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Items: 49

1.

Speciation across mountains: Phylogenomics, species delimitation and taxonomy of the Liolaemus leopardinus clade (Squamata, Liolaemidae).

Esquerré D, Ramírez-Álvarez D, Pavón-Vázquez CJ, Troncoso-Palacios J, Garín CF, Keogh JS, Leaché AD.

Mol Phylogenet Evol. 2019 Oct;139:106524. doi: 10.1016/j.ympev.2019.106524. Epub 2019 Jun 3.

PMID:
31170522
2.

Sexual Dichromatism Drives Diversification within a Major Radiation of African Amphibians.

Portik DM, Bell RC, Blackburn DC, Bauer AM, Barratt CD, Branch WR, Burger M, Channing A, Colston TJ, Conradie W, Dehling JM, Drewes RC, Ernst R, Greenbaum E, Gvoždík V, Harvey J, Hillers A, Hirschfeld M, Jongsma GFM, Kielgast J, Kouete MT, Lawson LP, Leaché AD, Loader SP, Lötters S, Meijden AV, Menegon M, Müller S, Nagy ZT, Ofori-Boateng C, Ohler A, Papenfuss TJ, Rößler D, Sinsch U, Rödel MO, Veith M, Vindum J, Zassi-Boulou AG, McGuire JA.

Syst Biol. 2019 Apr 23. pii: syz023. doi: 10.1093/sysbio/syz023. [Epub ahead of print]

PMID:
31140573
3.

Coalescent-based species delimitation in the sand lizards of the Liolaemus wiegmannii complex (Squamata: Liolaemidae).

Villamil J, Avila LJ, Morando M, Sites JW Jr, Leaché AD, Maneyro R, Camargo A.

Mol Phylogenet Evol. 2019 Sep;138:89-101. doi: 10.1016/j.ympev.2019.05.024. Epub 2019 May 22.

PMID:
31128241
4.

The Spectre of Too Many Species.

Leaché AD, Zhu T, Rannala B, Yang Z.

Syst Biol. 2019 Jan 1;68(1):168-181. doi: 10.1093/sysbio/syy051.

5.

A genomic evaluation of taxonomic trends through time in coast horned lizards (genus Phrynosoma).

Leaché AD, McElroy MT, Trinh A.

Mol Ecol. 2018 Jul;27(13):2884-2895. doi: 10.1111/mec.14715. Epub 2018 May 28.

PMID:
29742301
6.

A new species of Puddle Frog, genus Phrynobatrachus (Amphibia: Anura: Phrynobatrachidae) from Ghana.

Ofori-Boateng C, LeachÉ AD, Obeng-Kankam B, KouamÉ NG, Hillers A, RÖdel MO.

Zootaxa. 2018 Jan 21;4374(4):565-578. doi: 10.11646/zootaxa.4374.4.6.

PMID:
29689792
7.

Resolving complex phylogeographic patterns in the Balkan Peninsula using closely related wall-lizard species as a model system.

Psonis N, Antoniou A, Karameta E, Leaché AD, Kotsakiozi P, Darriba D, Kozlov A, Stamatakis A, Poursanidis D, Kukushkin O, Jablonski D, Crnobrnja-Isailović J, Gherghel I, Lymberakis P, Poulakakis N.

Mol Phylogenet Evol. 2018 Aug;125:100-115. doi: 10.1016/j.ympev.2018.03.021. Epub 2018 Mar 21.

PMID:
29574273
8.

Phylogenomic evidence for a recent and rapid radiation of lizards in the Patagonian Liolaemus fitzingerii species group.

Grummer JA, Morando MM, Avila LJ, Sites JW Jr, Leaché AD.

Mol Phylogenet Evol. 2018 Aug;125:243-254. doi: 10.1016/j.ympev.2018.03.023. Epub 2018 Mar 16.

PMID:
29555296
9.

Diversity and biogeography of frogs in the genus Amnirana (Anura: Ranidae) across sub-Saharan Africa.

Jongsma GFM, Barej MF, Barratt CD, Burger M, Conradie W, Ernst R, Greenbaum E, Hirschfeld M, Leaché AD, Penner J, Portik DM, Zassi-Boulou AG, Rödel MO, Blackburn DC.

Mol Phylogenet Evol. 2018 Mar;120:274-285. doi: 10.1016/j.ympev.2017.12.006. Epub 2017 Dec 12.

PMID:
29246817
10.

Discordance between genomic divergence and phenotypic variation in a rapidly evolving avian genus (Motacilla).

Harris RB, Alström P, Ödeen A, Leaché AD.

Mol Phylogenet Evol. 2018 Mar;120:183-195. doi: 10.1016/j.ympev.2017.11.020. Epub 2017 Dec 12.

PMID:
29246816
11.

Phylogenomic analysis of the Chilean clade of Liolaemus lizards (Squamata: Liolaemidae) based on sequence capture data.

Panzera A, Leaché AD, D'Elía G, Victoriano PF.

PeerJ. 2017 Oct 26;5:e3941. doi: 10.7717/peerj.3941. eCollection 2017.

12.

Evaluating mechanisms of diversification in a Guineo-Congolian tropical forest frog using demographic model selection.

Portik DM, Leaché AD, Rivera D, Barej MF, Burger M, Hirschfeld M, Rödel MO, Blackburn DC, Fujita MK.

Mol Ecol. 2017 Oct;26(19):5245-5263. doi: 10.1111/mec.14266. Epub 2017 Aug 24.

PMID:
28748565
13.

Persistence of historical population structure in an endangered species despite near-complete biome conversion in California's San Joaquin Desert.

Richmond JQ, Wood DA, Westphal MF, Vandergast AG, Leaché AD, Saslaw LR, Butterfield HS, Fisher RN.

Mol Ecol. 2017 Jul;26(14):3618-3635. doi: 10.1111/mec.14125. Epub 2017 May 2.

PMID:
28370723
14.

Evidence for concerted movement of nuclear and mitochondrial clines in a lizard hybrid zone.

Leaché AD, Grummer JA, Harris RB, Breckheimer IK.

Mol Ecol. 2017 Apr;26(8):2306-2316. doi: 10.1111/mec.14033. Epub 2017 Feb 18.

PMID:
28133829
15.

Corrigendum to "Phylogenomics and species delimitation in the knob-scaled lizards of the genus Xenosaurus (Squamata: Xenosauridae) using ddRADseq data reveal a substantial underestimation of diversity" [Mol. Phylogen. Evol. 106 (2017) 241-253].

Nieto-Montes de Oca A, Barley AJ, Meza-Lázaro RN, García-Vázquez UO, Zamora-Abrego JG, Thomson RC, Leaché AD.

Mol Phylogenet Evol. 2017 Feb;107:644. doi: 10.1016/j.ympev.2016.11.002. Epub 2016 Nov 2. No abstract available.

PMID:
27816561
16.

Phylogenomics and species delimitation in the knob-scaled lizards of the genus Xenosaurus (Squamata: Xenosauridae) using ddRADseq data reveal a substantial underestimation of diversity.

Nieto-Montes de Oca A, Barley AJ, Meza-Lázaro RN, García-Vázquez UO, Zamora-Abrego JG, Thomson RC, Leaché AD.

Mol Phylogenet Evol. 2017 Jan;106:241-253. doi: 10.1016/j.ympev.2016.09.001. Epub 2016 Oct 5. Erratum in: Mol Phylogenet Evol. 2017 Feb;107:644.

PMID:
27720785
17.

Phylogenomics of a rapid radiation: is chromosomal evolution linked to increased diversification in north american spiny lizards (Genus Sceloporus)?

Leaché AD, Banbury BL, Linkem CW, de Oca AN.

BMC Evol Biol. 2016 Mar 22;16:63. doi: 10.1186/s12862-016-0628-x.

18.

Population structure and phylogeography of the Gentoo Penguin (Pygoscelis papua) across the Scotia Arc.

Levy H, Clucas GV, Rogers AD, Leaché AD, Ciborowski KL, Polito MJ, Lynch HJ, Dunn MJ, Hart T.

Ecol Evol. 2016 Feb 20;6(6):1834-53. doi: 10.1002/ece3.1929. eCollection 2016 Mar.

19.

Influence of geology and human activity on the genetic structure and demography of the Oriental fire-bellied toad (Bombina orientalis).

Fong JJ, Li PP, Yang BT, Zhou ZY, Leaché AD, Min MS, Waldman B.

Mol Phylogenet Evol. 2016 Apr;97:69-75. doi: 10.1016/j.ympev.2015.12.019. Epub 2015 Dec 31.

PMID:
26748269
20.

Detecting the Anomaly Zone in Species Trees and Evidence for a Misleading Signal in Higher-Level Skink Phylogeny (Squamata: Scincidae).

Linkem CW, Minin VN, Leaché AD.

Syst Biol. 2016 May;65(3):465-77. doi: 10.1093/sysbio/syw001. Epub 2016 Jan 6.

21.

Implementing and testing the multispecies coalescent model: A valuable paradigm for phylogenomics.

Edwards SV, Xi Z, Janke A, Faircloth BC, McCormack JE, Glenn TC, Zhong B, Wu S, Lemmon EM, Lemmon AR, Leaché AD, Liu L, Davis CC.

Mol Phylogenet Evol. 2016 Jan;94(Pt A):447-62. doi: 10.1016/j.ympev.2015.10.027. Epub 2015 Oct 27. Review.

22.

Short Tree, Long Tree, Right Tree, Wrong Tree: New Acquisition Bias Corrections for Inferring SNP Phylogenies.

Leaché AD, Banbury BL, Felsenstein J, de Oca AN, Stamatakis A.

Syst Biol. 2015 Nov;64(6):1032-47. doi: 10.1093/sysbio/syv053. Epub 2015 Jul 29.

23.

Estimating the temporal and spatial extent of gene flow among sympatric lizard populations (genus Sceloporus) in the southern Mexican highlands.

Grummer JA, Calderón-Espinosa ML, Nieto-Montes de Oca A, Smith EN, Méndez-de la Cruz FR, Leaché AD.

Mol Ecol. 2015 Apr;24(7):1523-42. doi: 10.1111/mec.13122.

PMID:
25712551
24.

Phylogenomics of phrynosomatid lizards: conflicting signals from sequence capture versus restriction site associated DNA sequencing.

Leaché AD, Chavez AS, Jones LN, Grummer JA, Gottscho AD, Linkem CW.

Genome Biol Evol. 2015 Feb 7;7(3):706-19. doi: 10.1093/gbe/evv026.

25.

Genomic resources notes accepted 1 August 2014-30 September 2014.

Genomic Resources Development Consortium, Arthofer W, Banbury BL, Carneiro M, Cicconardi F, Duda TF, Harris RB, Kang DS, Leaché AD, Nolte V, Nourisson C, Palmieri N, Schlick-Steiner BC, Schlötterer C, Sequeira F, Sim C, Steiner FM, Vallinoto M, Weese DA.

Mol Ecol Resour. 2015 Jan;15(1):228-9. doi: 10.1111/1755-0998.12340. Epub 2014 Nov 25.

26.

A hybrid phylogenetic-phylogenomic approach for species tree estimation in African Agama lizards with applications to biogeography, character evolution, and diversification.

Leaché AD, Wagner P, Linkem CW, Böhme W, Papenfuss TJ, Chong RA, Lavin BR, Bauer AM, Nielsen SV, Greenbaum E, Rödel MO, Schmitz A, LeBreton M, Ineich I, Chirio L, Ofori-Boateng C, Eniang EA, Baha El Din S, Lemmon AR, Burbrink FT.

Mol Phylogenet Evol. 2014 Oct;79:215-30. doi: 10.1016/j.ympev.2014.06.013. Epub 2014 Jun 25.

PMID:
24973715
27.

Species delimitation using genome-wide SNP data.

Leaché AD, Fujita MK, Minin VN, Bouckaert RR.

Syst Biol. 2014 Jul;63(4):534-42. doi: 10.1093/sysbio/syu018. Epub 2014 Mar 12.

28.

Comparative species divergence across eight triplets of spiny lizards (Sceloporus) using genomic sequence data.

Leaché AD, Harris RB, Maliska ME, Linkem CW.

Genome Biol Evol. 2013;5(12):2410-9. doi: 10.1093/gbe/evt186.

29.

The influence of gene flow on species tree estimation: a simulation study.

Leaché AD, Harris RB, Rannala B, Yang Z.

Syst Biol. 2014 Jan 1;63(1):17-30. doi: 10.1093/sysbio/syt049. Epub 2013 Aug 13.

PMID:
23945075
30.

West Africa - a safe haven for frogs? A sub-continental assessment of the chytrid fungus (Batrachochytrium dendrobatidis).

Penner J, Adum GB, McElroy MT, Doherty-Bone T, Hirschfeld M, Sandberger L, Weldon C, Cunningham AA, Ohst T, Wombwell E, Portik DM, Reid D, Hillers A, Ofori-Boateng C, Oduro W, Plötner J, Ohler A, Leaché AD, Rödel MO.

PLoS One. 2013;8(2):e56236. doi: 10.1371/journal.pone.0056236. Epub 2013 Feb 13.

31.

Coalescent-based species delimitation in an integrative taxonomy.

Fujita MK, Leaché AD, Burbrink FT, McGuire JA, Moritz C.

Trends Ecol Evol. 2012 Sep;27(9):480-8. doi: 10.1016/j.tree.2012.04.012. Epub 2012 May 25.

PMID:
22633974
32.

Multi-locus estimates of population structure and migration in a fence lizard hybrid zone.

Leaché AD.

PLoS One. 2011;6(9):e25827. doi: 10.1371/journal.pone.0025827. Epub 2011 Sep 29.

33.

Late Cretaceous origin of the rice tribe provides evidence for early diversification in Poaceae.

Prasad V, Strömberg CA, Leaché AD, Samant B, Patnaik R, Tang L, Mohabey DM, Ge S, Sahni A.

Nat Commun. 2011 Sep 20;2:480. doi: 10.1038/ncomms1482.

PMID:
21934664
34.

The accuracy of species tree estimation under simulation: a comparison of methods.

Leaché AD, Rannala B.

Syst Biol. 2011 Mar;60(2):126-37. doi: 10.1093/sysbio/syq073. Epub 2010 Nov 18.

PMID:
21088009
35.

Species tree discordance traces to phylogeographic clade boundaries in North American fence lizards (Sceloporus).

Leaché AD.

Syst Biol. 2009 Dec;58(6):547-59. doi: 10.1093/sysbio/syp057. Epub 2009 Sep 21.

PMID:
20525608
36.

Bayesian species delimitation in West African forest geckos (Hemidactylus fasciatus).

Leaché AD, Fujita MK.

Proc Biol Sci. 2010 Oct 22;277(1697):3071-7. doi: 10.1098/rspb.2010.0662. Epub 2010 Jun 2.

37.

Chromosome evolution and diversification in North American spiny lizards (genus Sceloporus).

Leaché AD, Sites JW Jr.

Cytogenet Genome Res. 2009;127(2-4):166-81. doi: 10.1159/000293285. Epub 2010 Mar 4.

PMID:
20203475
38.

Species trees for spiny lizards (genus Sceloporus): identifying points of concordance and conflict between nuclear and mitochondrial data.

Leaché AD.

Mol Phylogenet Evol. 2010 Jan;54(1):162-71. doi: 10.1016/j.ympev.2009.09.006. Epub 2009 Sep 12.

PMID:
19751840
39.

Quantifying ecological, morphological, and genetic variation to delimit species in the coast horned lizard species complex (Phrynosoma).

Leaché AD, Koo MS, Spencer CL, Papenfuss TJ, Fisher RN, McGuire JA.

Proc Natl Acad Sci U S A. 2009 Jul 28;106(30):12418-23. doi: 10.1073/pnas.0906380106. Epub 2009 Jul 22.

40.

Homoplasy and clade support.

Brandley MC, Warren DL, Leaché AD, McGuire JA.

Syst Biol. 2009 Apr;58(2):184-98. doi: 10.1093/sysbio/syp019. Epub 2009 Jun 29.

PMID:
20525577
41.
42.
44.

Direct and indirect effects of environmental temperature on the evolution of reproductive strategies: an information-theoretic approach.

Angilletta MJ Jr, Oufiero CE, Leaché AD.

Am Nat. 2006 Oct;168(4):E123-35. Epub 2006 Aug 29.

PMID:
17004215
45.

Are unequal clade priors problematic for Bayesian phylogenetics?

Brandley MC, Leaché AD, Warren DL, McGuire JA.

Syst Biol. 2006 Feb;55(1):138-46; author reply 147-51. No abstract available.

PMID:
16507530
46.
47.

Bergmann's Clines in Ectotherms: Illustrating a Life-History Perspective with Sceloporine Lizards.

Angilletta MJ Jr, Niewiarowski PH, Dunham AE, Leaché AD, Porter WP.

Am Nat. 2004 Dec;164(6):E168-E183. doi: 10.1086/425222.

PMID:
29641924
48.

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