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Tally-2.0: upgraded validator of tandem repeat detection in protein sequences.

Perovic V, Leclercq JY, Sumonja N, Richard FD, Veljkovic N, Kajava AV.

Bioinformatics. 2020 Feb 25. pii: btaa121. doi: 10.1093/bioinformatics/btaa121. [Epub ahead of print]


DisProt: intrinsic protein disorder annotation in 2020.

Hatos A, Hajdu-Soltész B, Monzon AM, Palopoli N, Álvarez L, Aykac-Fas B, Bassot C, Benítez GI, Bevilacqua M, Chasapi A, Chemes L, Davey NE, Davidović R, Dunker AK, Elofsson A, Gobeill J, Foutel NSG, Sudha G, Guharoy M, Horvath T, Iglesias V, Kajava AV, Kovacs OP, Lamb J, Lambrughi M, Lazar T, Leclercq JY, Leonardi E, Macedo-Ribeiro S, Macossay-Castillo M, Maiani E, Manso JA, Marino-Buslje C, Martínez-Pérez E, Mészáros B, Mičetić I, Minervini G, Murvai N, Necci M, Ouzounis CA, Pajkos M, Paladin L, Pancsa R, Papaleo E, Parisi G, Pasche E, Barbosa Pereira PJ, Promponas VJ, Pujols J, Quaglia F, Ruch P, Salvatore M, Schad E, Szabo B, Szaniszló T, Tamana S, Tantos A, Veljkovic N, Ventura S, Vranken W, Dosztányi Z, Tompa P, Tosatto SCE, Piovesan D.

Nucleic Acids Res. 2020 Jan 8;48(D1):D269-D276. doi: 10.1093/nar/gkz975.


Maternally regulated gastrulation as a source of variation contributing to cavefish forebrain evolution.

Torres-Paz J, Leclercq J, Rétaux S.

Elife. 2019 Oct 31;8. pii: e50160. doi: 10.7554/eLife.50160.


Small Area Estimates of Populations With Chronic Conditions for Community Preparedness for Public Health Emergencies.

Holt JB, Matthews KA, Lu H, Wang Y, LeClercq JM, Greenlund KJ, Thomas CW.

Am J Public Health. 2019 Sep;109(S4):S325-S331. doi: 10.2105/AJPH.2019.305241.


The Impact of Equine-Assisted Therapy on Equine Behavioral and Physiological Responses.

Mendonça T, Bienboire-Frosini C, Menuge F, Leclercq J, Lafont-Lecuelle C, Arroub S, Pageat P.

Animals (Basel). 2019 Jul 1;9(7). pii: E409. doi: 10.3390/ani9070409.


Evolutionary transcriptomics reveals the origins of olives and the genomic changes associated with their domestication.

Gros-Balthazard M, Besnard G, Sarah G, Holtz Y, Leclercq J, Santoni S, Wegmann D, Glémin S, Khadari B.

Plant J. 2019 Oct;100(1):143-157. doi: 10.1111/tpj.14435. Epub 2019 Jul 11.


Equine Activities Influence Horses' Responses to Different Stimuli: Could This Have an Impact on Equine Welfare?

Mendonça T, Bienboire-Frosini C, Kowalczyk I, Leclercq J, Arroub S, Pageat P.

Animals (Basel). 2019 May 29;9(6). pii: E290. doi: 10.3390/ani9060290.


Genome-wide analysis in Hevea brasiliensis laticifers revealed species-specific post-transcriptional regulations of several redox-related genes.

Zhang Y, Leclercq J, Wu S, Ortega-Abboud E, Pointet S, Tang C, Hu S, Montoro P.

Sci Rep. 2019 Apr 5;9(1):5701. doi: 10.1038/s41598-019-42197-8.


Transcriptome analysis in Hevea brasiliensis latex revealed changes in hormone signalling pathways during ethephon stimulation and consequent Tapping Panel Dryness.

Montoro P, Wu S, Favreau B, Herlinawati E, Labrune C, Martin-Magniette ML, Pointet S, Rio M, Leclercq J, Ismawanto S, Kuswanhadi.

Sci Rep. 2018 May 31;8(1):8483. doi: 10.1038/s41598-018-26854-y.


Fabrication of self-rolling geodesic objects and photonic crystal tubes.

Danescu A, Regreny P, Cremillieu P, Leclercq JL.

Nanotechnology. 2018 Jul 13;29(28):285301. doi: 10.1088/1361-6528/aabf54. Epub 2018 May 10.


Symmetry Breaking in Photonic Crystals: On-Demand Dispersion from Flatband to Dirac Cones.

Nguyen HS, Dubois F, Deschamps T, Cueff S, Pardon A, Leclercq JL, Seassal C, Letartre X, Viktorovitch P.

Phys Rev Lett. 2018 Feb 9;120(6):066102. doi: 10.1103/PhysRevLett.120.066102.


Providing straw to allow exploratory behaviour in a pig experimental system does not modify putative indicators of positive welfare: peripheral oxytocin and serotonin.

Marcet Rius M, Cozzi A, Bienboire-Frosini C, Teruel E, Chabaud C, Monneret P, Leclercq J, Lafont-Lecuelle C, Pageat P.

Animal. 2018 Oct;12(10):2138-2146. doi: 10.1017/S175173111800006X. Epub 2018 Jan 22.


Overexpression of Hevea brasiliensis ethylene response factor HbERF-IXc5 enhances growth and tolerance to abiotic stress and affects laticifer differentiation.

Lestari R, Rio M, Martin F, Leclercq J, Woraathasin N, Roques S, Dessailly F, Clément-Vidal A, Sanier C, Fabre D, Melliti S, Suharsono S, Montoro P.

Plant Biotechnol J. 2018 Jan;16(1):322-336. doi: 10.1111/pbi.12774. Epub 2017 Sep 2.


Surrogate End Points for Overall Survival in Loco-Regionally Advanced Nasopharyngeal Carcinoma: An Individual Patient Data Meta-analysis.

Rotolo F, Pignon JP, Bourhis J, Marguet S, Leclercq J, Tong Ng W, Ma J, Chan AT, Huang PY, Zhu G, Chua DT, Chen Y, Mai HQ, Kwong DL, Soong YL, Moon J, Tung Y, Chi KH, Fountzilas G, Zhang L, Hui EP, Lee AW, Blanchard P, Michiels S; MAC-NPC Collaborative Group.

J Natl Cancer Inst. 2017 Apr;109(4). pii: djw239.


Reactive oxygen species in Hevea brasiliensis latex and relevance to Tapping Panel Dryness.

Zhang Y, Leclercq J, Montoro P.

Tree Physiol. 2017 Feb 1;37(2):261-269. doi: 10.1093/treephys/tpw106.


Synthesis and Biological Evaluation of N-[2-(4-Hydroxyphenylamino)-pyridin-3-yl]-4-methoxy-benzenesulfonamide (ABT-751) Tricyclic Analogues as Antimitotic and Antivascular Agents with Potent in Vivo Antitumor Activity.

Segaoula Z, Leclercq J, Verones V, Flouquet N, Lecoeur M, Ach L, Renault N, Barczyk A, Melnyk P, Berthelot P, Thuru X, Lebegue N.

J Med Chem. 2016 Sep 22;59(18):8422-40. doi: 10.1021/acs.jmedchem.6b00847. Epub 2016 Aug 30.


Expression Profiles, Characterization and Function of HbTCTP in Rubber Tree (Hevea brasiliensis).

Deng Z, Chen J, Leclercq J, Zhou Z, Liu C, Liu H, Yang H, Montoro P, Xia Z, Li D.

Front Plant Sci. 2016 Jun 7;7:789. doi: 10.3389/fpls.2016.00789. eCollection 2016.


Expression analysis of ROS producing and scavenging enzyme-encoding genes in rubber tree infected by Pseudocercospora ulei.

Koop DM, Rio M, Sabau X, Almeida Cardoso SE, Cazevieille C, Leclercq J, Garcia D.

Plant Physiol Biochem. 2016 Jul;104:188-99. doi: 10.1016/j.plaphy.2016.03.022. Epub 2016 Mar 21.


Synthesis of triazoloquinazolinone based compounds as tubulin polymerization inhibitors and vascular disrupting agents.

Driowya M, Leclercq J, Verones V, Barczyk A, Lecoeur M, Renault N, Flouquet N, Ghinet A, Berthelot P, Lebegue N.

Eur J Med Chem. 2016 Jun 10;115:393-405. doi: 10.1016/j.ejmech.2016.03.056. Epub 2016 Mar 22.


Combined effect of Cd and Pb spiked field soils on bioaccumulation, DNA damage, and peroxidase activities in Trifolium repens.

Lanier C, Bernard F, Dumez S, Leclercq J, Lemière S, Vandenbulcke F, Nesslany F, Platel A, Devred I, Cuny D, Deram A.

Environ Sci Pollut Res Int. 2016 Jan;23(2):1755-67. doi: 10.1007/s11356-015-5414-6. Epub 2015 Sep 23.


Involvement of Ethylene in the Latex Metabolism and Tapping Panel Dryness of Hevea brasiliensis.

Putranto RA, Herlinawati E, Rio M, Leclercq J, Piyatrakul P, Gohet E, Sanier C, Oktavia F, Pirrello J, Kuswanhadi, Montoro P.

Int J Mol Sci. 2015 Aug 4;16(8):17885-908. doi: 10.3390/ijms160817885.


Development of a new pCAMBIA binary vector using Gateway® technology.

Leclercq J, Szabolcs T, Martin F, Montoro P.

Plasmid. 2015 Sep;81:50-4. doi: 10.1016/j.plasmid.2015.07.003. Epub 2015 Jul 23.


Chemotherapy and radiotherapy in nasopharyngeal carcinoma: an update of the MAC-NPC meta-analysis.

Blanchard P, Lee A, Marguet S, Leclercq J, Ng WT, Ma J, Chan AT, Huang PY, Benhamou E, Zhu G, Chua DT, Chen Y, Mai HQ, Kwong DL, Cheah SL, Moon J, Tung Y, Chi KH, Fountzilas G, Zhang L, Hui EP, Lu TX, Bourhis J, Pignon JP; MAC-NPC Collaborative Group.

Lancet Oncol. 2015 Jun;16(6):645-55. doi: 10.1016/S1470-2045(15)70126-9. Epub 2015 May 6.


Ethylene Response Factors Are Controlled by Multiple Harvesting Stresses in Hevea brasiliensis.

Putranto RA, Duan C, Kuswanhadi, Chaidamsari T, Rio M, Piyatrakul P, Herlinawati E, Pirrello J, Dessailly F, Leclercq J, Bonnot F, Tang C, Hu S, Montoro P.

PLoS One. 2015 Apr 23;10(4):e0123618. doi: 10.1371/journal.pone.0123618. eCollection 2015.


Low response rate after cetuximab combined with conventional chemoradiotherapy in patients with locally advanced anal cancer: long-term results of the UNICANCER ACCORD 16 phase II trial.

Levy A, Azria D, Pignon JP, Delarochefordiere A, Martel-Lafay I, Rio E, Malka D, Conroy T, Miglianico L, Becouarn Y, Malekzadeh K, Leclercq J, Juzyna B, Ezra P, Lemanski C, Deutsch E.

Radiother Oncol. 2015 Mar;114(3):415-6. doi: 10.1016/j.radonc.2015.02.008. Epub 2015 Mar 11. No abstract available.


Transcriptional and post-transcriptional regulation of the jasmonate signalling pathway in response to abiotic and harvesting stress in Hevea brasiliensis.

Pirrello J, Leclercq J, Dessailly F, Rio M, Piyatrakul P, Kuswanhadi K, Tang C, Montoro P.

BMC Plant Biol. 2014 Dec 2;14:341. doi: 10.1186/s12870-014-0341-0.


The coffee genome provides insight into the convergent evolution of caffeine biosynthesis.

Denoeud F, Carretero-Paulet L, Dereeper A, Droc G, Guyot R, Pietrella M, Zheng C, Alberti A, Anthony F, Aprea G, Aury JM, Bento P, Bernard M, Bocs S, Campa C, Cenci A, Combes MC, Crouzillat D, Da Silva C, Daddiego L, De Bellis F, Dussert S, Garsmeur O, Gayraud T, Guignon V, Jahn K, Jamilloux V, Joët T, Labadie K, Lan T, Leclercq J, Lepelley M, Leroy T, Li LT, Librado P, Lopez L, Muñoz A, Noel B, Pallavicini A, Perrotta G, Poncet V, Pot D, Priyono, Rigoreau M, Rouard M, Rozas J, Tranchant-Dubreuil C, VanBuren R, Zhang Q, Andrade AC, Argout X, Bertrand B, de Kochko A, Graziosi G, Henry RJ, Jayarama, Ming R, Nagai C, Rounsley S, Sankoff D, Giuliano G, Albert VA, Wincker P, Lashermes P.

Science. 2014 Sep 5;345(6201):1181-4. doi: 10.1126/science.1255274. Epub 2014 Sep 4.


Pulmonary vein isolation with a new multipolar irrigated radiofrequency ablation catheter (nMARQ™): feasibility, acute and short-term efficacy, safety, and impact on postablation silent cerebral ischemia.

Scaglione M, Caponi D, Anselmino M, Di Clemente F, Blandino A, Ferraris F, Di Donna P, Ebrille E, Halimi F, Leclercq JF, Iunco C, Vaudagna C, Cesarani F, Gaita F.

J Cardiovasc Electrophysiol. 2014 Dec;25(12):1299-305. doi: 10.1111/jce.12500. Epub 2014 Sep 14.


Sequence and expression analyses of ethylene response factors highly expressed in latex cells from Hevea brasiliensis.

Piyatrakul P, Yang M, Putranto RA, Pirrello J, Dessailly F, Hu S, Summo M, Theeravatanasuk K, Leclercq J, Kuswanhadi, Montoro P.

PLoS One. 2014 Jun 27;9(6):e99367. doi: 10.1371/journal.pone.0099367. eCollection 2014.


Does periprocedural anticoagulation management of atrial fibrillation affect the prevalence of silent thromboembolic lesion detected by diffusion cerebral magnetic resonance imaging in patients undergoing radiofrequency atrial fibrillation ablation with open irrigated catheters? Results from a prospective multicenter study.

Di Biase L, Gaita F, Toso E, Santangeli P, Mohanty P, Rutledge N, Yan X, Mohanty S, Trivedi C, Bai R, Price J, Horton R, Gallinghouse GJ, Beheiry S, Zagrodzky J, Canby R, Leclercq JF, Halimi F, Scaglione M, Cesarani F, Faletti R, Sanchez J, Burkhardt JD, Natale A.

Heart Rhythm. 2014 May;11(5):791-8. doi: 10.1016/j.hrthm.2014.03.003. Epub 2014 Mar 4.


Evaluation of time course and predicting factors of progression of paroxysmal or persistent atrial fibrillation to permanent atrial fibrillation.

DE Sisti A, Leclercq JF, Halimi F, Fiorello P, Bertrand C, Attuel P.

Pacing Clin Electrophysiol. 2014 Mar;37(3):345-55. doi: 10.1111/pace.12264. Epub 2013 Nov 14.


The small RNA profile in latex from Hevea brasiliensis trees is affected by tapping panel dryness.

Gébelin V, Leclercq J, Kuswanhadi, Argout X, Chaidamsari T, Hu S, Tang C, Sarah G, Yang M, Montoro P.

Tree Physiol. 2013 Oct;33(10):1084-98. doi: 10.1093/treephys/tpt076. Epub 2013 Nov 10.


Strong confinement of light in low index materials: the Photon Cage.

Sieutat C, Peretti R, Leclercq JL, Viktorovitch P, Letartre X.

Opt Express. 2013 Aug 26;21(17):20015-22. doi: 10.1364/OE.21.020015.


Regulation of MIR genes in response to abiotic stress in Hevea brasiliensis.

Gébelin V, Leclercq J, Hu S, Tang C, Montoro P.

Int J Mol Sci. 2013 Sep 27;14(10):19587-604. doi: 10.3390/ijms141019587.


[The coexistence of a para hisian accessory pathway and a complete atrioventricular block in a 32 years old patient].

Petipe Kappe C, Halimi F, Leclercq JF.

Ann Cardiol Angeiol (Paris). 2015 Feb;64(1):48-50. doi: 10.1016/j.ancard.2013.03.009. Epub 2013 May 24. French.


Identification of the Hevea brasiliensis AP2/ERF superfamily by RNA sequencing.

Duan C, Argout X, Gébelin V, Summo M, Dufayard JF, Leclercq J, Kuswanhadi, Piyatrakul P, Pirrello J, Rio M, Champion A, Montoro P.

BMC Genomics. 2013 Jan 16;14:30. doi: 10.1186/1471-2164-14-30.


Some ethylene biosynthesis and AP2/ERF genes reveal a specific pattern of expression during somatic embryogenesis in Hevea brasiliensis.

Piyatrakul P, Putranto RA, Martin F, Rio M, Dessailly F, Leclercq J, Dufayard JF, Lardet L, Montoro P.

BMC Plant Biol. 2012 Dec 26;12:244. doi: 10.1186/1471-2229-12-244.


Over-expression of a cytosolic isoform of the HbCuZnSOD gene in Hevea brasiliensis changes its response to a water deficit.

Leclercq J, Martin F, Sanier C, Clément-Vidal A, Fabre D, Oliver G, Lardet L, Ayar A, Peyramard M, Montoro P.

Plant Mol Biol. 2012 Oct;80(3):255-72. doi: 10.1007/s11103-012-9942-x. Epub 2012 Jul 20.


The banana (Musa acuminata) genome and the evolution of monocotyledonous plants.

D'Hont A, Denoeud F, Aury JM, Baurens FC, Carreel F, Garsmeur O, Noel B, Bocs S, Droc G, Rouard M, Da Silva C, Jabbari K, Cardi C, Poulain J, Souquet M, Labadie K, Jourda C, Lengellé J, Rodier-Goud M, Alberti A, Bernard M, Correa M, Ayyampalayam S, Mckain MR, Leebens-Mack J, Burgess D, Freeling M, Mbéguié-A-Mbéguié D, Chabannes M, Wicker T, Panaud O, Barbosa J, Hribova E, Heslop-Harrison P, Habas R, Rivallan R, Francois P, Poiron C, Kilian A, Burthia D, Jenny C, Bakry F, Brown S, Guignon V, Kema G, Dita M, Waalwijk C, Joseph S, Dievart A, Jaillon O, Leclercq J, Argout X, Lyons E, Almeida A, Jeridi M, Dolezel J, Roux N, Risterucci AM, Weissenbach J, Ruiz M, Glaszmann JC, Quétier F, Yahiaoui N, Wincker P.

Nature. 2012 Aug 9;488(7410):213-7. doi: 10.1038/nature11241.


Anti-inflammatory effects of pomegranate (Punica granatum L.) husk ellagitannins in Caco-2 cells, an in vitro model of human intestine.

Hollebeeck S, Winand J, Hérent MF, During A, Leclercq J, Larondelle Y, Schneider YJ.

Food Funct. 2012 Aug;3(8):875-85. doi: 10.1039/c2fo10258g. Epub 2012 Jun 26.


Identification of novel microRNAs in Hevea brasiliensis and computational prediction of their targets.

Gébelin V, Argout X, Engchuan W, Pitollat B, Duan C, Montoro P, Leclercq J.

BMC Plant Biol. 2012 Feb 13;12:18. doi: 10.1186/1471-2229-12-18.


Differential gene expression in different types of Hevea brasiliensis roots.

Putranto RA, Sanier C, Leclercq J, Duan C, Rio M, Jourdan C, Thaler P, Sabau X, Argout X, Montoro P.

Plant Sci. 2012 Feb;183:149-58. doi: 10.1016/j.plantsci.2011.08.005. Epub 2011 Aug 24.


Single kaolinite nanometer layers prepared by an in situ polymerization-exfoliation process in the presence of ionic liquids.

Letaief S, Leclercq J, Liu Y, Detellier C.

Langmuir. 2011 Dec 20;27(24):15248-54. doi: 10.1021/la203492m. Epub 2011 Nov 28.


Delaying cardioversion following 4-week anticoagulation in case of persistent atrial fibrillation after a transcatheter ablation procedure to reduce silent cerebral thromboembolism: a single-center pilot study.

Pianelli M, Scaglione M, Anselmino M, Caponi D, Garcia P, Cesarani F, Toso E, Raimondo C, Halimi F, Leclercq JF, Gaita F.

J Cardiovasc Med (Hagerstown). 2011 Nov;12(11):785-9. doi: 10.2459/JCM.0b013e32834ba0eb.


Dual-wavelength micro-resonator combining photonic crystal membrane and Fabry-Perot cavity.

Kusiaku K, El Daif O, Leclercq JL, Rojo-Romeo P, Seassal C, Viktorovitch P, Benyattou T, Letartre X.

Opt Express. 2011 Aug 1;19(16):15255-64. doi: 10.1364/OE.19.015255.


Variation in GUS activity in vegetatively propagated Hevea brasiliensis transgenic plants.

Lardet L, Leclercq J, Bénistan E, Dessailly F, Oliver G, Martin F, Montoro P.

Plant Cell Rep. 2011 Oct;30(10):1847-56. doi: 10.1007/s00299-011-1092-0. Epub 2011 Jun 4.


Validation, transfer and measurement uncertainty estimation of an HPLC-UV method for the quantification of artemisinin in hydro alcoholic extracts of Artemisia annua L.

Diawara HZ, Gbaguidi F, Evrard B, Leclercq JQ, Moudachirou M, Debrus B, Hubert P, Rozet E.

J Pharm Biomed Anal. 2011 Aug 25;56(1):7-15. doi: 10.1016/j.jpba.2011.04.012. Epub 2011 Apr 21.


Incidence of silent cerebral thromboembolic lesions after atrial fibrillation ablation may change according to technology used: comparison of irrigated radiofrequency, multipolar nonirrigated catheter and cryoballoon.

Gaita F, Leclercq JF, Schumacher B, Scaglione M, Toso E, Halimi F, Schade A, Froehner S, Ziegler V, Sergi D, Cesarani F, Blandino A.

J Cardiovasc Electrophysiol. 2011 Sep;22(9):961-8. doi: 10.1111/j.1540-8167.2011.02050.x. Epub 2011 Mar 31.


Radiofrequency catheter ablation of atrial fibrillation: a cause of silent thromboembolism? Magnetic resonance imaging assessment of cerebral thromboembolism in patients undergoing ablation of atrial fibrillation.

Gaita F, Caponi D, Pianelli M, Scaglione M, Toso E, Cesarani F, Boffano C, Gandini G, Valentini MC, De Ponti R, Halimi F, Leclercq JF.

Circulation. 2010 Oct 26;122(17):1667-73. doi: 10.1161/CIRCULATIONAHA.110.937953. Epub 2010 Oct 11.


Gene expression pattern in response to wounding, methyl jasmonate and ethylene in the bark of Hevea brasiliensis.

Duan C, Rio M, Leclercq J, Bonnot F, Oliver G, Montoro P.

Tree Physiol. 2010 Oct;30(10):1349-59. doi: 10.1093/treephys/tpq066. Epub 2010 Jul 25.


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