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Items: 22

1. new generation phylogenetic services for non-specialists.

Lemoine F, Correia D, Lefort V, Doppelt-Azeroual O, Mareuil F, Cohen-Boulakia S, Gascuel O.

Nucleic Acids Res. 2019 Jul 2;47(W1):W260-W265. doi: 10.1093/nar/gkz303.


Accounting for ambiguity in ancestral sequence reconstruction.

Oliva A, Pulicani S, Lefort V, Bréhélin L, Gascuel O, Guindon S.

Bioinformatics. 2019 Nov 1;35(21):4290-4297. doi: 10.1093/bioinformatics/btz249.


WAVES: a web application for versatile enhanced bioinformatic services.

Chakiachvili M, Milanesi S, Arigon Chifolleau AM, Lefort V.

Bioinformatics. 2019 Jan 1;35(1):140-142. doi: 10.1093/bioinformatics/bty639.


Piperlongumine and some of its analogs inhibit selectively the human immunoproteasome over the constitutive proteasome.

Bosc E, Nastri J, Lefort V, Valli M, Contiguiba F, Pioli R, Furlan M, Bolzani VDS, El Amri C, Reboud-Ravaux M.

Biochem Biophys Res Commun. 2018 Feb 12;496(3):961-966. doi: 10.1016/j.bbrc.2018.01.100. Epub 2018 Feb 2.


SMS: Smart Model Selection in PhyML.

Lefort V, Longueville JE, Gascuel O.

Mol Biol Evol. 2017 Sep 1;34(9):2422-2424. doi: 10.1093/molbev/msx149.


Mesoscale analysis of failure in quasi-brittle materials: comparison between lattice model and acoustic emission data.

Grégoire D, Verdon L, Lefort V, Grassl P, Saliba J, Regoin JP, Loukili A, Pijaudier-Cabot G.

Int J Numer Anal Methods Geomech. 2015 Oct 25;39(15):1639-1664. Epub 2015 Mar 26.


FastME 2.0: A Comprehensive, Accurate, and Fast Distance-Based Phylogeny Inference Program.

Lefort V, Desper R, Gascuel O.

Mol Biol Evol. 2015 Oct;32(10):2798-800. doi: 10.1093/molbev/msv150. Epub 2015 Jun 30.


TCS: a web server for multiple sequence alignment evaluation and phylogenetic reconstruction.

Chang JM, Di Tommaso P, Lefort V, Gascuel O, Notredame C.

Nucleic Acids Res. 2015 Jul 1;43(W1):W3-6. doi: 10.1093/nar/gkv310. Epub 2015 Apr 8.


CompPhy: a web-based collaborative platform for comparing phylogenies.

Fiorini N, Lefort V, Chevenet F, Berry V, Chifolleau AM.

BMC Evol Biol. 2014 Dec 14;14:253. doi: 10.1186/s12862-014-0253-5.


Synthesis of {[5-(adenin-9-yl)-2-furyl]methoxy}methyl phosphonic acid and evaluations against human adenylate kinases.

Kaci M, Uttaro JP, Lefort V, Mathé C, El Amri C, Périgaud C.

Bioorg Med Chem Lett. 2014 Sep 1;24(17):4227-30. doi: 10.1016/j.bmcl.2014.07.036. Epub 2014 Jul 17.


Computational discovery of regulatory elements in a continuous expression space.

Lajoie M, Gascuel O, Lefort V, Bréhélin L.

Genome Biol. 2012 Nov 27;13(11):R109. doi: 10.1186/gb-2012-13-11-r109.


ReplacementMatrix: a web server for maximum-likelihood estimation of amino acid replacement rate matrices.

Dang CC, Lefort V, Le VS, Le QS, Gascuel O.

Bioinformatics. 2011 Oct 1;27(19):2758-60. doi: 10.1093/bioinformatics/btr435. Epub 2011 Jul 26.


New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0.

Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O.

Syst Biol. 2010 May;59(3):307-21. doi: 10.1093/sysbio/syq010. Epub 2010 Mar 29.


PhySIC_IST: cleaning source trees to infer more informative supertrees.

Scornavacca C, Berry V, Lefort V, Douzery EJ, Ranwez V.

BMC Bioinformatics. 2008 Oct 4;9:413. doi: 10.1186/1471-2105-9-413.

15. robust phylogenetic analysis for the non-specialist.

Dereeper A, Guignon V, Blanc G, Audic S, Buffet S, Chevenet F, Dufayard JF, Guindon S, Lefort V, Lescot M, Claverie JM, Gascuel O.

Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W465-9. doi: 10.1093/nar/gkn180. Epub 2008 Apr 19.


Genomics, biogeography, and the diversification of placental mammals.

Wildman DE, Uddin M, Opazo JC, Liu G, Lefort V, Guindon S, Gascuel O, Grossman LI, Romero R, Goodman M.

Proc Natl Acad Sci U S A. 2007 Sep 4;104(36):14395-400. Epub 2007 Aug 29.


Guidelines: From artificial evolution to computational evolution: a research agenda.

Banzhaf W, Beslon G, Christensen S, Foster JA, Képès F, Lefort V, Miller JF, Radman M, Ramsden JJ.

Nat Rev Genet. 2006 Sep;7(9):729-35. doi: 10.1038/nrg1921. Epub 2006 Aug 8. Review.


GPS@ bioinformatics portal: from network to EGEE grid.

Blanchet C, Lefort V, Combet C, Deléage G.

Stud Health Technol Inform. 2006;120:187-93.


Characterization of 43 non-protein-coding mRNA genes in Arabidopsis, including the MIR162a-derived transcripts.

Hirsch J, Lefort V, Vankersschaver M, Boualem A, Lucas A, Thermes C, d'Aubenton-Carafa Y, Crespi M.

Plant Physiol. 2006 Apr;140(4):1192-204. Epub 2006 Feb 24.


Etiology of chronic hepatitis in France: predominant role of hepatitis C virus.

Hammel P, Marcellin P, Martinot-Peignoux M, Pham BN, Degott C, Level R, Lefort V, Benhallem A, Erlinger S, Benhamou JP.

J Hepatol. 1994 Oct;21(4):618-23.


Hepatitis C virus infection in anti-HIV positive and negative French homosexual men with chronic hepatitis: comparison of second- and third-generation anti-HCV testing.

Marcellin P, Colin JF, Martinot-Peignoux M, Pham BN, Lefort V, Picault AB, Degott C, Erlinger S, Benhamou JP.

Liver. 1993 Dec;13(6):319-22.


Recombinant alpha interferon for chronic hepatitis B in anti-HIV positive patients receiving zidovudine.

Marcellin P, Boyer N, Colin JF, Martinot-Peignoux M, Lefort V, Matheron S, Erlinger S, Benhamou JP.

Gut. 1993;34(2 Suppl):S106.

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