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Items: 1 to 50 of 82

1.

Changes to virus taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2019).

Walker PJ, Siddell SG, Lefkowitz EJ, Mushegian AR, Dempsey DM, Dutilh BE, Harrach B, Harrison RL, Hendrickson RC, Junglen S, Knowles NJ, Kropinski AM, Krupovic M, Kuhn JH, Nibert M, Rubino L, Sabanadzovic S, Simmonds P, Varsani A, Zerbini FM, Davison AJ.

Arch Virol. 2019 Sep;164(9):2417-2429. doi: 10.1007/s00705-019-04306-w.

PMID:
31187277
2.

Gut microbiota diversity is associated with cardiorespiratory fitness in post-primary treatment breast cancer survivors.

Carter SJ, Hunter GR, Blackston JW, Liu N, Lefkowitz EJ, Van Der Pol WJ, Morrow CD, Paulsen JA, Rogers LQ.

Exp Physiol. 2019 Apr;104(4):529-539. doi: 10.1113/EP087404. Epub 2019 Feb 27.

PMID:
30763983
3.

Altered DNA Methylation in the Developing Brains of Rats Genetically Prone to High versus Low Anxiety.

McCoy CR, Glover ME, Flynn LT, Simmons RK, Cohen JL, Ptacek T, Lefkowitz EJ, Jackson NL, Akil H, Wu X, Clinton SM.

J Neurosci. 2019 Apr 17;39(16):3144-3158. doi: 10.1523/JNEUROSCI.1157-15.2019. Epub 2019 Jan 25.

4.

Additional changes to taxonomy ratified in a special vote by the International Committee on Taxonomy of Viruses (October 2018).

Siddell SG, Walker PJ, Lefkowitz EJ, Mushegian AR, Adams MJ, Dutilh BE, Gorbalenya AE, Harrach B, Harrison RL, Junglen S, Knowles NJ, Kropinski AM, Krupovic M, Kuhn JH, Nibert M, Rubino L, Sabanadzovic S, Sanfaçon H, Simmonds P, Varsani A, Zerbini FM, Davison AJ.

Arch Virol. 2019 Mar;164(3):943-946. doi: 10.1007/s00705-018-04136-2.

PMID:
30663020
5.

In Silico and Experimental Evaluation of Primer Sets for Species-Level Resolution of the Vaginal Microbiota Using 16S Ribosomal RNA Gene Sequencing.

Van Der Pol WJ, Kumar R, Morrow CD, Blanchard EE, Taylor CM, Martin DH, Lefkowitz EJ, Muzny CA.

J Infect Dis. 2019 Jan 7;219(2):305-314. doi: 10.1093/infdis/jiy508.

PMID:
30535155
6.

The diversity of the proline-rich domain of pneumococcal surface protein A (PspA): Potential relevance to a broad-spectrum vaccine.

Mukerji R, Hendrickson C, Genschmer KR, Park SS, Bouchet V, Goldstein R, Lefkowitz EJ, Briles DE.

Vaccine. 2018 Oct 29;36(45):6834-6843. doi: 10.1016/j.vaccine.2018.08.045. Epub 2018 Oct 5.

7.

The Virology of Taterapox Virus In Vitro.

Parker S, Camilo de Oliveira L, Lefkowitz EJ, Hendrickson RC, Bonjardim CA, Wold WSM, Hartzler H, Crump R, Buller RM.

Viruses. 2018 Aug 29;10(9). pii: E463. doi: 10.3390/v10090463.

8.

Midtrimester microbial DNA variations in maternal serum of women who experience spontaneous preterm birth.

Subramaniam A, Van Der Pol WJ, Ptacek T, Lobashevsky E, Neely C, Biggio JR Jr, Lefkowitz EJ, Morrow CD, Edwards RK.

J Matern Fetal Neonatal Med. 2018 Jul 22:1-9. doi: 10.1080/14767058.2018.1490721. [Epub ahead of print]

PMID:
29909752
9.

Associations Between Race, Perceived Psychological Stress, and the Gut Microbiota in a Sample of Generally Healthy Black and White Women: A Pilot Study on the Role of Race and Perceived Psychological Stress.

Carson TL, Wang F, Cui X, Jackson BE, Van Der Pol WJ, Lefkowitz EJ, Morrow C, Baskin ML.

Psychosom Med. 2018 Sep;80(7):640-648. doi: 10.1097/PSY.0000000000000614.

10.

Composition and richness of the serum microbiome differ by age and link to systemic inflammation.

Buford TW, Carter CS, VanDerPol WJ, Chen D, Lefkowitz EJ, Eipers P, Morrow CD, Bamman MM.

Geroscience. 2018 Jun;40(3):257-268. doi: 10.1007/s11357-018-0026-y. Epub 2018 Jun 5.

11.

Changes to taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2018).

King AMQ, Lefkowitz EJ, Mushegian AR, Adams MJ, Dutilh BE, Gorbalenya AE, Harrach B, Harrison RL, Junglen S, Knowles NJ, Kropinski AM, Krupovic M, Kuhn JH, Nibert ML, Rubino L, Sabanadzovic S, Sanfaçon H, Siddell SG, Simmonds P, Varsani A, Zerbini FM, Davison AJ.

Arch Virol. 2018 Sep;163(9):2601-2631. doi: 10.1007/s00705-018-3847-1. Epub 2018 May 12.

PMID:
29754305
12.

Identification of Key Bacteria Involved in the Induction of Incident Bacterial Vaginosis: A Prospective Study.

Muzny CA, Blanchard E, Taylor CM, Aaron KJ, Talluri R, Griswold ME, Redden DT, Luo M, Welsh DA, Van Der Pol WJ, Lefkowitz EJ, Martin DH, Schwebke JR.

J Infect Dis. 2018 Aug 14;218(6):966-978. doi: 10.1093/infdis/jiy243.

13.

Age and fecal microbial strain-specific differences in patients with spondyloarthritis.

Stoll ML, Weiss PF, Weiss JE, Nigrovic PA, Edelheit BS, Bridges SL Jr, Danila MI, Spencer CH, Punaro MG, Schikler K, Reiff A, Kumar R, Cron RQ, Morrow CD, Lefkowitz EJ.

Arthritis Res Ther. 2018 Jan 30;20(1):14. doi: 10.1186/s13075-018-1510-6.

14.

Streptococcus pneumoniae TIGR4 Phase-Locked Opacity Variants Differ in Virulence Phenotypes.

Oliver MB, Basu Roy A, Kumar R, Lefkowitz EJ, Swords WE.

mSphere. 2017 Nov 15;2(6). pii: e00386-17. doi: 10.1128/mSphere.00386-17. eCollection 2017 Nov-Dec.

15.

Erratum: Author Correction: Identification of donor microbe species that colonize and persist long term in the recipient after fecal transplant for recurrent Clostridium difficile.

Kumar R, Yi N, Zhi D, Eipers P, Goldsmith KT, Dixon P, Crossman DK, Crowley MR, Lefkowitz EJ, Rodriguez JM, Morrow CD.

NPJ Biofilms Microbiomes. 2017 Nov 3;3:29. doi: 10.1038/s41522-017-0037-y. eCollection 2017.

16.

Virus taxonomy: the database of the International Committee on Taxonomy of Viruses (ICTV).

Lefkowitz EJ, Dempsey DM, Hendrickson RC, Orton RJ, Siddell SG, Smith DB.

Nucleic Acids Res. 2018 Jan 4;46(D1):D708-D717. doi: 10.1093/nar/gkx932.

17.

Identification of donor microbe species that colonize and persist long term in the recipient after fecal transplant for recurrent Clostridium difficile.

Kumar R, Yi N, Zhi D, Eipers P, Goldsmith KT, Dixon P, Crossman DK, Crowley MR, Lefkowitz EJ, Rodriguez JM, Morrow CD.

NPJ Biofilms Microbiomes. 2017 Jun 7;3:12. doi: 10.1038/s41522-017-0020-7. eCollection 2017. Erratum in: NPJ Biofilms Microbiomes. 2017 Nov 3;3:29.

18.

Targeting of Streptococcus mutans Biofilms by a Novel Small Molecule Prevents Dental Caries and Preserves the Oral Microbiome.

Garcia SS, Blackledge MS, Michalek S, Su L, Ptacek T, Eipers P, Morrow C, Lefkowitz EJ, Melander C, Wu H.

J Dent Res. 2017 Jul;96(7):807-814. doi: 10.1177/0022034517698096. Epub 2017 Mar 10.

19.

Changes to taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2017).

Adams MJ, Lefkowitz EJ, King AMQ, Harrach B, Harrison RL, Knowles NJ, Kropinski AM, Krupovic M, Kuhn JH, Mushegian AR, Nibert M, Sabanadzovic S, Sanfaçon H, Siddell SG, Simmonds P, Varsani A, Zerbini FM, Gorbalenya AE, Davison AJ.

Arch Virol. 2017 Aug;162(8):2505-2538. doi: 10.1007/s00705-017-3358-5. Epub 2017 Apr 22.

PMID:
28434098
20.

Metagenomics approach to the study of the gut microbiome structure and function in zebrafish Danio rerio fed with gluten formulated diet.

Koo H, Hakim JA, Powell ML, Kumar R, Eipers PG, Morrow CD, Crowley M, Lefkowitz EJ, Watts SA, Bej AK.

J Microbiol Methods. 2017 Apr;135:69-76. doi: 10.1016/j.mimet.2017.01.016. Epub 2017 Feb 3.

21.

Consensus statement: Virus taxonomy in the age of metagenomics.

Simmonds P, Adams MJ, Benkő M, Breitbart M, Brister JR, Carstens EB, Davison AJ, Delwart E, Gorbalenya AE, Harrach B, Hull R, King AM, Koonin EV, Krupovic M, Kuhn JH, Lefkowitz EJ, Nibert ML, Orton R, Roossinck MJ, Sabanadzovic S, Sullivan MB, Suttle CA, Tesh RB, van der Vlugt RA, Varsani A, Zerbini FM.

Nat Rev Microbiol. 2017 Mar;15(3):161-168. doi: 10.1038/nrmicro.2016.177. Epub 2017 Jan 3.

PMID:
28134265
22.

50 years of the International Committee on Taxonomy of Viruses: progress and prospects.

Adams MJ, Lefkowitz EJ, King AM, Harrach B, Harrison RL, Knowles NJ, Kropinski AM, Krupovic M, Kuhn JH, Mushegian AR, Nibert ML, Sabanadzovic S, Sanfaçon H, Siddell SG, Simmonds P, Varsani A, Zerbini FM, Orton RJ, Smith DB, Gorbalenya AE, Davison AJ.

Arch Virol. 2017 May;162(5):1441-1446. doi: 10.1007/s00705-016-3215-y. Epub 2017 Jan 11.

PMID:
28078475
23.

Gut microbiota composition associated with alterations in cardiorespiratory fitness and psychosocial outcomes among breast cancer survivors.

Paulsen JA, Ptacek TS, Carter SJ, Liu N, Kumar R, Hyndman L, Lefkowitz EJ, Morrow CD, Rogers LQ.

Support Care Cancer. 2017 May;25(5):1563-1570. doi: 10.1007/s00520-016-3568-5. Epub 2017 Jan 7.

24.

Fecal metabolomics in pediatric spondyloarthritis implicate decreased metabolic diversity and altered tryptophan metabolism as pathogenic factors.

Stoll ML, Kumar R, Lefkowitz EJ, Cron RQ, Morrow CD, Barnes S.

Genes Immun. 2016 Dec;17(7):400-405. doi: 10.1038/gene.2016.38. Epub 2016 Oct 27.

25.

Midtrimester Cervicovaginal Microbiota: Identification of Microbial Variations Associated with Puerperal Infection at Term.

Subramaniam A, Ptacek T, Lobashevsky E, Cliver S, Lefkowitz EJ, Morrow CD, Biggio JR Jr, Edwards RK.

Am J Perinatol. 2016 Oct;33(12):1165-75. doi: 10.1055/s-0036-1585467. Epub 2016 Jul 21.

PMID:
27441565
26.

Ratification vote on taxonomic proposals to the International Committee on Taxonomy of Viruses (2016).

Adams MJ, Lefkowitz EJ, King AM, Harrach B, Harrison RL, Knowles NJ, Kropinski AM, Krupovic M, Kuhn JH, Mushegian AR, Nibert M, Sabanadzovic S, Sanfaçon H, Siddell SG, Simmonds P, Varsani A, Zerbini FM, Gorbalenya AE, Davison AJ.

Arch Virol. 2016 Oct;161(10):2921-49. doi: 10.1007/s00705-016-2977-6. Epub 2016 Jul 16.

PMID:
27424026
27.

The gut microbiome of the sea urchin, Lytechinus variegatus, from its natural habitat demonstrates selective attributes of microbial taxa and predictive metabolic profiles.

Hakim JA, Koo H, Kumar R, Lefkowitz EJ, Morrow CD, Powell ML, Watts SA, Bej AK.

FEMS Microbiol Ecol. 2016 Sep;92(9). pii: fiw146. doi: 10.1093/femsec/fiw146. Epub 2016 Jul 1.

28.

Culture-Independent Diagnostics for Health Security.

Doggett NA, Mukundan H, Lefkowitz EJ, Slezak TR, Chain PS, Morse S, Anderson K, Hodge DR, Pillai S.

Health Secur. 2016 May-Jun;14(3):122-42. doi: 10.1089/hs.2015.0074. Review.

PMID:
27314653
29.

Colonization potential to reconstitute a microbe community in patients detected early after fecal microbe transplant for recurrent C. difficile.

Kumar R, Maynard CL, Eipers P, Goldsmith KT, Ptacek T, Grubbs JA, Dixon P, Howard D, Crossman DK, Crowley MR, Benjamin WH Jr, Lefkowitz EJ, Weaver CT, Rodriguez JM, Morrow CD.

BMC Microbiol. 2016 Jan 13;16:5. doi: 10.1186/s12866-015-0622-2.

30.

Gravidas with class III obesity: evaluating the abdominal skin microbiota above and below the panniculus (.).

Edwards RK, Kumar R, Zhi D, Szychowski J, Subramaniam A, Lefkowitz EJ, Morrow C.

J Matern Fetal Neonatal Med. 2016 Oct;29(20):3312-6. doi: 10.3109/14767058.2015.1124081. Epub 2015 Dec 23.

31.

An abundance of Epsilonproteobacteria revealed in the gut microbiome of the laboratory cultured sea urchin, Lytechinus variegatus.

Hakim JA, Koo H, Dennis LN, Kumar R, Ptacek T, Morrow CD, Lefkowitz EJ, Powell ML, Bej AK, Watts SA.

Front Microbiol. 2015 Oct 13;6:1047. doi: 10.3389/fmicb.2015.01047. eCollection 2015.

32.

Vaginal Microbiota in Pregnancy: Evaluation Based on Vaginal Flora, Birth Outcome, and Race.

Subramaniam A, Kumar R, Cliver SP, Zhi D, Szychowski JM, Abramovici A, Biggio JR, Lefkowitz EJ, Morrow C, Edwards RK.

Am J Perinatol. 2016 Mar;33(4):401-8. doi: 10.1055/s-0035-1565919. Epub 2015 Oct 19.

33.

Quantitative Proteomic Analysis of Enriched Nuclear Fractions from BK Polyomavirus-Infected Primary Renal Proximal Tubule Epithelial Cells.

Justice JL, Verhalen B, Kumar R, Lefkowitz EJ, Imperiale MJ, Jiang M.

J Proteome Res. 2015 Oct 2;14(10):4413-24. doi: 10.1021/acs.jproteome.5b00737. Epub 2015 Sep 23.

34.

Gut Microbial Dysbiosis Due to Helicobacter Drives an Increase in Marginal Zone B Cells in the Absence of IL-10 Signaling in Macrophages.

Ray A, Basu S, Gharaibeh RZ, Cook LC, Kumar R, Lefkowitz EJ, Walker CR, Morrow CD, Franklin CL, Geiger TL, Salzman NH, Fodor A, Dittel BN.

J Immunol. 2015 Oct 1;195(7):3071-85. doi: 10.4049/jimmunol.1500153. Epub 2015 Aug 31.

35.

Comparative genome analysis of Mycoplasma pneumoniae.

Xiao L, Ptacek T, Osborne JD, Crabb DM, Simmons WL, Lefkowitz EJ, Waites KB, Atkinson TP, Dybvig K.

BMC Genomics. 2015 Aug 16;16:610. doi: 10.1186/s12864-015-1801-0.

36.

Loss of Vancomycin-Resistant Enterococcus Fecal Dominance in an Organ Transplant Patient With Clostridium difficile Colitis After Fecal Microbiota Transplant.

Stripling J, Kumar R, Baddley JW, Nellore A, Dixon P, Howard D, Ptacek T, Lefkowitz EJ, Tallaj JA, Benjamin WH Jr, Morrow CD, Rodriguez JM.

Open Forum Infect Dis. 2015 Jun 3;2(2):ofv078. doi: 10.1093/ofid/ofv078. eCollection 2015 Apr.

37.

Ratification vote on taxonomic proposals to the International Committee on Taxonomy of Viruses (2015).

Adams MJ, Lefkowitz EJ, King AM, Bamford DH, Breitbart M, Davison AJ, Ghabrial SA, Gorbalenya AE, Knowles NJ, Krell P, Lavigne R, Prangishvili D, Sanfaçon H, Siddell SG, Simmonds P, Carstens EB.

Arch Virol. 2015 Jul;160(7):1837-50. doi: 10.1007/s00705-015-2425-z.

PMID:
25913692
38.

Genome variability and gene content in chordopoxviruses: dependence on microsatellites.

Hatcher EL, Wang C, Lefkowitz EJ.

Viruses. 2015 Apr 22;7(4):2126-46. doi: 10.3390/v7042126.

39.

Tracking the changes in virus taxonomy.

Adams MJ, Hendrickson RC, Dempsey DM, Lefkowitz EJ.

Arch Virol. 2015 May;160(5):1375-83. doi: 10.1007/s00705-015-2376-4. Epub 2015 Feb 25.

PMID:
25708839
40.

Altered microbiota associated with abnormal humoral immune responses to commensal organisms in enthesitis-related arthritis.

Stoll ML, Kumar R, Morrow CD, Lefkowitz EJ, Cui X, Genin A, Cron RQ, Elson CO.

Arthritis Res Ther. 2014 Nov 30;16(6):486. doi: 10.1186/s13075-014-0486-0.

41.

Association between BVAB1 and high Nugent scores among women with bacterial vaginosis.

Muzny CA, Sunesara IR, Griswold ME, Kumar R, Lefkowitz EJ, Mena LA, Schwebke JR, Martin DH, Swiatlo E.

Diagn Microbiol Infect Dis. 2014 Dec;80(4):321-3. doi: 10.1016/j.diagmicrobio.2014.09.008. Epub 2014 Sep 16.

42.

Identification of nucleotide-level changes impacting gene content and genome evolution in orthopoxviruses.

Hatcher EL, Hendrickson RC, Lefkowitz EJ.

J Virol. 2014 Dec;88(23):13651-68. doi: 10.1128/JVI.02015-14. Epub 2014 Sep 17.

43.

Getting started with microbiome analysis: sample acquisition to bioinformatics.

Kumar R, Eipers P, Little RB, Crowley M, Crossman DK, Lefkowitz EJ, Morrow CD.

Curr Protoc Hum Genet. 2014 Jul 14;82:18.8.1-29. doi: 10.1002/0471142905.hg1808s82.

44.

Ratification vote on taxonomic proposals to the International Committee on Taxonomy of Viruses (2014).

Adams MJ, Lefkowitz EJ, King AM, Carstens EB.

Arch Virol. 2014 Oct;159(10):2831-41. doi: 10.1007/s00705-014-2114-3. Epub 2014 Jun 7.

PMID:
24906522
45.

Characterization of the vaginal microbiota among sexual risk behavior groups of women with bacterial vaginosis.

Muzny CA, Sunesara IR, Kumar R, Mena LA, Griswold ME, Martin DH, Lefkowitz EJ, Schwebke JR, Swiatlo E.

PLoS One. 2013 Nov 13;8(11):e80254. doi: 10.1371/journal.pone.0080254. eCollection 2013. Erratum in: PLoS One. 2013;8(12). doi:10.1371/annotation/f7674ab1-fbd5-4293-ad2c-d1a795962e8b. Swiatlo, Edwin [added].

46.

Expression of a non-coding RNA in ectromelia virus is required for normal plaque formation.

Esteban DJ, Upton C, Bartow-McKenney C, Buller R, Chen NG, Schriewer J, Lefkowitz EJ, Wang C.

Virus Genes. 2014 Feb;48(1):38-47.

PMID:
24078045
47.

Recently agreed changes to the International Code of Virus Classification and Nomenclature.

Adams MJ, Lefkowitz EJ, King AM, Carstens EB.

Arch Virol. 2013 Dec;158(12):2633-9. doi: 10.1007/s00705-013-1749-9. Epub 2013 Jul 9. No abstract available.

PMID:
23836393
48.

Recently agreed changes to the statutes of the International Committee on Taxonomy of Viruses.

Adams MJ, Lefkowitz EJ, King AM, Carstens EB.

Arch Virol. 2014 Jan;159(1):175-80. doi: 10.1007/s00705-013-1748-x. Epub 2013 Jul 9. No abstract available.

PMID:
23836392
49.

Orthopoxvirus genome evolution: the role of gene loss.

Hendrickson RC, Wang C, Hatcher EL, Lefkowitz EJ.

Viruses. 2010 Sep;2(9):1933-67. doi: 10.3390/v2091933. Epub 2010 Sep 15.

50.

Towards Viral Genome Annotation Standards, Report from the 2010 NCBI Annotation Workshop.

Brister JR, Bao Y, Kuiken C, Lefkowitz EJ, Le Mercier P, Leplae R, Madupu R, Scheuermann RH, Schobel S, Seto D, Shrivastava S, Sterk P, Zeng Q, Klimke W, Tatusova T.

Viruses. 2010 Oct;2(10):2258-68. doi: 10.3390/v2102258. Epub 2010 Oct 13.

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