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Items: 31

1.

A high-quality genome sequence of Rosa chinensis to elucidate ornamental traits.

Hibrand Saint-Oyant L, Ruttink T, Hamama L, Kirov I, Lakhwani D, Zhou NN, Bourke PM, Daccord N, Leus L, Schulz D, Van de Geest H, Hesselink T, Van Laere K, Debray K, Balzergue S, Thouroude T, Chastellier A, Jeauffre J, Voisine L, Gaillard S, Borm TJA, Arens P, Voorrips RE, Maliepaard C, Neu E, Linde M, Le Paslier MC, Bérard A, Bounon R, Clotault J, Choisne N, Quesneville H, Kawamura K, Aubourg S, Sakr S, Smulders MJM, Schijlen E, Bucher E, Debener T, De Riek J, Foucher F.

Nat Plants. 2018 Jul;4(7):473-484. doi: 10.1038/s41477-018-0166-1. Epub 2018 Jun 11.

PMID:
29892093
2.

FANCM Limits Meiotic Crossovers in Brassica Crops.

Blary A, Gonzalo A, Eber F, Bérard A, Bergès H, Bessoltane N, Charif D, Charpentier C, Cromer L, Fourment J, Genevriez C, Le Paslier MC, Lodé M, Lucas MO, Nesi N, Lloyd A, Chèvre AM, Jenczewski E.

Front Plant Sci. 2018 Mar 23;9:368. doi: 10.3389/fpls.2018.00368. eCollection 2018.

3.

Extended diversity analysis of cultivated grapevine Vitis vinifera with 10K genome-wide SNPs.

Laucou V, Launay A, Bacilieri R, Lacombe T, Adam-Blondon AF, Bérard A, Chauveau A, de Andrés MT, Hausmann L, Ibáñez J, Le Paslier MC, Maghradze D, Martinez-Zapater JM, Maul E, Ponnaiah M, Töpfer R, Péros JP, Boursiquot JM.

PLoS One. 2018 Feb 8;13(2):e0192540. doi: 10.1371/journal.pone.0192540. eCollection 2018.

4.

Sequence analysis of European maize inbred line F2 provides new insights into molecular and chromosomal characteristics of presence/absence variants.

Darracq A, Vitte C, Nicolas S, Duarte J, Pichon JP, Mary-Huard T, Chevalier C, Bérard A, Le Paslier MC, Rogowsky P, Charcosset A, Joets J.

BMC Genomics. 2018 Feb 5;19(1):119. doi: 10.1186/s12864-018-4490-7.

5.

High throughput SNP discovery and genotyping in hexaploid wheat.

Rimbert H, Darrier B, Navarro J, Kitt J, Choulet F, Leveugle M, Duarte J, Rivière N, Eversole K; International Wheat Genome Sequencing Consortium, Le Gouis J; on behalf The BreedWheat Consortium, Davassi A, Balfourier F, Le Paslier MC, Berard A, Brunel D, Feuillet C, Poncet C, Sourdille P, Paux E.

PLoS One. 2018 Jan 2;13(1):e0186329. doi: 10.1371/journal.pone.0186329. eCollection 2018.

6.

A new version of the grapevine reference genome assembly (12X.v2) and of its annotation (VCost.v3).

Canaguier A, Grimplet J, Di Gaspero G, Scalabrin S, Duchêne E, Choisne N, Mohellibi N, Guichard C, Rombauts S, Le Clainche I, Bérard A, Chauveau A, Bounon R, Rustenholz C, Morgante M, Le Paslier MC, Brunel D, Adam-Blondon AF.

Genom Data. 2017 Sep 18;14:56-62. doi: 10.1016/j.gdata.2017.09.002. eCollection 2017 Dec. No abstract available.

7.

Patterns of Genetic Structure and Linkage Disequilibrium in a Large Collection of Pea Germplasm.

Siol M, Jacquin F, Chabert-Martinello M, Smýkal P, Le Paslier MC, Aubert G, Burstin J.

G3 (Bethesda). 2017 Aug 7;7(8):2461-2471. doi: 10.1534/g3.117.043471.

8.

The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution.

Badouin H, Gouzy J, Grassa CJ, Murat F, Staton SE, Cottret L, Lelandais-Brière C, Owens GL, Carrère S, Mayjonade B, Legrand L, Gill N, Kane NC, Bowers JE, Hubner S, Bellec A, Bérard A, Bergès H, Blanchet N, Boniface MC, Brunel D, Catrice O, Chaidir N, Claudel C, Donnadieu C, Faraut T, Fievet G, Helmstetter N, King M, Knapp SJ, Lai Z, Le Paslier MC, Lippi Y, Lorenzon L, Mandel JR, Marage G, Marchand G, Marquand E, Bret-Mestries E, Morien E, Nambeesan S, Nguyen T, Pegot-Espagnet P, Pouilly N, Raftis F, Sallet E, Schiex T, Thomas J, Vandecasteele C, Varès D, Vear F, Vautrin S, Crespi M, Mangin B, Burke JM, Salse J, Muños S, Vincourt P, Rieseberg LH, Langlade NB.

Nature. 2017 Jun 1;546(7656):148-152. doi: 10.1038/nature22380. Epub 2017 May 22.

PMID:
28538728
9.

Rapid identification of causal mutations in tomato EMS populations via mapping-by-sequencing.

Garcia V, Bres C, Just D, Fernandez L, Tai FW, Mauxion JP, Le Paslier MC, Bérard A, Brunel D, Aoki K, Alseekh S, Fernie AR, Fraser PD, Rothan C.

Nat Protoc. 2016 Dec;11(12):2401-2418. doi: 10.1038/nprot.2016.143. Epub 2016 Nov 3.

PMID:
27809315
10.

Characterization of the Poplar Pan-Genome by Genome-Wide Identification of Structural Variation.

Pinosio S, Giacomello S, Faivre-Rampant P, Taylor G, Jorge V, Le Paslier MC, Zaina G, Bastien C, Cattonaro F, Marroni F, Morgante M.

Mol Biol Evol. 2016 Oct;33(10):2706-19. doi: 10.1093/molbev/msw161. Epub 2016 Aug 7.

11.

Genetic diversity, linkage disequilibrium and power of a large grapevine (Vitis vinifera L) diversity panel newly designed for association studies.

Nicolas SD, Péros JP, Lacombe T, Launay A, Le Paslier MC, Bérard A, Mangin B, Valière S, Martins F, Le Cunff L, Laucou V, Bacilieri R, Dereeper A, Chatelet P, This P, Doligez A.

BMC Plant Biol. 2016 Mar 22;16:74. doi: 10.1186/s12870-016-0754-z.

12.

New resources for genetic studies in Populus nigra: genome-wide SNP discovery and development of a 12k Infinium array.

Faivre-Rampant P, Zaina G, Jorge V, Giacomello S, Segura V, Scalabrin S, Guérin V, De Paoli E, Aluome C, Viger M, Cattonaro F, Payne A, PaulStephenRaj P, Le Paslier MC, Berard A, Allwright MR, Villar M, Taylor G, Bastien C, Morgante M.

Mol Ecol Resour. 2016 Jul;16(4):1023-36. doi: 10.1111/1755-0998.12513. Epub 2016 Mar 24.

PMID:
26929265
13.
14.

Genome Sequences of Populus tremula Chloroplast and Mitochondrion: Implications for Holistic Poplar Breeding.

Kersten B, Faivre Rampant P, Mader M, Le Paslier MC, Bounon R, Berard A, Vettori C, Schroeder H, Leplé JC, Fladung M.

PLoS One. 2016 Jan 22;11(1):e0147209. doi: 10.1371/journal.pone.0147209. eCollection 2016.

15.

Genomic Prediction in Pea: Effect of Marker Density and Training Population Size and Composition on Prediction Accuracy.

Tayeh N, Klein A, Le Paslier MC, Jacquin F, Houtin H, Rond C, Chabert-Martinello M, Magnin-Robert JB, Marget P, Aubert G, Burstin J.

Front Plant Sci. 2015 Nov 17;6:941. doi: 10.3389/fpls.2015.00941. eCollection 2015.

16.

Development of two major resources for pea genomics: the GenoPea 13.2K SNP Array and a high-density, high-resolution consensus genetic map.

Tayeh N, Aluome C, Falque M, Jacquin F, Klein A, Chauveau A, Bérard A, Houtin H, Rond C, Kreplak J, Boucherot K, Martin C, Baranger A, Pilet-Nayel ML, Warkentin TD, Brunel D, Marget P, Le Paslier MC, Aubert G, Burstin J.

Plant J. 2015 Dec;84(6):1257-73. doi: 10.1111/tpj.13070.

17.

Dissecting quantitative trait variation in the resequencing era: complementarity of bi-parental, multi-parental and association panels.

Pascual L, Albert E, Sauvage C, Duangjit J, Bouchet JP, Bitton F, Desplat N, Brunel D, Le Paslier MC, Ranc N, Bruguier L, Chauchard B, Verschave P, Causse M.

Plant Sci. 2016 Jan;242:120-130. doi: 10.1016/j.plantsci.2015.06.017. Epub 2015 Jun 23.

18.

Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.

Chalhoub B, Denoeud F, Liu S, Parkin IA, Tang H, Wang X, Chiquet J, Belcram H, Tong C, Samans B, Corréa M, Da Silva C, Just J, Falentin C, Koh CS, Le Clainche I, Bernard M, Bento P, Noel B, Labadie K, Alberti A, Charles M, Arnaud D, Guo H, Daviaud C, Alamery S, Jabbari K, Zhao M, Edger PP, Chelaifa H, Tack D, Lassalle G, Mestiri I, Schnel N, Le Paslier MC, Fan G, Renault V, Bayer PE, Golicz AA, Manoli S, Lee TH, Thi VH, Chalabi S, Hu Q, Fan C, Tollenaere R, Lu Y, Battail C, Shen J, Sidebottom CH, Wang X, Canaguier A, Chauveau A, Bérard A, Deniot G, Guan M, Liu Z, Sun F, Lim YP, Lyons E, Town CD, Bancroft I, Wang X, Meng J, Ma J, Pires JC, King GJ, Brunel D, Delourme R, Renard M, Aury JM, Adams KL, Batley J, Snowdon RJ, Tost J, Edwards D, Zhou Y, Hua W, Sharpe AG, Paterson AH, Guan C, Wincker P.

Science. 2014 Aug 22;345(6199):950-3. doi: 10.1126/science.1253435. Epub 2014 Aug 21.

19.

Genome-wide analysis of intraspecific DNA polymorphism in 'Micro-Tom', a model cultivar of tomato (Solanum lycopersicum).

Kobayashi M, Nagasaki H, Garcia V, Just D, Bres C, Mauxion JP, Le Paslier MC, Brunel D, Suda K, Minakuchi Y, Toyoda A, Fujiyama A, Toyoshima H, Suzuki T, Igarashi K, Rothan C, Kaminuma E, Nakamura Y, Yano K, Aoki K.

Plant Cell Physiol. 2014 Feb;55(2):445-54. doi: 10.1093/pcp/pct181. Epub 2013 Dec 5.

PMID:
24319074
20.

Whole genome resequencing in tomato reveals variation associated with introgression and breeding events.

Causse M, Desplat N, Pascual L, Le Paslier MC, Sauvage C, Bauchet G, Bérard A, Bounon R, Tchoumakov M, Brunel D, Bouchet JP.

BMC Genomics. 2013 Nov 14;14:791. doi: 10.1186/1471-2164-14-791.

21.

Phenotypic diversity and association mapping for fruit quality traits in cultivated tomato and related species.

Xu J, Ranc N, Muños S, Rolland S, Bouchet JP, Desplat N, Le Paslier MC, Liang Y, Brunel D, Causse M.

Theor Appl Genet. 2013 Mar;126(3):567-81. doi: 10.1007/s00122-012-2002-8. Epub 2012 Nov 4.

PMID:
23124430
22.

Genome-wide association mapping in tomato (Solanum lycopersicum) is possible using genome admixture of Solanum lycopersicum var. cerasiforme.

Ranc N, Muños S, Xu J, Le Paslier MC, Chauveau A, Bounon R, Rolland S, Bouchet JP, Brunel D, Causse M.

G3 (Bethesda). 2012 Aug;2(8):853-64. doi: 10.1534/g3.112.002667. Epub 2012 Aug 1.

23.

A large maize (Zea mays L.) SNP genotyping array: development and germplasm genotyping, and genetic mapping to compare with the B73 reference genome.

Ganal MW, Durstewitz G, Polley A, Bérard A, Buckler ES, Charcosset A, Clarke JD, Graner EM, Hansen M, Joets J, Le Paslier MC, McMullen MD, Montalent P, Rose M, Schön CC, Sun Q, Walter H, Martin OC, Falque M.

PLoS One. 2011;6(12):e28334. doi: 10.1371/journal.pone.0028334. Epub 2011 Dec 8.

24.

Transcriptomic analysis of the interaction between Helianthus annuus and its obligate parasite Plasmopara halstedii shows single nucleotide polymorphisms in CRN sequences.

As-sadi F, Carrere S, Gascuel Q, Hourlier T, Rengel D, Le Paslier MC, Bordat A, Boniface MC, Brunel D, Gouzy J, Godiard L, Vincourt P.

BMC Genomics. 2011 Oct 11;12:498. doi: 10.1186/1471-2164-12-498.

25.

Increase in tomato locule number is controlled by two single-nucleotide polymorphisms located near WUSCHEL.

Muños S, Ranc N, Botton E, Bérard A, Rolland S, Duffé P, Carretero Y, Le Paslier MC, Delalande C, Bouzayen M, Brunel D, Causse M.

Plant Physiol. 2011 Aug;156(4):2244-54. doi: 10.1104/pp.111.173997. Epub 2011 Jun 14.

26.

Patterns of sequence polymorphism in the fleshless berry locus in cultivated and wild Vitis vinifera accessions.

Houel C, Bounon R, Chaïb J, Guichard C, Péros JP, Bacilieri R, Dereeper A, Canaguier A, Lacombe T, N'Diaye A, Le Paslier MC, Vernerey MS, Coriton O, Brunel D, This P, Torregrosa L, Adam-Blondon AF.

BMC Plant Biol. 2010 Dec 22;10:284. doi: 10.1186/1471-2229-10-284.

27.

Megabase level sequencing reveals contrasted organization and evolution patterns of the wheat gene and transposable element spaces.

Choulet F, Wicker T, Rustenholz C, Paux E, Salse J, Leroy P, Schlub S, Le Paslier MC, Magdelenat G, Gonthier C, Couloux A, Budak H, Breen J, Pumphrey M, Liu S, Kong X, Jia J, Gut M, Brunel D, Anderson JA, Gill BS, Appels R, Keller B, Feuillet C.

Plant Cell. 2010 Jun;22(6):1686-701. doi: 10.1105/tpc.110.074187. Epub 2010 Jun 25.

28.

Structure, allelic diversity and selection of Asr genes, candidate for drought tolerance, in Oryza sativa L. and wild relatives.

Philippe R, Courtois B, McNally KL, Mournet P, El-Malki R, Le Paslier MC, Fabre D, Billot C, Brunel D, Glaszmann JC, This D.

Theor Appl Genet. 2010 Aug;121(4):769-87. doi: 10.1007/s00122-010-1348-z. Epub 2010 May 8.

PMID:
20454772
29.

Insertion site-based polymorphism markers open new perspectives for genome saturation and marker-assisted selection in wheat.

Paux E, Faure S, Choulet F, Roger D, Gauthier V, Martinant JP, Sourdille P, Balfourier F, Le Paslier MC, Chauveau A, Cakir M, Gandon B, Feuillet C.

Plant Biotechnol J. 2010 Feb;8(2):196-210. doi: 10.1111/j.1467-7652.2009.00477.x.

30.

High-throughput single nucleotide polymorphism genotyping in wheat (Triticum spp.).

Bérard A, Le Paslier MC, Dardevet M, Exbrayat-Vinson F, Bonnin I, Cenci A, Haudry A, Brunel D, Ravel C.

Plant Biotechnol J. 2009 May;7(4):364-74. doi: 10.1111/j.1467-7652.2009.00404.x.

31.

Construction and characterization of a Schistosoma mansoni bacterial artificial chromosome library.

Le Paslier MC, Pierce RJ, Merlin F, Hirai H, Wu W, Williams DL, Johnston D, LoVerde PT, Le Paslier D.

Genomics. 2000 Apr 15;65(2):87-94.

PMID:
10783255

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