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Items: 27

1.

Imaging cell morphology and physiology using X-rays.

Weinhardt V, Chen JH, Ekman A, McDermott G, Le Gros MA, Larabell C.

Biochem Soc Trans. 2019 Apr 30;47(2):489-508. doi: 10.1042/BST20180036. Epub 2019 Apr 5. Review.

PMID:
30952801
2.

PSF correction in soft X-ray tomography.

Ekman A, Weinhardt V, Chen JH, McDermott G, Le Gros MA, Larabell C.

J Struct Biol. 2018 Oct;204(1):9-18. doi: 10.1016/j.jsb.2018.06.003. Epub 2018 Jun 13.

PMID:
29908247
3.

Soft X-Ray Tomography Reveals Gradual Chromatin Compaction and Reorganization during Neurogenesis In Vivo.

Le Gros MA, Clowney EJ, Magklara A, Yen A, Markenscoff-Papadimitriou E, Colquitt B, Myllys M, Kellis M, Lomvardas S, Larabell CA.

Cell Rep. 2016 Nov 15;17(8):2125-2136. doi: 10.1016/j.celrep.2016.10.060.

4.

Mesoscale imaging with cryo-light and X-rays: Larger than molecular machines, smaller than a cell.

Ekman AA, Chen JH, Guo J, McDermott G, Le Gros MA, Larabell CA.

Biol Cell. 2017 Jan;109(1):24-38. doi: 10.1111/boc.201600044. Epub 2016 Nov 14. Review.

5.

Population-based 3D genome structure analysis reveals driving forces in spatial genome organization.

Tjong H, Li W, Kalhor R, Dai C, Hao S, Gong K, Zhou Y, Li H, Zhou XJ, Le Gros MA, Larabell CA, Chen L, Alber F.

Proc Natl Acad Sci U S A. 2016 Mar 22;113(12):E1663-72. doi: 10.1073/pnas.1512577113. Epub 2016 Mar 7.

6.

Imaging and characterizing cells using tomography.

Do M, Isaacson SA, McDermott G, Le Gros MA, Larabell CA.

Arch Biochem Biophys. 2015 Sep 1;581:111-21. doi: 10.1016/j.abb.2015.01.011. Epub 2015 Jan 17. Review.

7.

Quantitatively imaging chromosomes by correlated cryo-fluorescence and soft x-ray tomographies.

Smith EA, McDermott G, Do M, Leung K, Panning B, Le Gros MA, Larabell CA.

Biophys J. 2014 Oct 21;107(8):1988-1996. doi: 10.1016/j.bpj.2014.09.011.

8.

Biological soft X-ray tomography on beamline 2.1 at the Advanced Light Source.

Le Gros MA, McDermott G, Cinquin BP, Smith EA, Do M, Chao WL, Naulleau PP, Larabell CA.

J Synchrotron Radiat. 2014 Nov;21(Pt 6):1370-7. doi: 10.1107/S1600577514015033. Epub 2014 Oct 1.

9.

Correlative cryogenic tomography of cells using light and soft x-rays.

Smith EA, Cinquin BP, Do M, McDermott G, Le Gros MA, Larabell CA.

Ultramicroscopy. 2014 Aug;143:33-40. doi: 10.1016/j.ultramic.2013.10.013. Epub 2013 Nov 7. Review.

10.

Putting molecules in their place.

Cinquin BP, Do M, McDermott G, Walters AD, Myllys M, Smith EA, Cohen-Fix O, Le Gros MA, Larabell CA.

J Cell Biochem. 2014 Feb;115(2):209-16. doi: 10.1002/jcb.24658.

11.

The influence of spatial variation in chromatin density determined by X-ray tomograms on the time to find DNA binding sites.

Isaacson SA, Larabell CA, Le Gros MA, McQueen DM, Peskin CS.

Bull Math Biol. 2013 Nov;75(11):2093-117. doi: 10.1007/s11538-013-9883-9. Epub 2013 Aug 17.

12.

Correlative microscopy methods that maximize specimen fidelity and data completeness, and improve molecular localization capabilities.

Smith EA, Cinquin BP, McDermott G, Le Gros MA, Parkinson DY, Kim HT, Larabell CA.

J Struct Biol. 2013 Oct;184(1):12-20. doi: 10.1016/j.jsb.2013.03.006. Epub 2013 Mar 24.

13.

Nanoimaging cells using soft X-ray tomography.

Parkinson DY, Epperly LR, McDermott G, Le Gros MA, Boudreau RM, Larabell CA.

Methods Mol Biol. 2013;950:457-81. doi: 10.1007/978-1-62703-137-0_25.

PMID:
23086890
14.

Visualizing and quantifying cell phenotype using soft X-ray tomography.

McDermott G, Fox DM, Epperly L, Wetzler M, Barron AE, Le Gros MA, Larabell CA.

Bioessays. 2012 Apr;34(4):320-7. doi: 10.1002/bies.201100125. Epub 2012 Jan 30. Review.

15.

Visualizing cell architecture and molecular location using soft x-ray tomography and correlated cryo-light microscopy.

McDermott G, Le Gros MA, Larabell CA.

Annu Rev Phys Chem. 2012;63:225-39. doi: 10.1146/annurev-physchem-032511-143818. Epub 2012 Jan 10. Review.

16.

Automatic alignment and reconstruction of images for soft X-ray tomography.

Parkinson DY, Knoechel C, Yang C, Larabell CA, Le Gros MA.

J Struct Biol. 2012 Feb;177(2):259-66. doi: 10.1016/j.jsb.2011.11.027. Epub 2011 Dec 2.

17.

Quantitative analysis of yeast internal architecture using soft X-ray tomography.

Uchida M, Sun Y, McDermott G, Knoechel C, Le Gros MA, Parkinson D, Drubin DG, Larabell CA.

Yeast. 2011 Mar;28(3):227-36. doi: 10.1002/yea.1834. Epub 2010 Dec 22.

18.

Soft X-ray tomography of phenotypic switching and the cellular response to antifungal peptoids in Candida albicans.

Uchida M, McDermott G, Wetzler M, Le Gros MA, Myllys M, Knoechel C, Barron AE, Larabell CA.

Proc Natl Acad Sci U S A. 2009 Nov 17;106(46):19375-80. doi: 10.1073/pnas.0906145106. Epub 2009 Oct 30.

19.

Soft X-ray tomography and cryogenic light microscopy: the cool combination in cellular imaging.

McDermott G, Le Gros MA, Knoechel CG, Uchida M, Larabell CA.

Trends Cell Biol. 2009 Nov;19(11):587-95. doi: 10.1016/j.tcb.2009.08.005. Epub 2009 Oct 7. Review.

20.

High-aperture cryogenic light microscopy.

Le Gros MA, McDermott G, Uchida M, Knoechel CG, Larabell CA.

J Microsc. 2009 Jul;235(1):1-8. doi: 10.1111/j.1365-2818.2009.03184.x.

21.

Quantitative 3-D imaging of eukaryotic cells using soft X-ray tomography.

Parkinson DY, McDermott G, Etkin LD, Le Gros MA, Larabell CA.

J Struct Biol. 2008 Jun;162(3):380-6. doi: 10.1016/j.jsb.2008.02.003. Epub 2008 Mar 4.

22.

X-ray tomography of Schizosaccharomyces pombe.

Gu W, Etkin LD, Le Gros MA, Larabell CA.

Differentiation. 2007 Jul;75(6):529-35. Epub 2007 Apr 25.

PMID:
17459084
23.

Measuring cell motility using quantum dot probes.

Gu W, Pellegrino T, Parak WJ, Boudreau R, Le Gros MA, Alivisatos AP, Larabell CA.

Methods Mol Biol. 2007;374:125-31.

PMID:
17237535
24.

X-ray tomography of whole cells.

Le Gros MA, McDermott G, Larabell CA.

Curr Opin Struct Biol. 2005 Oct;15(5):593-600. Review.

PMID:
16153818
25.

Quantum-dot-based cell motility assay.

Gu W, Pellegrino T, Parak WJ, Boudreau R, Le Gros MA, Gerion D, Alivisatos AP, Larabell CA.

Sci STKE. 2005 Jun 28;2005(290):pl5.

PMID:
15985641
26.

X-ray tomography generates 3-D reconstructions of the yeast, saccharomyces cerevisiae, at 60-nm resolution.

Larabell CA, Le Gros MA.

Mol Biol Cell. 2004 Mar;15(3):957-62. Epub 2003 Dec 29.

27.

Quantum dot-based cell motility assay.

Pellegrino T, Parak WJ, Boudreau R, Le Gros MA, Gerion D, Alivisatos AP, Larabell CA.

Differentiation. 2003 Dec;71(9-10):542-8.

PMID:
14686951

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