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Items: 1 to 50 of 110

1.

Distinct Carbon Isotope Fractionation Signatures during Biotic and Abiotic Reductive Transformation of Chlordecone.

Chevallier ML, Cooper M, Kümmel S, Barbance A, Le Paslier D, Richnow HH, Saaidi PL, Adrian L.

Environ Sci Technol. 2018 Mar 20;52(6):3615-3624. doi: 10.1021/acs.est.7b05394. Epub 2018 Mar 6.

PMID:
29473745
2.

Microbial Degradation of a Recalcitrant Pesticide: Chlordecone.

Chaussonnerie S, Saaidi PL, Ugarte E, Barbance A, Fossey A, Barbe V, Gyapay G, Brüls T, Chevallier M, Couturat L, Fouteau S, Muselet D, Pateau E, Cohen GN, Fonknechten N, Weissenbach J, Le Paslier D.

Front Microbiol. 2016 Dec 20;7:2025. doi: 10.3389/fmicb.2016.02025. eCollection 2016.

3.

Back to the Future of Soil Metagenomics.

Nesme J, Achouak W, Agathos SN, Bailey M, Baldrian P, Brunel D, Frostegård Å, Heulin T, Jansson JK, Jurkevitch E, Kruus KL, Kowalchuk GA, Lagares A, Lappin-Scott HM, Lemanceau P, Le Paslier D, Mandic-Mulec I, Murrell JC, Myrold DD, Nalin R, Nannipieri P, Neufeld JD, O'Gara F, Parnell JJ, Pühler A, Pylro V, Ramos JL, Roesch LF, Schloter M, Schleper C, Sczyrba A, Sessitsch A, Sjöling S, Sørensen J, Sørensen SJ, Tebbe CC, Topp E, Tsiamis G, van Elsas JD, van Keulen G, Widmer F, Wagner M, Zhang T, Zhang X, Zhao L, Zhu YG, Vogel TM, Simonet P.

Front Microbiol. 2016 Feb 10;7:73. doi: 10.3389/fmicb.2016.00073. eCollection 2016. No abstract available.

4.

Reconstructing rare soil microbial genomes using in situ enrichments and metagenomics.

Delmont TO, Eren AM, Maccario L, Prestat E, Esen ÖC, Pelletier E, Le Paslier D, Simonet P, Vogel TM.

Front Microbiol. 2015 Apr 30;6:358. doi: 10.3389/fmicb.2015.00358. eCollection 2015.

5.

16S rRNA and As-Related Functional Diversity: Contrasting Fingerprints in Arsenic-Rich Sediments from an Acid Mine Drainage.

Fahy A, Giloteaux L, Bertin P, Le Paslier D, Médigue C, Weissenbach J, Duran R, Lauga B.

Microb Ecol. 2015 Jul;70(1):154-67. doi: 10.1007/s00248-014-0558-3. Epub 2015 Jan 16.

PMID:
25592635
6.

Growth of nitrite-oxidizing bacteria by aerobic hydrogen oxidation.

Koch H, Galushko A, Albertsen M, Schintlmeister A, Gruber-Dorninger C, Lücker S, Pelletier E, Le Paslier D, Spieck E, Richter A, Nielsen PH, Wagner M, Daims H.

Science. 2014 Aug 29;345(6200):1052-4. doi: 10.1126/science.1256985.

7.

Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes.

Nielsen HB, Almeida M, Juncker AS, Rasmussen S, Li J, Sunagawa S, Plichta DR, Gautier L, Pedersen AG, Le Chatelier E, Pelletier E, Bonde I, Nielsen T, Manichanh C, Arumugam M, Batto JM, Quintanilha Dos Santos MB, Blom N, Borruel N, Burgdorf KS, Boumezbeur F, Casellas F, Doré J, Dworzynski P, Guarner F, Hansen T, Hildebrand F, Kaas RS, Kennedy S, Kristiansen K, Kultima JR, Léonard P, Levenez F, Lund O, Moumen B, Le Paslier D, Pons N, Pedersen O, Prifti E, Qin J, Raes J, Sørensen S, Tap J, Tims S, Ussery DW, Yamada T; MetaHIT Consortium, Renault P, Sicheritz-Ponten T, Bork P, Wang J, Brunak S, Ehrlich SD; MetaHIT Consortium.

Nat Biotechnol. 2014 Aug;32(8):822-8. doi: 10.1038/nbt.2939. Epub 2014 Jul 6.

PMID:
24997787
8.

Enrichment and genome sequence of the group I.1a ammonia-oxidizing Archaeon "Ca. Nitrosotenuis uzonensis" representing a clade globally distributed in thermal habitats.

Lebedeva EV, Hatzenpichler R, Pelletier E, Schuster N, Hauzmayer S, Bulaev A, Grigor'eva NV, Galushko A, Schmid M, Palatinszky M, Le Paslier D, Daims H, Wagner M.

PLoS One. 2013 Nov 20;8(11):e80835. doi: 10.1371/journal.pone.0080835. eCollection 2013.

9.

Gene capture coupled to high-throughput sequencing as a strategy for targeted metagenome exploration.

Denonfoux J, Parisot N, Dugat-Bony E, Biderre-Petit C, Boucher D, Morgavi DP, Le Paslier D, Peyretaillade E, Peyret P.

DNA Res. 2013 Apr;20(2):185-96. doi: 10.1093/dnares/dst001. Epub 2013 Jan 30.

10.

The structure and spatio-temporal distribution of the Archaea in a horizontal subsurface flow constructed wetland.

Bouali M, Zrafi-Nouira I, Bakhrouf A, Le Paslier D, Chaussonnerie S, Ammar E, Sghir A.

Sci Total Environ. 2012 Oct 1;435-436:465-71. doi: 10.1016/j.scitotenv.2012.07.047. Epub 2012 Aug 9.

PMID:
22885352
11.

Characterization of rhizosphere prokaryotic diversity in a horizontal subsurface flow constructed wetland using a PCR cloning-sequencing based approach.

Bouali M, Pelletier E, Chaussonnerie S, Le Paslier D, Bakhrouf A, Sghir A.

Appl Microbiol Biotechnol. 2013 May;97(9):4221-31. doi: 10.1007/s00253-012-4239-1. Epub 2012 Jul 11.

PMID:
22782248
12.

Nitrification expanded: discovery, physiology and genomics of a nitrite-oxidizing bacterium from the phylum Chloroflexi.

Sorokin DY, Lücker S, Vejmelkova D, Kostrikina NA, Kleerebezem R, Rijpstra WI, Damsté JS, Le Paslier D, Muyzer G, Wagner M, van Loosdrecht MC, Daims H.

ISME J. 2012 Dec;6(12):2245-56. doi: 10.1038/ismej.2012.70. Epub 2012 Jul 5.

13.

Structure, fluctuation and magnitude of a natural grassland soil metagenome.

Delmont TO, Prestat E, Keegan KP, Faubladier M, Robe P, Clark IM, Pelletier E, Hirsch PR, Meyer F, Gilbert JA, Le Paslier D, Simonet P, Vogel TM.

ISME J. 2012 Sep;6(9):1677-87. doi: 10.1038/ismej.2011.197. Epub 2012 Feb 2.

14.

Betaproteobacteria dominance and diversity shifts in the bacterial community of a PAH-contaminated soil exposed to phenanthrene.

Martin F, Torelli S, Le Paslier D, Barbance A, Martin-Laurent F, Bru D, Geremia R, Blake G, Jouanneau Y.

Environ Pollut. 2012 Mar;162:345-53. doi: 10.1016/j.envpol.2011.11.032. Epub 2011 Dec 21.

15.

Metabolic diversity among main microorganisms inside an arsenic-rich ecosystem revealed by meta- and proteo-genomics.

Bertin PN, Heinrich-Salmeron A, Pelletier E, Goulhen-Chollet F, Arsène-Ploetze F, Gallien S, Lauga B, Casiot C, Calteau A, Vallenet D, Bonnefoy V, Bruneel O, Chane-Woon-Ming B, Cleiss-Arnold J, Duran R, Elbaz-Poulichet F, Fonknechten N, Giloteaux L, Halter D, Koechler S, Marchal M, Mornico D, Schaeffer C, Smith AA, Van Dorsselaer A, Weissenbach J, Médigue C, Le Paslier D.

ISME J. 2011 Nov;5(11):1735-47. doi: 10.1038/ismej.2011.51. Epub 2011 May 12.

16.

Enterotypes of the human gut microbiome.

Arumugam M, Raes J, Pelletier E, Le Paslier D, Yamada T, Mende DR, Fernandes GR, Tap J, Bruls T, Batto JM, Bertalan M, Borruel N, Casellas F, Fernandez L, Gautier L, Hansen T, Hattori M, Hayashi T, Kleerebezem M, Kurokawa K, Leclerc M, Levenez F, Manichanh C, Nielsen HB, Nielsen T, Pons N, Poulain J, Qin J, Sicheritz-Ponten T, Tims S, Torrents D, Ugarte E, Zoetendal EG, Wang J, Guarner F, Pedersen O, de Vos WM, Brunak S, Doré J; MetaHIT Consortium, Antolín M, Artiguenave F, Blottiere HM, Almeida M, Brechot C, Cara C, Chervaux C, Cultrone A, Delorme C, Denariaz G, Dervyn R, Foerstner KU, Friss C, van de Guchte M, Guedon E, Haimet F, Huber W, van Hylckama-Vlieg J, Jamet A, Juste C, Kaci G, Knol J, Lakhdari O, Layec S, Le Roux K, Maguin E, Mérieux A, Melo Minardi R, M'rini C, Muller J, Oozeer R, Parkhill J, Renault P, Rescigno M, Sanchez N, Sunagawa S, Torrejon A, Turner K, Vandemeulebrouck G, Varela E, Winogradsky Y, Zeller G, Weissenbach J, Ehrlich SD, Bork P.

Nature. 2011 May 12;473(7346):174-80. doi: 10.1038/nature09944. Epub 2011 Apr 20. Erratum in: Nature. 2011 Jun 30;474(7353):666. Nature. 2014 Feb 27;506(7489):516.

17.

Characterization of the active bacterial community involved in natural attenuation processes in arsenic-rich creek sediments.

Bruneel O, Volant A, Gallien S, Chaumande B, Casiot C, Carapito C, Bardil A, Morin G, Brown GE Jr, Personné CJ, Le Paslier D, Schaeffer C, Van Dorsselaer A, Bertin PN, Elbaz-Poulichet F, Arsène-Ploetze F.

Microb Ecol. 2011 May;61(4):793-810. doi: 10.1007/s00248-011-9808-9. Epub 2011 Feb 12.

PMID:
21318282
18.

Clostridium sticklandii, a specialist in amino acid degradation:revisiting its metabolism through its genome sequence.

Fonknechten N, Chaussonnerie S, Tricot S, Lajus A, Andreesen JR, Perchat N, Pelletier E, Gouyvenoux M, Barbe V, Salanoubat M, Le Paslier D, Weissenbach J, Cohen GN, Kreimeyer A.

BMC Genomics. 2010 Oct 11;11:555. doi: 10.1186/1471-2164-11-555.

19.

A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria.

Lücker S, Wagner M, Maixner F, Pelletier E, Koch H, Vacherie B, Rattei T, Damsté JS, Spieck E, Le Paslier D, Daims H.

Proc Natl Acad Sci U S A. 2010 Jul 27;107(30):13479-84. doi: 10.1073/pnas.1003860107. Epub 2010 Jul 12.

20.

Nitrite-driven anaerobic methane oxidation by oxygenic bacteria.

Ettwig KF, Butler MK, Le Paslier D, Pelletier E, Mangenot S, Kuypers MM, Schreiber F, Dutilh BE, Zedelius J, de Beer D, Gloerich J, Wessels HJ, van Alen T, Luesken F, Wu ML, van de Pas-Schoonen KT, Op den Camp HJ, Janssen-Megens EM, Francoijs KJ, Stunnenberg H, Weissenbach J, Jetten MS, Strous M.

Nature. 2010 Mar 25;464(7288):543-8. doi: 10.1038/nature08883.

PMID:
20336137
21.

A human gut microbial gene catalogue established by metagenomic sequencing.

Qin J, Li R, Raes J, Arumugam M, Burgdorf KS, Manichanh C, Nielsen T, Pons N, Levenez F, Yamada T, Mende DR, Li J, Xu J, Li S, Li D, Cao J, Wang B, Liang H, Zheng H, Xie Y, Tap J, Lepage P, Bertalan M, Batto JM, Hansen T, Le Paslier D, Linneberg A, Nielsen HB, Pelletier E, Renault P, Sicheritz-Ponten T, Turner K, Zhu H, Yu C, Li S, Jian M, Zhou Y, Li Y, Zhang X, Li S, Qin N, Yang H, Wang J, Brunak S, Doré J, Guarner F, Kristiansen K, Pedersen O, Parkhill J, Weissenbach J; MetaHIT Consortium, Bork P, Ehrlich SD, Wang J.

Nature. 2010 Mar 4;464(7285):59-65. doi: 10.1038/nature08821.

22.

Molecular analyses of the microbial community composition of an anoxic basin of a municipal wastewater treatment plant reveal a novel lineage of proteobacteria.

Chouari R, Le Paslier D, Daegelen P, Dauga C, Weissenbach J, Sghir A.

Microb Ecol. 2010 Aug;60(2):272-81. doi: 10.1007/s00248-009-9632-7. Epub 2010 Feb 20.

PMID:
20174790
23.

A conserved gene cluster rules anaerobic oxidative degradation of L-ornithine.

Fonknechten N, Perret A, Perchat N, Tricot S, Lechaplais C, Vallenet D, Vergne C, Zaparucha A, Le Paslier D, Weissenbach J, Salanoubat M.

J Bacteriol. 2009 May;191(9):3162-7. doi: 10.1128/JB.01777-08. Epub 2009 Feb 27.

24.

Reverse dissimilatory sulfite reductase as phylogenetic marker for a subgroup of sulfur-oxidizing prokaryotes.

Loy A, Duller S, Baranyi C, Mussmann M, Ott J, Sharon I, Béjà O, Le Paslier D, Dahl C, Wagner M.

Environ Microbiol. 2009 Feb;11(2):289-99. doi: 10.1111/j.1462-2920.2008.01760.x. Epub 2008 Sep 26.

25.

Cloacibacillus evryensis gen. nov., sp. nov., a novel asaccharolytic, mesophilic, amino-acid-degrading bacterium within the phylum 'Synergistetes', isolated from an anaerobic sludge digester.

Ganesan A, Chaussonnerie S, Tarrade A, Dauga C, Bouchez T, Pelletier E, Le Paslier D, Sghir A.

Int J Syst Evol Microbiol. 2008 Sep;58(Pt 9):2003-12. doi: 10.1099/ijs.0.65645-0.

PMID:
18768595
26.

Discovery and characterization of a new bacterial candidate division by an anaerobic sludge digester metagenomic approach.

Guermazi S, Daegelen P, Dauga C, Rivière D, Bouchez T, Godon JJ, Gyapay G, Sghir A, Pelletier E, Weissenbach J, Le Paslier D.

Environ Microbiol. 2008 Aug;10(8):2111-23. doi: 10.1111/j.1462-2920.2008.01632.x. Epub 2008 May 6.

27.

Environmental genomics reveals a functional chlorite dismutase in the nitrite-oxidizing bacterium 'Candidatus Nitrospira defluvii'.

Maixner F, Wagner M, Lücker S, Pelletier E, Schmitz-Esser S, Hace K, Spieck E, Konrat R, Le Paslier D, Daims H.

Environ Microbiol. 2008 Nov;10(11):3043-56. doi: 10.1111/j.1462-2920.2008.01646.x. Epub 2008 May 5.

PMID:
18459973
28.

"Candidatus Cloacamonas acidaminovorans": genome sequence reconstruction provides a first glimpse of a new bacterial division.

Pelletier E, Kreimeyer A, Bocs S, Rouy Z, Gyapay G, Chouari R, Rivière D, Ganesan A, Daegelen P, Sghir A, Cohen GN, Médigue C, Weissenbach J, Le Paslier D.

J Bacteriol. 2008 Apr;190(7):2572-9. doi: 10.1128/JB.01248-07. Epub 2008 Feb 1.

29.

Deciphering the evolution and metabolism of an anammox bacterium from a community genome.

Strous M, Pelletier E, Mangenot S, Rattei T, Lehner A, Taylor MW, Horn M, Daims H, Bartol-Mavel D, Wincker P, Barbe V, Fonknechten N, Vallenet D, Segurens B, Schenowitz-Truong C, Médigue C, Collingro A, Snel B, Dutilh BE, Op den Camp HJ, van der Drift C, Cirpus I, van de Pas-Schoonen KT, Harhangi HR, van Niftrik L, Schmid M, Keltjens J, van de Vossenberg J, Kartal B, Meier H, Frishman D, Huynen MA, Mewes HW, Weissenbach J, Jetten MS, Wagner M, Le Paslier D.

Nature. 2006 Apr 6;440(7085):790-4.

PMID:
16598256
30.

A new soluble 10kDa monoheme cytochrome c-552 from the anammox bacterium Candidatus "Kuenenia stuttgartiensis".

Cirpus IE, de Been M, den Camp HJ, Strous M, Le Paslier D, Kuenen GJ, Jetten MS.

FEMS Microbiol Lett. 2005 Nov 15;252(2):273-8. Epub 2005 Sep 22.

31.

Novel predominant archaeal and bacterial groups revealed by molecular analysis of an anaerobic sludge digester.

Chouari R, Le Paslier D, Daegelen P, Ginestet P, Weissenbach J, Sghir A.

Environ Microbiol. 2005 Aug;7(8):1104-15.

PMID:
16011748
32.

Novel major bacterial candidate division within a municipal anaerobic sludge digester.

Chouari R, Le Paslier D, Dauga C, Daegelen P, Weissenbach J, Sghir A.

Appl Environ Microbiol. 2005 Apr;71(4):2145-53.

33.

Molecular evidence for novel planctomycete diversity in a municipal wastewater treatment plant.

Chouari R, Le Paslier D, Daegelen P, Ginestet P, Weissenbach J, Sghir A.

Appl Environ Microbiol. 2003 Dec;69(12):7354-63.

34.

Anaerobic ammonium oxidation by marine and freshwater planctomycete-like bacteria.

Jetten MS, Sliekers O, Kuypers M, Dalsgaard T, van Niftrik L, Cirpus I, van de Pas-Schoonen K, Lavik G, Thamdrup B, Le Paslier D, Op den Camp HJ, Hulth S, Nielsen LP, Abma W, Third K, Engström P, Kuenen JG, Jørgensen BB, Canfield DE, Sinninghe Damsté JS, Revsbech NP, Fuerst J, Weissenbach J, Wagner M, Schmidt I, Schmid M, Strous M.

Appl Microbiol Biotechnol. 2003 Dec;63(2):107-14. Epub 2003 Sep 4. Review.

PMID:
12955353
35.

Construction and characterization of a Schistosoma mansoni bacterial artificial chromosome library.

Le Paslier MC, Pierce RJ, Merlin F, Hirai H, Wu W, Williams DL, Johnston D, LoVerde PT, Le Paslier D.

Genomics. 2000 Apr 15;65(2):87-94.

PMID:
10783255
36.

Genetic fine mapping of the Miyoshi myopathy locus and exclusion of eight candidate genes.

Bejaoui K, Liu J, McKenna-Yasek D, Le Paslier D, Bossie K, Gilligan DM, Brown RH.

Neurogenetics. 1998 Mar;1(3):189-96.

PMID:
10737122
37.

Localization of Jacobsen syndrome breakpoints on a 40-Mb physical map of distal chromosome 11q.

Tunnacliffe A, Jones C, Le Paslier D, Todd R, Cherif D, Birdsall M, Devenish L, Yousry C, Cotter FE, James MR.

Genome Res. 1999 Jan;9(1):44-52.

38.

Lack of evidence for connexin 43 gene mutations in human autosomal recessive lateralization defects.

Debrus S, Tuffery S, Matsuoka R, Galal O, Sarda P, Sauer U, Bozio A, Tanman B, Toutain A, Claustres M, Le Paslier D, Bouvagnet P.

J Mol Cell Cardiol. 1997 May;29(5):1423-31.

PMID:
9201627
39.

Kerato-epithelin mutations in four 5q31-linked corneal dystrophies.

Munier FL, Korvatska E, Djemaï A, Le Paslier D, Zografos L, Pescia G, Schorderet DF.

Nat Genet. 1997 Mar;15(3):247-51.

PMID:
9054935
40.

Human chromosomal fragile site FRA16B is an amplified AT-rich minisatellite repeat.

Yu S, Mangelsdorf M, Hewett D, Hobson L, Baker E, Eyre HJ, Lapsys N, Le Paslier D, Doggett NA, Sutherland GR, Richards RI.

Cell. 1997 Feb 7;88(3):367-74.

41.

A 5.5-Mb high-resolution integrated map of distal 11q13.

Merscher S, Bekri S, de Leeuw B, Pedeutour F, Grosgeorge J, Shows TB, Müllenbach R, Le Paslier D, Nowak NJ, Gaudray P.

Genomics. 1997 Feb 1;39(3):340-7.

PMID:
9119371
43.

Retinal-specific guanylate cyclase gene mutations in Leber's congenital amaurosis.

Perrault I, Rozet JM, Calvas P, Gerber S, Camuzat A, Dollfus H, Châtelin S, Souied E, Ghazi I, Leowski C, Bonnemaison M, Le Paslier D, Frézal J, Dufier JL, Pittler S, Munnich A, Kaplan J.

Nat Genet. 1996 Dec;14(4):461-4.

PMID:
8944027
44.

Additional copies of a 25 Mb chromosomal region originating from 17q23.1-17qter are present in 90% of high-grade neuroblastomas.

Meddeb M, Danglot G, Chudoba I, Vénuat AM, Bénard J, Avet-Loiseau H, Vasseur B, Le Paslier D, Terrier-Lacombe MJ, Hartmann O, Bernheim A.

Genes Chromosomes Cancer. 1996 Nov;17(3):156-65.

PMID:
8946194
45.

Structure and physical mapping of DR1, a TATA-binding protein-associated phosphoprotein gene, to chromosome 1p22.1 and its exclusion in Stargardt disease (STGD).

Rozet JM, Gerber S, Perrault I, Camuzat A, Calvas P, Viegas-Pequignot E, Molina-Gomes D, Le Paslier D, Chumakov I, Munnich A, Kaplan J.

Genomics. 1996 Sep 15;36(3):554-6. No abstract available.

PMID:
8884286
46.

Genetic and physical mapping of the Chediak-Higashi syndrome on chromosome 1q42-43.

Barrat FJ, Auloge L, Pastural E, Lagelouse RD, Vilmer E, Cant AJ, Weissenbach J, Le Paslier D, Fischer A, de Saint Basile G.

Am J Hum Genet. 1996 Sep;59(3):625-32.

47.

Activation of the human homologue of the Drosophila sina gene in apoptosis and tumor suppression.

Nemani M, Linares-Cruz G, Bruzzoni-Giovanelli H, Roperch JP, Tuynder M, Bougueleret L, Cherif D, Medhioub M, Pasturaud P, Alvaro V, der Sarkissan H, Cazes L, Le Paslier D, Le Gall I, Israeli D, Dausset J, Sigaux F, Chumakov I, Oren M, Calvo F, Amson RB, Cohen D, Telerman A.

Proc Natl Acad Sci U S A. 1996 Aug 20;93(17):9039-42.

48.

A yeast artificial chromosome-based map of the region of chromosome 20 containing the diabetes-susceptibility gene, MODY1, and a myeloid leukemia related gene.

Stoffel M, Le Beau MM, Espinosa R 3rd, Bohlander SF, Le Paslier D, Cohen D, Xiang KS, Cox NJ, Fajans SS, Bell GI.

Proc Natl Acad Sci U S A. 1996 Apr 30;93(9):3937-41.

49.

A long-range physical map of human chromosome 21q22.1 band from the YAC continuum.

Eki T, Abe M, Furuya K, Ahmad I, Fujishima N, Kishida H, Shiratori A, Onozaki T, Yokoyama K, Le Paslier D, Cohen D, Hanaoka F, Murakami Y.

Mamm Genome. 1996 Apr;7(4):303-11.

PMID:
8661703
50.

Genetic and physical mapping at the limb-girdle muscular dystrophy locus (LGMD2B) on chromosome 2p.

Bashir R, Keers S, Strachan T, Passos-Bueno R, Zatz M, Weissenbach J, Le Paslier D, Meisler M, Bushby K.

Genomics. 1996 Apr 1;33(1):46-52.

PMID:
8617508

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