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Items: 19

1.

Plasmid Dissemination and Selection of a Multidrug-Resistant Klebsiella pneumoniae Strain during Transplant-Associated Antibiotic Therapy.

Conlan S, Lau AF, Deming C, Spalding CD, Lee-Lin S, Thomas PJ, Park M, Dekker JP, Frank KM, Palmore TN, Segre JA.

MBio. 2019 Oct 8;10(5). pii: e00652-19. doi: 10.1128/mBio.00652-19.

2.

Investigation of a Cluster of Sphingomonas koreensis Infections.

Johnson RC, Deming C, Conlan S, Zellmer CJ, Michelin AV, Lee-Lin S, Thomas PJ, Park M, Weingarten RA, Less J, Dekker JP, Frank KM, Musser KA, McQuiston JR, Henderson DK, Lau AF, Palmore TN, Segre JA.

N Engl J Med. 2018 Dec 27;379(26):2529-2539. doi: 10.1056/NEJMoa1803238.

3.

Expanded skin virome in DOCK8-deficient patients.

Tirosh O, Conlan S, Deming C, Lee-Lin SQ, Huang X; NISC Comparative Sequencing Program, Su HC, Freeman AF, Segre JA, Kong HH.

Nat Med. 2018 Dec;24(12):1815-1821. doi: 10.1038/s41591-018-0211-7. Epub 2018 Nov 5.

4.

Evidence that synthetic lethality underlies the mutual exclusivity of oncogenic KRAS and EGFR mutations in lung adenocarcinoma.

Unni AM, Lockwood WW, Zejnullahu K, Lee-Lin SQ, Varmus H.

Elife. 2015 Jun 5;4:e06907. doi: 10.7554/eLife.06907.

5.

Identification of candidate genes involved in coronary artery calcification by transcriptome sequencing of cell lines.

Sen SK, Barb JJ, Cherukuri PF, Accame DS, Elkahloun AG, Singh LN, Lee-Lin SQ; NISC Comparative Sequencing Program, Kolodgie FD, Cheng Q, Zhao X, Chen MY, Arai AE, Green ED, Mullikin JC, Munson PJ, Biesecker LG.

BMC Genomics. 2014 Mar 14;15:198. doi: 10.1186/1471-2164-15-198.

6.

Balancing selection maintains a form of ERAP2 that undergoes nonsense-mediated decay and affects antigen presentation.

Andrés AM, Dennis MY, Kretzschmar WW, Cannons JL, Lee-Lin SQ, Hurle B; NISC Comparative Sequencing Program, Schwartzberg PL, Williamson SH, Bustamante CD, Nielsen R, Clark AG, Green ED.

PLoS Genet. 2010 Oct 14;6(10):e1001157. doi: 10.1371/journal.pgen.1001157.

7.

Identification of neural crest and glial enhancers at the mouse Sox10 locus through transgenesis in zebrafish.

Antonellis A, Huynh JL, Lee-Lin SQ, Vinton RM, Renaud G, Loftus SK, Elliot G, Wolfsberg TG, Green ED, McCallion AS, Pavan WJ.

PLoS Genet. 2008 Sep 5;4(9):e1000174. doi: 10.1371/journal.pgen.1000174.

8.

Functional analyses of glycyl-tRNA synthetase mutations suggest a key role for tRNA-charging enzymes in peripheral axons.

Antonellis A, Lee-Lin SQ, Wasterlain A, Leo P, Quezado M, Goldfarb LG, Myung K, Burgess S, Fischbeck KH, Green ED.

J Neurosci. 2006 Oct 11;26(41):10397-406.

9.

Deletion of long-range sequences at Sox10 compromises developmental expression in a mouse model of Waardenburg-Shah (WS4) syndrome.

Antonellis A, Bennett WR, Menheniott TR, Prasad AB, Lee-Lin SQ; NISC Comparative Sequencing Program, Green ED, Paisley D, Kelsh RN, Pavan WJ, Ward A.

Hum Mol Genet. 2006 Jan 15;15(2):259-71. Epub 2005 Dec 5.

PMID:
16330480
10.

Comparative analyses of multi-species sequences from targeted genomic regions.

Thomas JW, Touchman JW, Blakesley RW, Bouffard GG, Beckstrom-Sternberg SM, Margulies EH, Blanchette M, Siepel AC, Thomas PJ, McDowell JC, Maskeri B, Hansen NF, Schwartz MS, Weber RJ, Kent WJ, Karolchik D, Bruen TC, Bevan R, Cutler DJ, Schwartz S, Elnitski L, Idol JR, Prasad AB, Lee-Lin SQ, Maduro VV, Summers TJ, Portnoy ME, Dietrich NL, Akhter N, Ayele K, Benjamin B, Cariaga K, Brinkley CP, Brooks SY, Granite S, Guan X, Gupta J, Haghighi P, Ho SL, Huang MC, Karlins E, Laric PL, Legaspi R, Lim MJ, Maduro QL, Masiello CA, Mastrian SD, McCloskey JC, Pearson R, Stantripop S, Tiongson EE, Tran JT, Tsurgeon C, Vogt JL, Walker MA, Wetherby KD, Wiggins LS, Young AC, Zhang LH, Osoegawa K, Zhu B, Zhao B, Shu CL, De Jong PJ, Lawrence CE, Smit AF, Chakravarti A, Haussler D, Green P, Miller W, Green ED.

Nature. 2003 Aug 14;424(6950):788-93.

PMID:
12917688
11.

Glycyl tRNA synthetase mutations in Charcot-Marie-Tooth disease type 2D and distal spinal muscular atrophy type V.

Antonellis A, Ellsworth RE, Sambuughin N, Puls I, Abel A, Lee-Lin SQ, Jordanova A, Kremensky I, Christodoulou K, Middleton LT, Sivakumar K, Ionasescu V, Funalot B, Vance JM, Goldfarb LG, Fischbeck KH, Green ED.

Am J Hum Genet. 2003 May;72(5):1293-9. Epub 2003 Apr 10.

12.

Pericentromeric duplications in the laboratory mouse.

Thomas JW, Schueler MG, Summers TJ, Blakesley RW, McDowell JC, Thomas PJ, Idol JR, Maduro VV, Lee-Lin SQ, Touchman JW, Bouffard GG, Beckstrom-Sternberg SM; NISC Comparative Sequencing Program, Green ED.

Genome Res. 2003 Jan;13(1):55-63.

13.

Parallel construction of orthologous sequence-ready clone contig maps in multiple species.

Thomas JW, Prasad AB, Summers TJ, Lee-Lin SQ, Maduro VV, Idol JR, Ryan JF, Thomas PJ, McDowell JC, Green ED.

Genome Res. 2002 Aug;12(8):1277-85.

14.

Comparative physical mapping of targeted regions of the rat genome.

Summers TJ, Thomas JW, Lee-Lin SQ, Maduro VV, Idol JR, Green ED.

Mamm Genome. 2001 Jul;12(7):508-12.

PMID:
11420612
15.

Comparative genome mapping in the sequence-based era: early experience with human chromosome 7.

Thomas JW, Summers TJ, Lee-Lin SQ, Maduro VV, Idol JR, Mastrian SD, Ryan JF, Jamison DC, Green ED.

Genome Res. 2000 May;10(5):624-33. Review.

16.

Mutations in the gene encoding KRIT1, a Krev-1/rap1a binding protein, cause cerebral cavernous malformations (CCM1).

Sahoo T, Johnson EW, Thomas JW, Kuehl PM, Jones TL, Dokken CG, Touchman JW, Gallione CJ, Lee-Lin SQ, Kosofsky B, Kurth JH, Louis DN, Mettler G, Morrison L, Gil-Nagel A, Rich SS, Zabramski JM, Boguski MS, Green ED, Marchuk DA.

Hum Mol Genet. 1999 Nov;8(12):2325-33.

PMID:
10545614
17.

Human-mouse comparative mapping of the genomic region containing CDK6: localization of an evolutionary breakpoint.

Thomas JW, Lee-Lin SQ, Green ED.

Mamm Genome. 1999 Jul;10(7):764-7. No abstract available.

PMID:
10384057
18.

Transplantation of transduced nonhuman primate CD34+ cells using a gibbon ape leukemia virus vector: restricted expression of the gibbon ape leukemia virus receptor to a subset of CD34+ cells.

Bunnell BA, Kluge KA, Lee-Lin SQ, Byrne ER, Orlic D, Metzger ME, Agricola BA, Wersto RP, Bodine DM, Morgan RA, Donahue RE.

Gene Ther. 1999 Jan;6(1):48-56.

19.

Cloning of the BamHI methyl transferase gene from Bacillus amyloliquefaciens.

Connaughton JF, Vanek PG, Lee-Lin SQ, Chirikjian JG.

Gene Anal Tech. 1988 Nov-Dec;5(6):116-24.

PMID:
3063644

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