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Development of the Automated Primer Design Workflow Uniqprimer and Diagnostic Primers for the Broad-Host-Range Plant Pathogen Dickeya dianthicola.

Karim S, McNally RR, Nasaruddin AS, DeReeper A, Mauleon RP, Charkowski AO, Leach JE, Ben-Hur A, Triplett LR.

Plant Dis. 2019 Aug 20:PDIS10181819RE. doi: 10.1094/PDIS-10-18-1819-RE. [Epub ahead of print]


A global surveillance system for crop diseases.

Carvajal-Yepes M, Cardwell K, Nelson A, Garrett KA, Giovani B, Saunders DGO, Kamoun S, Legg JP, Verdier V, Lessel J, Neher RA, Day R, Pardey P, Gullino ML, Records AR, Bextine B, Leach JE, Staiger S, Tohme J.

Science. 2019 Jun 28;364(6447):1237-1239. doi: 10.1126/science.aaw1572. No abstract available.


A Pathovar of Xanthomonas oryzae Infecting Wild Grasses Provides Insight Into the Evolution of Pathogenicity in Rice Agroecosystems.

Lang JM, Pérez-Quintero AL, Koebnik R, DuCharme E, Sarra S, Doucoure H, Keita I, Ziegle J, Jacobs JM, Oliva R, Koita O, Szurek B, Verdier V, Leach JE.

Front Plant Sci. 2019 Apr 30;10:507. doi: 10.3389/fpls.2019.00507. eCollection 2019.


Rice Galaxy: an open resource for plant science.

Juanillas V, Dereeper A, Beaume N, Droc G, Dizon J, Mendoza JR, Perdon JP, Mansueto L, Triplett L, Lang J, Zhou G, Ratharanjan K, Plale B, Haga J, Leach JE, Ruiz M, Thomson M, Alexandrov N, Larmande P, Kretzschmar T, Mauleon RP.

Gigascience. 2019 May 1;8(5). pii: giz028. doi: 10.1093/gigascience/giz028.


Abiotic and biotic stresses induce a core transcriptome response in rice.

Cohen SP, Leach JE.

Sci Rep. 2019 Apr 18;9(1):6273. doi: 10.1038/s41598-019-42731-8.


Shared cis-regulatory architecture identified across defense response genes is associated with broad-spectrum quantitative resistance in rice.

Tonnessen BW, Bossa-Castro AM, Mauleon R, Alexandrov N, Leach JE.

Sci Rep. 2019 Feb 7;9(1):1536. doi: 10.1038/s41598-018-38195-x.


Comparative Rice Bran Metabolomics across Diverse Cultivars and Functional Rice Gene⁻Bran Metabolite Relationships.

Zarei I, Luna E, Leach JE, McClung A, Vilchez S, Koita O, Ryan EP.

Metabolites. 2018 Oct 9;8(4). pii: E63. doi: 10.3390/metabo8040063.


In Planta Bacterial Transcriptomics Predict Plant Disease Outcomes.

Cohen SP, Jacobs JM, Leach JE.

Trends Plant Sci. 2018 Sep;23(9):751-753. doi: 10.1016/j.tplants.2018.06.008. Epub 2018 Jun 28.


Interactions of free-living amoebae with rice bacterial pathogens Xanthomonas oryzae pathovars oryzae and oryzicola.

Long JJ, Jahn CE, Sánchez-Hidalgo A, Wheat W, Jackson M, Gonzalez-Juarrero M, Leach JE.

PLoS One. 2018 Aug 24;13(8):e0202941. doi: 10.1371/journal.pone.0202941. eCollection 2018.


Functional analysis of African Xanthomonas oryzae pv. oryzae TALomes reveals a new susceptibility gene in bacterial leaf blight of rice.

Tran TT, Pérez-Quintero AL, Wonni I, Carpenter SCD, Yu Y, Wang L, Leach JE, Verdier V, Cunnac S, Bogdanove AJ, Koebnik R, Hutin M, Szurek B.

PLoS Pathog. 2018 Jun 4;14(6):e1007092. doi: 10.1371/journal.ppat.1007092. eCollection 2018 Jun.


Allelic variation for broad-spectrum resistance and susceptibility to bacterial pathogens identified in a rice MAGIC population.

Bossa-Castro AM, Tekete C, Raghavan C, Delorean EE, Dereeper A, Dagno K, Koita O, Mosquera G, Leung H, Verdier V, Leach JE.

Plant Biotechnol J. 2018 Feb 6. doi: 10.1111/pbi.12895. [Epub ahead of print]


RNA-Seq analysis reveals insight into enhanced rice Xa7-mediated bacterial blight resistance at high temperature.

Cohen SP, Liu H, Argueso CT, Pereira A, Vera Cruz C, Verdier V, Leach JE.

PLoS One. 2017 Nov 6;12(11):e0187625. doi: 10.1371/journal.pone.0187625. eCollection 2017.


Detection and Characterization of Xanthomonas vasicola pv. vasculorum (Cobb 1894) comb. nov. Causing Bacterial Leaf Streak of Corn in the United States.

Lang JM, DuCharme E, Ibarra Caballero J, Luna E, Hartman T, Ortiz-Castro M, Korus K, Rascoe J, Jackson-Ziems TA, Broders K, Leach JE.

Phytopathology. 2017 Nov;107(11):1312-1321. doi: 10.1094/PHYTO-05-17-0168-R. Epub 2017 Sep 20.


The effector AvrRxo1 phosphorylates NAD in planta.

Shidore T, Broeckling CD, Kirkwood JS, Long JJ, Miao J, Zhao B, Leach JE, Triplett LR.

PLoS Pathog. 2017 Jun 19;13(6):e1006442. doi: 10.1371/journal.ppat.1006442. eCollection 2017 Jun.


Communication in the Phytobiome.

Leach JE, Triplett LR, Argueso CT, Trivedi P.

Cell. 2017 May 4;169(4):587-596. doi: 10.1016/j.cell.2017.04.025. Review.


Research priorities for harnessing plant microbiomes in sustainable agriculture.

Busby PE, Soman C, Wagner MR, Friesen ML, Kremer J, Bennett A, Morsy M, Eisen JA, Leach JE, Dangl JL.

PLoS Biol. 2017 Mar 28;15(3):e2001793. doi: 10.1371/journal.pbio.2001793. eCollection 2017 Mar.


Field-based high throughput phenotyping rapidly identifies genomic regions controlling yield components in rice.

Tanger P, Klassen S, Mojica JP, Lovell JT, Moyers BT, Baraoidan M, Naredo ME, McNally KL, Poland J, Bush DR, Leung H, Leach JE, McKay JK.

Sci Rep. 2017 Feb 21;7:42839. doi: 10.1038/srep42839.


An operon for production of bioactive gibberellin A4 phytohormone with wide distribution in the bacterial rice leaf streak pathogen Xanthomonas oryzae pv. oryzicola.

Nagel R, Turrini PC, Nett RS, Leach JE, Verdier V, Van Sluys MA, Peters RJ.

New Phytol. 2017 May;214(3):1260-1266. doi: 10.1111/nph.14441. Epub 2017 Jan 30.


Characterization of the Xanthomonas translucens Complex Using Draft Genomes, Comparative Genomics, Phylogenetic Analysis, and Diagnostic LAMP Assays.

Langlois PA, Snelling J, Hamilton JP, Bragard C, Koebnik R, Verdier V, Triplett LR, Blom J, Tisserat NA, Leach JE.

Phytopathology. 2017 May;107(5):519-527. doi: 10.1094/PHYTO-08-16-0286-R. Epub 2017 Mar 28.


AvrRxo1 Is a Bifunctional Type III Secreted Effector and Toxin-Antitoxin System Component with Homologs in Diverse Environmental Contexts.

Triplett LR, Shidore T, Long J, Miao J, Wu S, Han Q, Zhou C, Ishihara H, Li J, Zhao B, Leach JE.

PLoS One. 2016 Jul 8;11(7):e0158856. doi: 10.1371/journal.pone.0158856. eCollection 2016.


A resistance locus in the American heirloom rice variety Carolina Gold Select is triggered by TAL effectors with diverse predicted targets and is effective against African strains of Xanthomonas oryzae pv. oryzicola.

Triplett LR, Cohen SP, Heffelfinger C, Schmidt CL, Huerta AI, Tekete C, Verdier V, Bogdanove AJ, Leach JE.

Plant J. 2016 Sep;87(5):472-83. doi: 10.1111/tpj.13212. Epub 2016 Aug 2.


Single molecule real-time sequencing of Xanthomonas oryzae genomes reveals a dynamic structure and complex TAL (transcription activator-like) effector gene relationships.

Booher NJ, Carpenter SC, Sebra RP, Wang L, Salzberg SL, Leach JE, Bogdanove AJ.

Microb Genom. 2015 Oct;1(4). doi: 10.1099/mgen.0.000032. Epub 2015 Oct 13.


OsGF14e positively regulates panicle blast resistance in rice.

Liu Q, Yang J, Zhang S, Zhao J, Feng A, Yang T, Wang X, Mao X, Dong J, Zhu X, Leung H, Leach JE, Liu B.

Biochem Biophys Res Commun. 2016 Feb 26;471(1):247-52. doi: 10.1016/j.bbrc.2016.02.005. Epub 2016 Feb 3.


OsGF14b Positively Regulates Panicle Blast Resistance but Negatively Regulates Leaf Blast Resistance in Rice.

Liu Q, Yang J, Zhang S, Zhao J, Feng A, Yang T, Wang X, Mao X, Dong J, Zhu X, Leung H, Leach JE, Liu B.

Mol Plant Microbe Interact. 2016 Jan;29(1):46-56. doi: 10.1094/MPMI-03-15-0047-R. Epub 2015 Dec 10.


Crystal Structure of Xanthomonas AvrRxo1-ORF1, a Type III Effector with a Polynucleotide Kinase Domain, and Its Interactor AvrRxo1-ORF2.

Han Q, Zhou C, Wu S, Liu Y, Triplett L, Miao J, Tokuhisa J, Deblais L, Robinson H, Leach JE, Li J, Zhao B.

Structure. 2015 Oct 6;23(10):1900-1909. doi: 10.1016/j.str.2015.06.030. Epub 2015 Sep 3.


Erwinia iniecta sp. nov., isolated from Russian wheat aphid (Diuraphis noxia).

Campillo T, Luna E, Portier P, Fischer-Le Saux M, Lapitan N, Tisserat NA, Leach JE.

Int J Syst Evol Microbiol. 2015 Oct;65(10):3625-33. doi: 10.1099/ijsem.0.000466.


Update on Bacterial Blight of Rice: Fourth International Conference on Bacterial Blight.

Sundaram RM, Chatterjee S, Oliva R, Laha GS, Cruz CV, Leach JE, Sonti RV.

Rice (N Y). 2014 Dec;7(1):12. doi: 10.1186/s12284-014-0012-7. Epub 2014 Jul 26.


Characterization of a novel clade of Xanthomonas isolated from rice leaves in Mali and proposal of Xanthomonas maliensis sp. nov.

Triplett LR, Verdier V, Campillo T, Van Malderghem C, Cleenwerck I, Maes M, Deblais L, Corral R, Koita O, Cottyn B, Leach JE.

Antonie Van Leeuwenhoek. 2015 Apr;107(4):869-81. doi: 10.1007/s10482-015-0379-5. Epub 2015 Jan 15.


Rice phenylalanine ammonia-lyase gene OsPAL4 is associated with broad spectrum disease resistance.

Tonnessen BW, Manosalva P, Lang JM, Baraoidan M, Bordeos A, Mauleon R, Oard J, Hulbert S, Leung H, Leach JE.

Plant Mol Biol. 2015 Feb;87(3):273-86. doi: 10.1007/s11103-014-0275-9. Epub 2014 Dec 17.


Gene amplification of 5-enol-pyruvylshikimate-3-phosphate synthase in glyphosate-resistant Kochia scoparia.

Wiersma AT, Gaines TA, Preston C, Hamilton JP, Giacomini D, Robin Buell C, Leach JE, Westra P.

Planta. 2015 Feb;241(2):463-74. doi: 10.1007/s00425-014-2197-9. Epub 2014 Nov 5.


Human Pathogens on Plants: Designing a Multidisciplinary Strategy for Research.

Fletcher J, Leach JE, Eversole K, Tauxe R.

Phytopathology. 2014 Oct 15:PHYTO09120236RVWtest. [Epub ahead of print]


Human Pathogens on Plants: Designing a Multidisciplinary Strategy for Research.

Fletcher J, Leach JE, Eversole K, Tauxe R.

Phytopathology. 2014 Oct 15:PHYTO09120236IAtest. [Epub ahead of print]


Development of a Genomics-Based LAMP (Loop-Mediated Isothermal Amplification) Assay for Detection of Pseudomonas fuscovaginae from Rice.

Ash GJ, Lang JM, Triplett LR, Stodart BJ, Verdier V, Cruz CV, Rott P, Leach JE.

Plant Dis. 2014 Jul;98(7):909-915. doi: 10.1094/PDIS-09-13-0957-RE.


Virus-induced gene silencing suggests (1,3;1,4)-β-glucanase is a susceptibility factor in the compatible russian wheat aphid-wheat interaction.

Anderson VA, Haley SD, Peairs FB, van Eck L, Leach JE, Lapitan NL.

Mol Plant Microbe Interact. 2014 Sep;27(9):913-22. doi: 10.1094/MPMI-05-13-0141-R.


Novel insights into rice innate immunity against bacterial and fungal pathogens.

Liu W, Liu J, Triplett L, Leach JE, Wang GL.

Annu Rev Phytopathol. 2014;52:213-41. doi: 10.1146/annurev-phyto-102313-045926. Epub 2014 May 30. Review.


Sensitive detection of Xanthomonas oryzae Pathovars oryzae and oryzicola by loop-mediated isothermal amplification.

Lang JM, Langlois P, Nguyen MH, Triplett LR, Purdie L, Holton TA, Djikeng A, Vera Cruz CM, Verdier V, Leach JE.

Appl Environ Microbiol. 2014 Aug;80(15):4519-30.


The transcriptional network of WRKY53 in cereals links oxidative responses to biotic and abiotic stress inputs.

Van Eck L, Davidson RM, Wu S, Zhao BY, Botha AM, Leach JE, Lapitan NL.

Funct Integr Genomics. 2014 Jun;14(2):351-62. doi: 10.1007/s10142-014-0374-3. Epub 2014 Apr 29.


Comparative analysis of two emerging rice seed bacterial pathogens.

Fory PA, Triplett L, Ballen C, Abello JF, Duitama J, Aricapa MG, Prado GA, Correa F, Hamilton J, Leach JE, Tohme J, Mosquera GM.

Phytopathology. 2014 May;104(5):436-44. doi: 10.1094/PHYTO-07-13-0186-R.


Biomass for thermochemical conversion: targets and challenges.

Tanger P, Field JL, Jahn CE, Defoort MW, Leach JE.

Front Plant Sci. 2013 Jul 1;4:218. doi: 10.3389/fpls.2013.00218. eCollection 2013.


Human pathogens on plants: designing a multidisciplinary strategy for research.

Fletcher J, Leach JE, Eversole K, Tauxe R.

Phytopathology. 2013 Apr;103(4):306-15. doi: 10.1094/PHYTO-09-12-0236-IA.


Fine-mapping and molecular marker development for Pi56(t), a NBS-LRR gene conferring broad-spectrum resistance to Magnaporthe oryzae in rice.

Liu Y, Liu B, Zhu X, Yang J, Bordeos A, Wang G, Leach JE, Leung H.

Theor Appl Genet. 2013 Apr;126(4):985-98. doi: 10.1007/s00122-012-2031-3. Epub 2013 Feb 12.


Plant-pathogen interactions: disease resistance in modern agriculture.

Boyd LA, Ridout C, O'Sullivan DM, Leach JE, Leung H.

Trends Genet. 2013 Apr;29(4):233-40. doi: 10.1016/j.tig.2012.10.011. Epub 2012 Nov 12. Review.


Transcription activator-like (TAL) effectors targeting OsSWEET genes enhance virulence on diverse rice (Oryza sativa) varieties when expressed individually in a TAL effector-deficient strain of Xanthomonas oryzae.

Verdier V, Triplett LR, Hummel AW, Corral R, Cernadas RA, Schmidt CL, Bogdanove AJ, Leach JE.

New Phytol. 2012 Dec;196(4):1197-207. doi: 10.1111/j.1469-8137.2012.04367.x. Epub 2012 Oct 18.


Development of a variable number of tandem repeats typing scheme for the bacterial rice pathogen Xanthomonas oryzae pv. oryzicola.

Zhao S, Poulin L, Rodriguez-R LM, Serna NF, Liu SY, Wonni I, Szurek B, Verdier V, Leach JE, He YQ, Feng JX, Koebnik R.

Phytopathology. 2012 Oct;102(10):948-56. doi: 10.1094/PHYTO-04-12-0078-R.


Dietary rice bran promotes resistance to Salmonella enterica serovar Typhimurium colonization in mice.

Kumar A, Henderson A, Forster GM, Goodyear AW, Weir TL, Leach JE, Dow SW, Ryan EP.

BMC Microbiol. 2012 Jul 4;12:71. doi: 10.1186/1471-2180-12-71.


Interspecific hybridization transfers a previously unknown glyphosate resistance mechanism in Amaranthus species.

Gaines TA, Ward SM, Bukun B, Preston C, Leach JE, Westra P.

Evol Appl. 2012 Jan;5(1):29-38. doi: 10.1111/j.1752-4571.2011.00204.x. Epub 2011 Aug 23.


The Comprehensive Phytopathogen Genomics Resource: a web-based resource for data-mining plant pathogen genomes.

Hamilton JP, Neeno-Eckwall EC, Adhikari BN, Perna NT, Tisserat N, Leach JE, Lévesque CA, Buell CR.

Database (Oxford). 2011 Nov 26;2011:bar053. doi: 10.1093/database/bar053. Print 2011.


Controlling rice bacterial blight in Africa: needs and prospects.

Verdier V, Vera Cruz C, Leach JE.

J Biotechnol. 2012 Jun 30;159(4):320-8. doi: 10.1016/j.jbiotec.2011.09.020. Epub 2011 Sep 22.


Linkage illuminates a complex genome.

McKay JK, Leach JE.

Nat Biotechnol. 2011 Aug 5;29(8):717-8. doi: 10.1038/nbt.1945. No abstract available.


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