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Items: 46

1.

DNA metabarcoding from sample fixative as a quick and voucher-preserving biodiversity assessment method.

Zizka VMA, Leese F, Peinert B, Geiger MF.

Genome. 2018 Nov 20. doi: 10.1139/gen-2018-0048. [Epub ahead of print]

PMID:
30457888
2.

Comparison of environmental DNA and bulk-sample metabarcoding using highly degenerate cytochrome c oxidase I primers.

Macher JN, Vivancos A, Piggott JJ, Centeno FC, Matthaei CD, Leese F.

Mol Ecol Resour. 2018 Nov;18(6):1456-1468. doi: 10.1111/1755-0998.12940. Epub 2018 Sep 9.

PMID:
30129704
3.

The future of biotic indices in the ecogenomic era: Integrating (e)DNA metabarcoding in biological assessment of aquatic ecosystems.

Pawlowski J, Kelly-Quinn M, Altermatt F, Apothéloz-Perret-Gentil L, Beja P, Boggero A, Borja A, Bouchez A, Cordier T, Domaizon I, Feio MJ, Filipe AF, Fornaroli R, Graf W, Herder J, van der Hoorn B, Iwan Jones J, Sagova-Mareckova M, Moritz C, Barquín J, Piggott JJ, Pinna M, Rimet F, Rinkevich B, Sousa-Santos C, Specchia V, Trobajo R, Vasselon V, Vitecek S, Zimmerman J, Weigand A, Leese F, Kahlert M.

Sci Total Environ. 2018 Oct 1;637-638:1295-1310. doi: 10.1016/j.scitotenv.2018.05.002. Epub 2018 May 22. Review.

4.

Responses of stream microbes to multiple anthropogenic stressors in a mesocosm study.

Nuy JK, Lange A, Beermann AJ, Jensen M, Elbrecht V, Röhl O, Peršoh D, Begerow D, Leese F, Boenigk J.

Sci Total Environ. 2018 Aug 15;633:1287-1301. doi: 10.1016/j.scitotenv.2018.03.077. Epub 2018 Mar 30.

5.

Estimating intraspecific genetic diversity from community DNA metabarcoding data.

Elbrecht V, Vamos EE, Steinke D, Leese F.

PeerJ. 2018 Apr 9;6:e4644. doi: 10.7717/peerj.4644. eCollection 2018.

6.

Fishing in troubled waters: Revealing genomic signatures of local adaptation in response to freshwater pollutants in two macroinvertebrates.

Weigand H, Weiss M, Cai H, Li Y, Yu L, Zhang C, Leese F.

Sci Total Environ. 2018 Aug 15;633:875-891. doi: 10.1016/j.scitotenv.2018.03.109. Epub 2018 Mar 28.

PMID:
29602123
7.

Implementation options for DNA-based identification into ecological status assessment under the European Water Framework Directive.

Hering D, Borja A, Jones JI, Pont D, Boets P, Bouchez A, Bruce K, Drakare S, Hänfling B, Kahlert M, Leese F, Meissner K, Mergen P, Reyjol Y, Segurado P, Vogler A, Kelly M.

Water Res. 2018 Jul 1;138:192-205. doi: 10.1016/j.watres.2018.03.003. Epub 2018 Mar 20. Review.

PMID:
29602086
8.

Feeding ecology in sea spiders (Arthropoda: Pycnogonida): what do we know?

Dietz L, Dömel JS, Leese F, Lehmann T, Melzer RR.

Front Zool. 2018 Mar 15;15:7. doi: 10.1186/s12983-018-0250-4. eCollection 2018. Review.

9.

Cryptic species and their utilization of indigenous and non-indigenous intermediate hosts in the acanthocephalan Polymorphus minutus sensu lato (Polymorphidae).

Zittel M, Grabner D, Wlecklik A, Sures B, Leese F, Taraschewski H, Weigand AM.

Parasitology. 2018 Sep;145(11):1421-1429. doi: 10.1017/S0031182018000173. Epub 2018 Feb 19.

PMID:
29455678
10.

Genome-wide single-nucleotide polymorphism data reveal cryptic species within cryptic freshwater snail species-The case of the Ancylus fluviatilis species complex.

Weiss M, Weigand H, Weigand AM, Leese F.

Ecol Evol. 2017 Dec 16;8(2):1063-1072. doi: 10.1002/ece3.3706. eCollection 2018 Jan.

11.

ddrage: A data set generator to evaluate ddRADseq analysis software.

Timm H, Weigand H, Weiss M, Leese F, Rahmann S.

Mol Ecol Resour. 2018 May;18(3):681-690. doi: 10.1111/1755-0998.12743. Epub 2017 Dec 27.

PMID:
29194981
12.

Sorting things out: Assessing effects of unequal specimen biomass on DNA metabarcoding.

Elbrecht V, Peinert B, Leese F.

Ecol Evol. 2017 Jul 28;7(17):6918-6926. doi: 10.1002/ece3.3192. eCollection 2017 Sep.

13.

Multiple-stressor effects on stream macroinvertebrate communities: A mesocosm experiment manipulating salinity, fine sediment and flow velocity.

Beermann AJ, Elbrecht V, Karnatz S, Ma L, Matthaei CD, Piggott JJ, Leese F.

Sci Total Environ. 2018 Jan 1;610-611:961-971. doi: 10.1016/j.scitotenv.2017.08.084. Epub 2017 Aug 19.

PMID:
28830056
14.

Deciphering the origin of mito-nuclear discordance in two sibling caddisfly species.

Weigand H, Weiss M, Cai H, Li Y, Yu L, Zhang C, Leese F.

Mol Ecol. 2017 Oct;26(20):5705-5715. doi: 10.1111/mec.14292. Epub 2017 Sep 5.

PMID:
28792677
15.

A DNA barcode library for Germany's mayflies, stoneflies and caddisflies (Ephemeroptera, Plecoptera and Trichoptera).

Morinière J, Hendrich L, Balke M, Beermann AJ, König T, Hess M, Koch S, Müller R, Leese F, Hebert PDN, Hausmann A, Schubart CD, Haszprunar G.

Mol Ecol Resour. 2017 Nov;17(6):1293-1307. doi: 10.1111/1755-0998.12683. Epub 2017 Jun 27.

PMID:
28449274
16.

RAD sequencing resolves fine-scale population structure in a benthic invertebrate: implications for understanding phenotypic plasticity.

Vendrami DL, Telesca L, Weigand H, Weiss M, Fawcett K, Lehman K, Clark MS, Leese F, McMinn C, Moore H, Hoffman JI.

R Soc Open Sci. 2017 Feb 8;4(2):160548. doi: 10.1098/rsos.160548. eCollection 2017 Feb.

17.

Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus.

Mock T, Otillar RP, Strauss J, McMullan M, Paajanen P, Schmutz J, Salamov A, Sanges R, Toseland A, Ward BJ, Allen AE, Dupont CL, Frickenhaus S, Maumus F, Veluchamy A, Wu T, Barry KW, Falciatore A, Ferrante MI, Fortunato AE, Glöckner G, Gruber A, Hipkin R, Janech MG, Kroth PG, Leese F, Lindquist EA, Lyon BR, Martin J, Mayer C, Parker M, Quesneville H, Raymond JA, Uhlig C, Valas RE, Valentin KU, Worden AZ, Armbrust EV, Clark MD, Bowler C, Green BR, Moulton V, van Oosterhout C, Grigoriev IV.

Nature. 2017 Jan 26;541(7638):536-540. doi: 10.1038/nature20803. Epub 2017 Jan 16.

18.
19.

Digital gene expression analysis with sample multiplexing and PCR duplicate detection: A straightforward protocol.

Rozenberg A, Leese F, Weiss LC, Tollrian R.

Biotechniques. 2016 Jul 1;61(1):26-32. doi: 10.2144/000114434. eCollection 2016.

PMID:
27401671
20.

Testing the potential of a ribosomal 16S marker for DNA metabarcoding of insects.

Elbrecht V, Taberlet P, Dejean T, Valentini A, Usseglio-Polatera P, Beisel JN, Coissac E, Boyer F, Leese F.

PeerJ. 2016 Apr 19;4:e1966. doi: 10.7717/peerj.1966. eCollection 2016.

21.

Drastic underestimation of amphipod biodiversity in the endangered Irano-Anatolian and Caucasus biodiversity hotspots.

Katouzian AR, Sari A, Macher JN, Weiss M, Saboori A, Leese F, Weigand AM.

Sci Rep. 2016 Mar 1;6:22507. doi: 10.1038/srep22507.

22.

Regional differentiation and extensive hybridization between mitochondrial clades of the Southern Ocean giant sea spider Colossendeis megalonyx.

Dietz L, Arango CP, Dömel JS, Halanych KM, Harder AM, Held C, Mahon AR, Mayer C, Melzer RR, Rouse GW, Weis A, Wilson NG, Leese F.

R Soc Open Sci. 2015 Jul 29;2(7):140424. doi: 10.1098/rsos.140424. eCollection 2015 Jul.

23.

Dopamine is a key regulator in the signalling pathway underlying predator-induced defences in Daphnia.

Weiss LC, Leese F, Laforsch C, Tollrian R.

Proc Biol Sci. 2015 Oct 7;282(1816):20151440. doi: 10.1098/rspb.2015.1440.

24.

Rapid evolution of chemosensory receptor genes in a pair of sibling species of orchid bees (Apidae: Euglossini).

Brand P, Ramírez SR, Leese F, Quezada-Euan JJ, Tollrian R, Eltz T.

BMC Evol Biol. 2015 Aug 28;15:176. doi: 10.1186/s12862-015-0451-9.

25.

Invaders, natives and their enemies: distribution patterns of amphipods and their microsporidian parasites in the Ruhr Metropolis, Germany.

Grabner DS, Weigand AM, Leese F, Winking C, Hering D, Tollrian R, Sures B.

Parasit Vectors. 2015 Aug 13;8:419. doi: 10.1186/s13071-015-1036-6.

26.

Transcriptional profiling of predator-induced phenotypic plasticity in Daphnia pulex.

Rozenberg A, Parida M, Leese F, Weiss LC, Tollrian R, Manak JR.

Front Zool. 2015 Jul 25;12:18. doi: 10.1186/s12983-015-0109-x. eCollection 2015.

27.

Characterization of fossilized relatives of the White Spot Syndrome Virus in genomes of decapod crustaceans.

Rozenberg A, Brand P, Rivera N, Leese F, Schubart CD.

BMC Evol Biol. 2015 Jul 19;15:142. doi: 10.1186/s12862-015-0380-7.

28.
29.

The mitochondrial genome of the Arizona Snowfly Mesocapnia arizonensis (Plecoptera, Capniidae).

Elbrecht V, Leese F.

Mitochondrial DNA A DNA Mapp Seq Anal. 2016 Sep;27(5):3365-6. doi: 10.3109/19401736.2015.1018223. Epub 2015 Mar 23.

PMID:
25799349
30.

The mitochondrial genomes of the caddisflies Sericostoma personatum and Thremma gallicum (Insecta: Trichoptera).

Dietz L, Brand P, Eschner LM, Leese F.

Mitochondrial DNA A DNA Mapp Seq Anal. 2016 Sep;27(5):3293-4. doi: 10.3109/19401736.2015.1015009. Epub 2015 Feb 25.

PMID:
25714156
31.

Assessing the phylogeographic history of the montane caddisfly Thremma gallicum using mitochondrial and restriction-site-associated DNA (RAD) markers.

Macher JN, Rozenberg A, Pauls SU, Tollrian R, Wagner R, Leese F.

Ecol Evol. 2015 Feb;5(3):648-62. doi: 10.1002/ece3.1366. Epub 2015 Jan 13.

33.

The complete mitochondrial genome of the stonefly Dinocras cephalotes (Plecoptera, Perlidae).

Elbrecht V, Poettker L, John U, Leese F.

Mitochondrial DNA. 2015 Jun;26(3):469-70. doi: 10.3109/19401736.2013.830301. Epub 2013 Sep 19.

PMID:
24047180
34.

Isolation and characterization of nine polymorphic microsatellite markers for the deep-sea shrimp Nematocarcinus lanceopes (Crustacea: Decapoda: Caridea).

Dambach J, Raupach MJ, Mayer C, Schwarzer J, Leese F.

BMC Res Notes. 2013 Mar 1;6:75. doi: 10.1186/1756-0500-6-75.

35.

Exploring Pandora's box: potential and pitfalls of low coverage genome surveys for evolutionary biology.

Leese F, Brand P, Rozenberg A, Mayer C, Agrawal S, Dambach J, Dietz L, Doemel JS, Goodall-Copstake WP, Held C, Jackson JA, Lampert KP, Linse K, Macher JN, Nolzen J, Raupach MJ, Rivera NT, Schubart CD, Striewski S, Tollrian R, Sands CJ.

PLoS One. 2012;7(11):e49202. doi: 10.1371/journal.pone.0049202. Epub 2012 Nov 21.

36.

Diversification and molecular evolution of ATOH8, a gene encoding a bHLH transcription factor.

Chen J, Dai F, Balakrishnan-Renuka A, Leese F, Schempp W, Schaller F, Hoffmann MM, Morosan-Puopolo G, Yusuf F, Bisschoff IJ, Chankiewitz V, Xue J, Chen J, Ying K, Brand-Saberi B.

PLoS One. 2011;6(8):e23005. doi: 10.1371/journal.pone.0023005. Epub 2011 Aug 4.

37.

Molecular evolution of a chordate specific family of G protein-coupled receptors.

Kurtenbach S, Mayer C, Pelz T, Hatt H, Leese F, Neuhaus EM.

BMC Evol Biol. 2011 Aug 9;11:234. doi: 10.1186/1471-2148-11-234.

38.

Permanent genetic resources added to Molecular Ecology Resources Database 1 August 2010-30 September 2010.

Molecular Ecology Resources Primer Development Consortium, Aggarwal RK, Allainguillaume J, Bajay MM, Barthwal S, Bertolino P, Chauhan P, Consuegra S, Croxford A, Dalton DL, den Belder E, Díaz-Ferguson E, Douglas MR, Drees M, Elderson J, Esselink GD, Fernández-Manjarrés JF, Frascaria-Lacoste N, Gäbler-Schwarz S, Garcia de Leaniz C, Ginwal HS, Goodisman MA, Guo B, Hamilton MB, Hayes PK, Hong Y, Kajita T, Kalinowski ST, Keller L, Koop BF, Kotzé A, Lalremruata A, Leese F, Li C, Liew WY, Martinelli S, Matthews EA, Medlin LK, Messmer AM, Meyer EI, Monteiro M, Moyer GR, Nelson RJ, Nguyen TT, Omoto C, Ono J, Pavinato VA, Pearcy M, Pinheiro JB, Power LD, Rawat A, Reusch TB, Sanderson D, Sannier J, Sathe S, Sheridan CK, Smulders MJ, Sukganah A, Takayama K, Tamura M, Tateishi Y, Vanhaecke D, Vu NV, Wickneswari R, Williams AS, Wimp GM, Witte V, Zucchi MI.

Mol Ecol Resour. 2011 Jan;11(1):219-22. doi: 10.1111/j.1755-0998.2010.02944.x.

PMID:
21429127
39.

The mitochondrial genome of Colossendeis megalonyx supports a basal position of Colossendeidae within the Pycnogonida.

Dietz L, Mayer C, Arango CP, Leese F.

Mol Phylogenet Evol. 2011 Mar;58(3):553-8. doi: 10.1016/j.ympev.2010.12.016. Epub 2010 Dec 31.

PMID:
21195785
40.

Predator-induced defences in Daphnia pulex: selection and evaluation of internal reference genes for gene expression studies with real-time PCR.

Spanier KI, Leese F, Mayer C, Colbourne JK, Gilbert D, Pfrender ME, Tollrian R.

BMC Mol Biol. 2010 Jun 29;11:50. doi: 10.1186/1471-2199-11-50.

41.

Ecological genomics: steps towards unraveling the genetic basis of inducible defenses in Daphnia.

Tollrian R, Leese F.

BMC Biol. 2010 May 7;8:51. doi: 10.1186/1741-7007-8-51. Review.

42.

Long-distance island hopping without dispersal stages: transportation across major zoogeographic barriers in a Southern Ocean isopod.

Leese F, Agrawal S, Held C.

Naturwissenschaften. 2010 Jun;97(6):583-94. doi: 10.1007/s00114-010-0674-y. Epub 2010 May 8.

PMID:
20454771
43.

Genome-wide analysis of tandem repeats in Daphnia pulex--a comparative approach.

Mayer C, Leese F, Tollrian R.

BMC Genomics. 2010 Apr 30;11:277. doi: 10.1186/1471-2164-11-277.

44.

STAMP: Extensions to the STADEN sequence analysis package for high throughput interactive microsatellite marker design.

Kraemer L, Beszteri B, Gäbler-Schwarz S, Held C, Leese F, Mayer C, Pöhlmann K, Frickenhaus S.

BMC Bioinformatics. 2009 Jan 30;10:41. doi: 10.1186/1471-2105-10-41.

45.
46.

Isolation and characterization of microsatellite markers from the marine isopods Serolis paradoxa and Septemserolis septemcarinata (Crustacea: Peracarida).

Leese F, Kop A, Agrawal S, Held C.

Mol Ecol Resour. 2008 Jul;8(4):818-21. doi: 10.1111/j.1755-0998.2007.02078.x.

PMID:
21585901

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