNA Repeats.

Genenncher B, Durdevic Z, Hanna K, Zinkl D, Mobin MB, Senturk N, Da Silva B, Legrand C, Carré C, Lyko F, Schaefer M.

Cell Rep. 2018 Feb 13;22(7):1861-1874. doi: 10.1016/j.celrep.2018.01.061.


Vertical modeling: analysis of competing risks data with a cure fraction.

Nicolaie MA, Taylor JMG, Legrand C.

Lifetime Data Anal. 2019 Jan;25(1):1-25. doi: 10.1007/s10985-018-9417-8. Epub 2018 Jan 31.


Inference in a survival cure model with mismeasured covariates using a simulation-extrapolation approach.

Bertrand A, Legrand C, Carroll RJ, De Meester C, Van Keilegom I.

Polit Anal. 2017 Mar 1;104(1):31-50. doi: 10.1093/biomet/asw054. Epub 2017 Jan 3.


Biogenesis of the bacterial cbb3 cytochrome c oxidase: Active subcomplexes support a sequential assembly model.

Durand A, Bourbon ML, Steunou AS, Khalfaoui-Hassani B, Legrand C, Guitton A, Astier C, Ouchane S.

J Biol Chem. 2018 Jan 19;293(3):808-818. doi: 10.1074/jbc.M117.805184. Epub 2017 Nov 17.


Dramatic Increase in Incidence of Ulcerative Colitis and Crohn's Disease (1988-2011): A Population-Based Study of French Adolescents.

Ghione S, Sarter H, Fumery M, Armengol-Debeir L, Savoye G, Ley D, Spyckerelle C, Pariente B, Peyrin-Biroulet L, Turck D, Gower-Rousseau C, Andre JM, Antonietti M, Aouakli A, Armand A, Aroichane I, Assi F, Aubet JP, Auxenfants E, Ayafi-Ramelot F, Bankovski D, Barbry B, Bardoux N, Baron P, Baudet A, Bazin B, Bebahani A, Becqwort JP, Benet V, Benali H, Benguigui C, Soussan BE, Bental A, Berkelmans I, Bernet J, Bernou K, Bernou-Dron C, Bertot P, Bertiaux-Vandaële N, Bertrand V, Billoud E, Biron N, Bismuth B, Bleuet M, Blondel F, Blondin V, Bohon P, Boniface E, Bonnière P, Bonvarlet E, Bonvarlet P, Boruchowicz A, Bostvironnois R, Boualit M, Bouche B, Boudaillez C, Bourgeaux C, Bourgeois M, Bourguet A, Bourienne A, Branche J, Bray G, Brazier F, Breban P, Brihier H, Brung-Lefebvre V, Bulois P, Burgiere P, Butel J, Canva JY, Canva-Delcambre V, Capron JP, Cardot F, Carpentier P, Cartier E, Cassar JF, Cassagnou M, Castex JF, Catala P, Cattan S, Catteau S, Caujolle B, Cayron G, Chandelier C, Chantre M, Charles J, Charneau T, Chavance-Thelu M, Chirita D, Choteau A, Claerbout JF, Clergue PY, Coevoet H, Cohen G, Collet R, Colombel JF, Coopman S, Corvisart J, Cortot A, Couttenier F, Crinquette JF, Crombe V, Dadamessi I, Dapvril V, Davion T, Dautreme S, Debas J, Degrave N, Dehont F, Delatre C, Delcenserie R, Delette O, Delgrange T, Delhoustal L, Delmotte JS, Demmane S, Deregnaucourt G, Descombes P, Desechalliers JP, Desmet P, Desreumaux P, Desseaux G, Desurmont P, Devienne A, Devouge E, Devred M, Devroux A, Dewailly A, Dharancy S, Di Fiore A, Djeddi D, Djedir R, Dreher-Duwat ML, Dubois R, Dubuque C, Ducatillon P, Duclay J, Ducrocq B, Ducrot F, Ducrotte P, Dufilho A, Duhamel C, Dujardin D, Dumant-Forest C, Dupas JL, Dupont F, Duranton Y, Duriez A, El Achkar K, El Farisi M, Elie C, Elie-Legrand MC, Elkhaki A, Eoche M, Evrard D, Evrard JP, Fatome A, Filoche B, Finet L, Flahaut M, Flamme C, Foissey D, Fournier P, Foutrein-Comes MC, Foutrein P, Fremond D, Frere T, Fumery M, Gallet P, Gamblin C, Ganga-Zandzou PS, Gérard R, Geslin G, Gheyssens Y, Ghossini N, Ghrib S, Gilbert T, Gillet B, Godard D, Godard P, Godchaux JM, Godchaux R, Goegebeur G, Goria O, Gottrand F, Gower P, Grandmaison B, Groux M, Guedon C, Guillard JF, Guillem L, Guillemot F, Guimber D, Haddouche B, Hakim S, Hanon D, Hautefeuille V, Heckestweiller P, Hecquet G, Hedde JP, Hellal H, Henneresse PE, Heyman B, Heraud M, Herve S, Hochain P, Houssin-Bailly L, Houcke P, Huguenin B, Iobagiu S, Ivanovic A, Iwanicki-Caron I, Janicki E, Jarry M, Jeu J, Joly JP, Jonas C, Katherin F, Kerleveo A, Khachfe A, Kiriakos A, Kiriakos J, Klein O, Kohut M, Kornhauser R, Koutsomanis D, Laberenne JE, Laffineur G, Lagarde M, Lannoy P, Lapchin J, Lapprand M, Laude D, Leblanc R, Lecieux P, Leclerc N, Le Couteulx C, Ledent J, Lefebvre J, Lefiliatre P, Legrand C, Le Grix A, Lelong P, Leluyer B, Lenaerts C, Lepileur L, Leplat A, Lepoutre-Dujardin E, Leroi H, Leroy MY, Lesage JP, Lesage X, Lesage J, Lescanne-Darchis I, Lescut J, Lescut D, Leurent B, Levy P, Lhermie M, Lion A, Lisambert B, Loire F, Louf S, Louvet A, Luciani M, Lucidarme D, Lugand J, Macaigne O, Maetz D, Maillard D, Mancheron H, Manolache O, Marks-Brunel AB, Marti R, Martin F, Martin G, Marzloff E, Mathurin P, Mauillon J, Maunoury V, Maupas JL, Mesnard B, Metayer P, Methari L, Meurisse B, Meurisse F, Michaud L, Mirmaran X, Modaine P, Monthe A, Morel L, Mortier PE, Moulin E, Mouterde O, Mudry J, Nachury M, Khac NE, Notteghem B, Ollevier V, Ostyn A, Ouraghi A, Ouvry D, Paillot B, Panien-Claudot N, Paoletti C, Papazian A, Parent B, Pariente B, Paris JC, Patrier P, Paupart L, Pauwels B, Pauwels M, Petit R, Piat M, Piotte S, Plane C, Plouvier B, Pollet E, Pommelet P, Pop D, Pordes C, Pouchain G, Prades P, Prevost A, Prevost JC, Quesnel B, Queuniet AM, Quinton JF, Rabache A, Rabelle P, Raclot G, Ratajczyk S, Rault D, Razemon V, Reix N, Revillon M, Richez C, Robinson P, Rodriguez J, Roger J, Roux JM, Rudelli A, Saber A, Savoye G, Schlosseberg P, Segrestin M, Seguy D, Serin M, Seryer A, Sevenet F, Shekh N, Silvie J, Simon V, Spyckerelle C, Talbodec N, Techy A, Thelu JL, Thevenin A, Thiebault H, Thomas J, Thorel JM, Tielman G, Tode M, Toisin J, Tonnel J, Touchais JY, Touze Y, Tranvouez JL, Triplet C, Turck D, Uhlen S, Vaillant E, Valmage C, Vanco D, Vandamme H, Vanderbecq E, Eecken VE, Vandermolen P, Vandevenne P, Vandeville L, Vandewalle A, Vandewalle C, Vaneslander P, Vanhoove JP, Vanrenterghem A, Varlet P, Vasies I, Verbiese G, Vernier-Massouille G, Vermelle P, Verne C, Vezilier-Cocq P, Vigneron B, Vincendet M, Viot J, Voiment YM, Wacrenier A, Waeghemaecker L, Wallez JY, Wantiez M, Wartel F, Weber J, Willocquet JL, Wizla N, Wolschies E, Zalar A, Zaouri B, Zellweger A, Ziade C; Epimad Group.

Am J Gastroenterol. 2018 Feb;113(2):265-272. doi: 10.1038/ajg.2017.228. Epub 2017 Aug 15.


Statistically robust methylation calling for whole-transcriptome bisulfite sequencing reveals distinct methylation patterns for mouse RNAs.

Legrand C, Tuorto F, Hartmann M, Liebers R, Jacob D, Helm M, Lyko F.

Genome Res. 2017 Sep;27(9):1589-1596. doi: 10.1101/gr.210666.116. Epub 2017 Jul 6.


Corrigendum to "Cost-effectiveness analysis in melanoma detection: A transition model applied to dermoscopy" [Eur J Cancer 67 (2016) 38-45].

Tromme I, Legrand C, Devleesschauwer B, Leiter U, Suciu S, Eggermont A, Sacré L, Baurain JF, Thomas L, Beutels P, Speybroeck N.

Eur J Cancer. 2017 Sep;82:247. doi: 10.1016/j.ejca.2017.06.001. Epub 2017 Jun 26. No abstract available.


Review of Soluble Biomarkers of Osteoarthritis: Lessons From Animal Models.

Legrand CB, Lambert CJ, Comblain FV, Sanchez C, Henrotin YE.

Cartilage. 2017 Jul;8(3):211-233. doi: 10.1177/1947603516656739. Epub 2016 Jul 7.


Design of experiments in medical physics: Application to the AAA beam model validation.

Dufreneix S, Legrand C, Di Bartolo C, Bremaud M, Mesgouez J, Tiplica T, Autret D.

Phys Med. 2017 Sep;41:26-32. doi: 10.1016/j.ejmp.2017.05.068. Epub 2017 Jun 2.


Allochthonous matter: an important factor shaping the phytoplankton community in the Baltic Sea.

Paczkowska J, Rowe OF, Schlüter L, Legrand C, Karlson B, Andersson A.

J Plankton Res. 2017 Jan;39(1):23-34. doi: 10.1093/plankt/fbw081. Epub 2016 Nov 26.


Local Environmental Conditions Shape Generalist But Not Specialist Components of Microbial Metacommunities in the Baltic Sea.

Lindh MV, Sjöstedt J, Casini M, Andersson A, Legrand C, Pinhassi J.

Front Microbiol. 2016 Dec 23;7:2078. doi: 10.3389/fmicb.2016.02078. eCollection 2016.


Metapopulation theory identifies biogeographical patterns among core and satellite marine bacteria scaling from tens to thousands of kilometers.

Lindh MV, Sjöstedt J, Ekstam B, Casini M, Lundin D, Hugerth LW, Hu YO, Andersson AF, Andersson A, Legrand C, Pinhassi J.

Environ Microbiol. 2017 Mar;19(3):1222-1236. doi: 10.1111/1462-2920.13650. Epub 2017 Feb 6.


The interactive microbial ocean.

Brussaard CP, Bidle KD, Pedrós-Alió C, Legrand C.

Nat Microbiol. 2016 Dec 20;2:16255. doi: 10.1038/nmicrobiol.2016.255. No abstract available.


Using next-generation DNA sequence data for genetic association tests based on allele counts with and without consideration of zero inflation.

González Silos R, Karadag Ö, Peil B, Fischer C, Kabisch M, Legrand C, Lorenzo Bermejo J.

BMC Proc. 2016 Oct 18;10(Suppl 7):397-404. eCollection 2016.


Chemical and Genetic Diversity of Nodularia spumigena from the Baltic Sea.

Mazur-Marzec H, Bertos-Fortis M, Toruńska-Sitarz A, Fidor A, Legrand C.

Mar Drugs. 2016 Nov 10;14(11). pii: E209.


Diagnostic checks in mixture cure models with interval-censoring.

Scolas S, Legrand C, Oulhaj A, El Ghouch A.

Stat Methods Med Res. 2018 Jul;27(7):2114-2131. doi: 10.1177/0962280216676502. Epub 2016 Nov 4.


Cost-effectiveness analysis in melanoma detection: A transition model applied to dermoscopy.

Tromme I, Legrand C, Devleesschauwer B, Leiter U, Suciu S, Eggermont A, Sacré L, Baurain JF, Thomas L, Beutels P, Speybroeck N.

Eur J Cancer. 2016 Nov;67:38-45. doi: 10.1016/j.ejca.2016.07.020. Epub 2016 Sep 2. Erratum in: Eur J Cancer. 2017 Sep;82:247.


[Hospital and general therapeutic patient education practices: example of diabetes and obesity in Belgium].

Pétré BO, Degrange S, Tittaferante S, Legrand C, Vanmeerbeek M, Froidcoeur X, Guillaume MH.

Sante Publique. 2016 May-Jun;28(3):287-98. French.


Electric field effects on phase transitions in the 8CB liquid crystal doped with ferroelectric nanoparticles.

Lin Y, Daoudi A, Segovia-Mera A, Dubois F, Legrand C, Douali R.

Phys Rev E. 2016 Jun;93(6):062702. doi: 10.1103/PhysRevE.93.062702. Epub 2016 Jun 3.


Unscrambling Cyanobacteria Community Dynamics Related to Environmental Factors.

Bertos-Fortis M, Farnelid HM, Lindh MV, Casini M, Andersson A, Pinhassi J, Legrand C.

Front Microbiol. 2016 May 9;7:625. doi: 10.3389/fmicb.2016.00625. eCollection 2016.


Spatio-Temporal Interdependence of Bacteria and Phytoplankton during a Baltic Sea Spring Bloom.

Bunse C, Bertos-Fortis M, Sassenhagen I, Sildever S, Sjöqvist C, Godhe A, Gross S, Kremp A, Lips I, Lundholm N, Rengefors K, Sefbom J, Pinhassi J, Legrand C.

Front Microbiol. 2016 Apr 21;7:517. doi: 10.3389/fmicb.2016.00517. eCollection 2016.


Melanoma burden by melanoma stage: Assessment through a disease transition model.

Tromme I, Legrand C, Devleesschauwer B, Leiter U, Suciu S, Eggermont A, Francart J, Calay F, Haagsma JA, Baurain JF, Thomas L, Beutels P, Speybroeck N.

Eur J Cancer. 2016 Jan;53:33-41. doi: 10.1016/j.ejca.2015.09.016. Epub 2015 Dec 13.


Allochthonous Carbon--a Major Driver of Bacterioplankton Production in the Subarctic Northern Baltic Sea.

Figueroa D, Rowe OF, Paczkowska J, Legrand C, Andersson A.

Microb Ecol. 2016 May;71(4):789-801. doi: 10.1007/s00248-015-0714-4. Epub 2015 Dec 17.


Metagenome-assembled genomes uncover a global brackish microbiome.

Hugerth LW, Larsson J, Alneberg J, Lindh MV, Legrand C, Pinhassi J, Andersson AF.

Genome Biol. 2015 Dec 14;16:279. doi: 10.1186/s13059-015-0834-7.


Variable selection in a flexible parametric mixture cure model with interval-censored data.

Scolas S, El Ghouch A, Legrand C, Oulhaj A.

Stat Med. 2016 Mar 30;35(7):1210-25. doi: 10.1002/sim.6767. Epub 2015 Oct 15.

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