Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 64

1.

Federating Structural Models and Data: Outcomes from A Workshop on Archiving Integrative Structures.

Berman HM, Adams PD, Bonvin AA, Burley SK, Carragher B, Chiu W, DiMaio F, Ferrin TE, Gabanyi MJ, Goddard TD, Griffin PR, Haas J, Hanke CA, Hoch JC, Hummer G, Kurisu G, Lawson CL, Leitner A, Markley JL, Meiler J, Montelione GT, Phillips GN Jr, Prisner T, Rappsilber J, Schriemer DC, Schwede T, Seidel CAM, Strutzenberg TS, Svergun DI, Tajkhorshid E, Trewhella J, Vallat B, Velankar S, Vuister GW, Webb B, Westbrook JD, White KL, Sali A.

Structure. 2019 Dec 3;27(12):1745-1759. doi: 10.1016/j.str.2019.11.002. Epub 2019 Nov 25.

2.

Powering Ocean Giants: The Energetics of Shark and Ray Megafauna.

Lawson CL, Halsey LG, Hays GC, Dudgeon CL, Payne NL, Bennett MB, White CR, Richardson AJ.

Trends Ecol Evol. 2019 Nov;34(11):1009-1021. doi: 10.1016/j.tree.2019.07.001. Epub 2019 Jul 30. Review.

PMID:
31375293
3.

Comparing cryo-EM structures.

Lawson CL, Chiu W.

J Struct Biol. 2018 Dec;204(3):523-526. doi: 10.1016/j.jsb.2018.10.004. Epub 2018 Oct 13. No abstract available.

4.

Distribution of evaluation scores for the models submitted to the second cryo-EM model challenge.

Kryshtafovych A, Monastyrskyy B, Adams PD, Lawson CL, Chiu W.

Data Brief. 2018 Sep 8;20:1629-1638. doi: 10.1016/j.dib.2018.08.214. eCollection 2018 Oct.

5.

Evaluation system and web infrastructure for the second cryo-EM model challenge.

Kryshtafovych A, Adams PD, Lawson CL, Chiu W.

J Struct Biol. 2018 Oct;204(1):96-108. doi: 10.1016/j.jsb.2018.07.006. Epub 2018 Jul 12.

6.

The influence of ontogenetic diet variation on consumption rate estimates: a marine example.

Lawson CL, Suthers IM, Smith JA, Schilling HT, Stewart J, Hughes JM, Brodie S.

Sci Rep. 2018 Jul 16;8(1):10725. doi: 10.1038/s41598-018-28479-7.

7.

Worldwide Protein Data Bank biocuration supporting open access to high-quality 3D structural biology data.

Young JY, Westbrook JD, Feng Z, Peisach E, Persikova I, Sala R, Sen S, Berrisford JM, Swaminathan GJ, Oldfield TJ, Gutmanas A, Igarashi R, Armstrong DR, Baskaran K, Chen L, Chen M, Clark AR, Di Costanzo L, Dimitropoulos D, Gao G, Ghosh S, Gore S, Guranovic V, Hendrickx PMS, Hudson BP, Ikegawa Y, Kengaku Y, Lawson CL, Liang Y, Mak L, Mukhopadhyay A, Narayanan B, Nishiyama K, Patwardhan A, Sahni G, Sanz-García E, Sato J, Sekharan MR, Shao C, Smart OS, Tan L, van Ginkel G, Yang H, Zhuravleva MA, Markley JL, Nakamura H, Kurisu G, Kleywegt GJ, Velankar S, Berman HM, Burley SK.

Database (Oxford). 2018 Jan 1;2018. doi: 10.1093/database/bay002.

8.

Anticipating innovations in structural biology.

Berman HM, Lawson CL, Vallat B, Gabanyi MJ.

Q Rev Biophys. 2018 Jan;51:e8. doi: 10.1017/S0033583518000057. Review.

9.

Validation of Structures in the Protein Data Bank.

Gore S, Sanz García E, Hendrickx PMS, Gutmanas A, Westbrook JD, Yang H, Feng Z, Baskaran K, Berrisford JM, Hudson BP, Ikegawa Y, Kobayashi N, Lawson CL, Mading S, Mak L, Mukhopadhyay A, Oldfield TJ, Patwardhan A, Peisach E, Sahni G, Sekharan MR, Sen S, Shao C, Smart OS, Ulrich EL, Yamashita R, Quesada M, Young JY, Nakamura H, Markley JL, Berman HM, Burley SK, Velankar S, Kleywegt GJ.

Structure. 2017 Dec 5;25(12):1916-1927. doi: 10.1016/j.str.2017.10.009. Epub 2017 Nov 22.

10.

Building bridges between cellular and molecular structural biology.

Patwardhan A, Brandt R, Butcher SJ, Collinson L, Gault D, Grünewald K, Hecksel C, Huiskonen JT, Iudin A, Jones ML, Korir PK, Koster AJ, Lagerstedt I, Lawson CL, Mastronarde D, McCormick M, Parkinson H, Rosenthal PB, Saalfeld S, Saibil HR, Sarntivijai S, Solanes Valero I, Subramaniam S, Swedlow JR, Tudose I, Winn M, Kleywegt GJ.

Elife. 2017 Jul 6;6. pii: e25835. doi: 10.7554/eLife.25835.

11.

OneDep: Unified wwPDB System for Deposition, Biocuration, and Validation of Macromolecular Structures in the PDB Archive.

Young JY, Westbrook JD, Feng Z, Sala R, Peisach E, Oldfield TJ, Sen S, Gutmanas A, Armstrong DR, Berrisford JM, Chen L, Chen M, Di Costanzo L, Dimitropoulos D, Gao G, Ghosh S, Gore S, Guranovic V, Hendrickx PMS, Hudson BP, Igarashi R, Ikegawa Y, Kobayashi N, Lawson CL, Liang Y, Mading S, Mak L, Mir MS, Mukhopadhyay A, Patwardhan A, Persikova I, Rinaldi L, Sanz-Garcia E, Sekharan MR, Shao C, Swaminathan GJ, Tan L, Ulrich EL, van Ginkel G, Yamashita R, Yang H, Zhuravleva MA, Quesada M, Kleywegt GJ, Berman HM, Markley JL, Nakamura H, Velankar S, Burley SK.

Structure. 2017 Mar 7;25(3):536-545. doi: 10.1016/j.str.2017.01.004. Epub 2017 Feb 9.

12.

Databases and Archiving for CryoEM.

Patwardhan A, Lawson CL.

Methods Enzymol. 2016;579:393-412. doi: 10.1016/bs.mie.2016.04.015. Epub 2016 Jun 16. Review.

13.

EMDataBank unified data resource for 3DEM.

Lawson CL, Patwardhan A, Baker ML, Hryc C, Garcia ES, Hudson BP, Lagerstedt I, Ludtke SJ, Pintilie G, Sala R, Westbrook JD, Berman HM, Kleywegt GJ, Chiu W.

Nucleic Acids Res. 2016 Jan 4;44(D1):D396-403. doi: 10.1093/nar/gkv1126. Epub 2015 Nov 17.

14.

Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop.

Sali A, Berman HM, Schwede T, Trewhella J, Kleywegt G, Burley SK, Markley J, Nakamura H, Adams P, Bonvin AM, Chiu W, Peraro MD, Di Maio F, Ferrin TE, Grünewald K, Gutmanas A, Henderson R, Hummer G, Iwasaki K, Johnson G, Lawson CL, Meiler J, Marti-Renom MA, Montelione GT, Nilges M, Nussinov R, Patwardhan A, Rappsilber J, Read RJ, Saibil H, Schröder GF, Schwieters CD, Seidel CA, Svergun D, Topf M, Ulrich EL, Velankar S, Westbrook JD.

Structure. 2015 Jul 7;23(7):1156-67. doi: 10.1016/j.str.2015.05.013. Epub 2015 Jun 18.

15.

A 3D cellular context for the macromolecular world.

Patwardhan A, Ashton A, Brandt R, Butcher S, Carzaniga R, Chiu W, Collinson L, Doux P, Duke E, Ellisman MH, Franken E, Grünewald K, Heriche JK, Koster A, Kühlbrandt W, Lagerstedt I, Larabell C, Lawson CL, Saibil HR, Sanz-García E, Subramaniam S, Verkade P, Swedlow JR, Kleywegt GJ.

Nat Struct Mol Biol. 2014 Oct;21(10):841-5. doi: 10.1038/nsmb.2897. No abstract available.

16.

Structure of catabolite activator protein with cobalt(II) and sulfate.

Rao RR, Lawson CL.

Acta Crystallogr F Struct Biol Commun. 2014 May;70(Pt 5):560-3. doi: 10.1107/S2053230X14005366. Epub 2014 Apr 15.

17.

Trendspotting in the Protein Data Bank.

Berman HM, Coimbatore Narayanan B, Di Costanzo L, Dutta S, Ghosh S, Hudson BP, Lawson CL, Peisach E, Prlić A, Rose PW, Shao C, Yang H, Young J, Zardecki C.

FEBS Lett. 2013 Apr 17;587(8):1036-45. doi: 10.1016/j.febslet.2012.12.029. Epub 2013 Jan 18. Review.

18.

Data management challenges in three-dimensional EM.

Patwardhan A, Carazo JM, Carragher B, Henderson R, Heymann JB, Hill E, Jensen GJ, Lagerstedt I, Lawson CL, Ludtke SJ, Mastronarde D, Moore WJ, Roseman A, Rosenthal P, Sorzano CO, Sanz-García E, Scheres SH, Subramaniam S, Westbrook J, Winn M, Swedlow JR, Kleywegt GJ.

Nat Struct Mol Biol. 2012 Dec;19(12):1203-7. doi: 10.1038/nsmb.2426. No abstract available.

19.

The 2010 cryo-EM modeling challenge.

Ludtke SJ, Lawson CL, Kleywegt GJ, Berman H, Chiu W.

Biopolymers. 2012 Sep;97(9):651-4. doi: 10.1002/bip.22081. No abstract available.

PMID:
22696402
20.

Outcome of the first electron microscopy validation task force meeting.

Henderson R, Sali A, Baker ML, Carragher B, Devkota B, Downing KH, Egelman EH, Feng Z, Frank J, Grigorieff N, Jiang W, Ludtke SJ, Medalia O, Penczek PA, Rosenthal PB, Rossmann MG, Schmid MF, Schröder GF, Steven AC, Stokes DL, Westbrook JD, Wriggers W, Yang H, Young J, Berman HM, Chiu W, Kleywegt GJ, Lawson CL.

Structure. 2012 Feb 8;20(2):205-14. doi: 10.1016/j.str.2011.12.014.

21.

Environment-dependent long-range structural distortion in a temperature-sensitive point mutant.

Carey J, Benoff B, Harish B, Yuan L, Lawson CL.

Protein Sci. 2012 Jan;21(1):63-74. doi: 10.1002/pro.759. Epub 2011 Dec 8.

22.

Workshop on the validation and modeling of electron cryo-microscopy structures of biological nanomachines.

Ludtke SJ, Lawson CL, Kleywegt GJ, Berman HM, Chiu W.

Pac Symp Biocomput. 2011:369-73.

23.

EMDataBank.org: unified data resource for CryoEM.

Lawson CL, Baker ML, Best C, Bi C, Dougherty M, Feng P, van Ginkel G, Devkota B, Lagerstedt I, Ludtke SJ, Newman RH, Oldfield TJ, Rees I, Sahni G, Sala R, Velankar S, Warren J, Westbrook JD, Henrick K, Kleywegt GJ, Berman HM, Chiu W.

Nucleic Acids Res. 2011 Jan;39(Database issue):D456-64. doi: 10.1093/nar/gkq880. Epub 2010 Oct 8.

24.

Unified data resource for cryo-EM.

Lawson CL.

Methods Enzymol. 2010;483:73-90. doi: 10.1016/S0076-6879(10)83004-6.

25.

Structure of the Escherichia coli RNA polymerase alpha subunit C-terminal domain.

Lara-González S, Birktoft JJ, Lawson CL.

Acta Crystallogr D Biol Crystallogr. 2010 Jul;66(Pt 7):806-12. doi: 10.1107/S0907444910018470. Epub 2010 Jun 19.

26.

Three-dimensional EM structure of an intact activator-dependent transcription initiation complex.

Hudson BP, Quispe J, Lara-González S, Kim Y, Berman HM, Arnold E, Ebright RH, Lawson CL.

Proc Natl Acad Sci U S A. 2009 Nov 24;106(47):19830-5. doi: 10.1073/pnas.0908782106. Epub 2009 Nov 10.

27.

Signatures of protein-DNA recognition in free DNA binding sites.

Locasale JW, Napoli AA, Chen S, Berman HM, Lawson CL.

J Mol Biol. 2009 Mar 6;386(4):1054-65.

28.

Representation of viruses in the remediated PDB archive.

Lawson CL, Dutta S, Westbrook JD, Henrick K, Berman HM.

Acta Crystallogr D Biol Crystallogr. 2008 Aug;D64(Pt 8):874-82. doi: 10.1107/S0907444908017393. Epub 2008 Jul 17.

29.

Remediation of the protein data bank archive.

Henrick K, Feng Z, Bluhm WF, Dimitropoulos D, Doreleijers JF, Dutta S, Flippen-Anderson JL, Ionides J, Kamada C, Krissinel E, Lawson CL, Markley JL, Nakamura H, Newman R, Shimizu Y, Swaminathan J, Velankar S, Ory J, Ulrich EL, Vranken W, Westbrook J, Yamashita R, Yang H, Young J, Yousufuddin M, Berman HM.

Nucleic Acids Res. 2008 Jan;36(Database issue):D426-33. Epub 2007 Dec 11.

30.

Crystal structure of neurotropism-associated variable surface protein 1 (Vsp1) of Borrelia turicatae.

Lawson CL, Yung BH, Barbour AG, Zückert WR.

J Bacteriol. 2006 Jun;188(12):4522-30.

31.

Residual brain infection in relapsing-fever borreliosis.

Cadavid D, Sondey M, Garcia E, Lawson CL.

J Infect Dis. 2006 May 15;193(10):1451-8. Epub 2006 Apr 4.

PMID:
16619194
32.

Indirect readout of DNA sequence at the primary-kink site in the CAP-DNA complex: recognition of pyrimidine-purine and purine-purine steps.

Napoli AA, Lawson CL, Ebright RH, Berman HM.

J Mol Biol. 2006 Mar 17;357(1):173-83. Epub 2006 Jan 3.

33.

Structural investigation of Borrelia burgdorferi OspB, a bactericidal Fab target.

Becker M, Bunikis J, Lade BD, Dunn JJ, Barbour AG, Lawson CL.

J Biol Chem. 2005 Apr 29;280(17):17363-70. Epub 2005 Feb 15.

34.

A structure-based method for identifying DNA-binding proteins and their sites of DNA-interaction.

McLaughlin WA, Kulp DW, de la Cruz J, Lu XJ, Lawson CL, Berman HM.

J Struct Funct Genomics. 2004;5(4):255-65.

PMID:
15704013
35.

Design of a data model for developing laboratory information management and analysis systems for protein production.

Pajon A, Ionides J, Diprose J, Fillon J, Fogh R, Ashton AW, Berman H, Boucher W, Cygler M, Deleury E, Esnouf R, Janin J, Kim R, Krimm I, Lawson CL, Oeuillet E, Poupon A, Raymond S, Stevens T, van Tilbeurgh H, Westbrook J, Wood P, Ulrich E, Vranken W, Xueli L, Laue E, Stuart DI, Henrick K.

Proteins. 2005 Feb 1;58(2):278-84.

PMID:
15562521
36.

E. coli trp repressor forms a domain-swapped array in aqueous alcohol.

Lawson CL, Benoff B, Berger T, Berman HM, Carey J.

Structure. 2004 Jun;12(6):1099-108.

37.

Biophysical characterization of natural and mutant fluorescent proteins cloned from zooxanthellate corals.

Sun Y, Castner EW Jr, Lawson CL, Falkowski PG.

FEBS Lett. 2004 Jul 16;570(1-3):175-83.

38.

Catabolite activator protein: DNA binding and transcription activation.

Lawson CL, Swigon D, Murakami KS, Darst SA, Berman HM, Ebright RH.

Curr Opin Struct Biol. 2004 Feb;14(1):10-20. Review.

39.

Crystals of trp repressor suitable for high-resolution neutron Laue diffraction studies.

Daniels BV, Myles DA, Forsyth VT, Lawson CL.

Acta Crystallogr D Biol Crystallogr. 2003 Jan;59(Pt 1):136-8. Epub 2002 Dec 19.

PMID:
12499549
40.

Structural basis of transcription activation: the CAP-alpha CTD-DNA complex.

Benoff B, Yang H, Lawson CL, Parkinson G, Liu J, Blatter E, Ebright YW, Berman HM, Ebright RH.

Science. 2002 Aug 30;297(5586):1562-6.

41.

Approaches toward the directed design of a vaccine against Borrelia burgdorferi.

Luft BJ, Dunn JJ, Lawson CL.

J Infect Dis. 2002 Feb 15;185 Suppl 1:S46-51. Review.

PMID:
11865439
42.

Seizure activity and unresponsiveness after hydroxycut ingestion.

Kockler DR, McCarthy MW, Lawson CL.

Pharmacotherapy. 2001 May;21(5):647-51.

PMID:
11349754
43.

Crystal structure of outer surface protein C (OspC) from the Lyme disease spirochete, Borrelia burgdorferi.

Kumaran D, Eswaramoorthy S, Luft BJ, Koide S, Dunn JJ, Lawson CL, Swaminathan S.

EMBO J. 2001 Mar 1;20(5):971-8.

44.

Structural identification of a key protective B-cell epitope in Lyme disease antigen OspA.

Ding W, Huang X, Yang X, Dunn JJ, Luft BJ, Koide S, Lawson CL.

J Mol Biol. 2000 Oct 6;302(5):1153-64.

PMID:
11183781
45.

Structural conservation of neurotropism-associated VspA within the variable Borrelia Vsp-OspC lipoprotein family.

Zuckert WR, Kerentseva TA, Lawson CL, Barbour AG.

J Biol Chem. 2001 Jan 5;276(1):457-63.

46.

High-diffraction-efficiency pseudorandom encoding.

Yang Y, Stark H, Gurkan D, Lawson CL, Cohn RW.

J Opt Soc Am A Opt Image Sci Vis. 2000 Feb;17(2):285-93.

PMID:
10680630
47.

Model for lentivirus capsid core assembly based on crystal dimers of EIAV p26.

Jin Z, Jin L, Peterson DL, Lawson CL.

J Mol Biol. 1999 Feb 12;286(1):83-93.

PMID:
9931251
48.

Crystal structure of Lyme disease antigen outer surface protein A complexed with an Fab.

Li H, Dunn JJ, Luft BJ, Lawson CL.

Proc Natl Acad Sci U S A. 1997 Apr 15;94(8):3584-9.

49.

An atomic view of the L-tryptophan binding site of trp repressor.

Lawson CL.

Nat Struct Biol. 1996 Dec;3(12):986-7. No abstract available.

PMID:
8946848

Supplemental Content

Loading ...
Support Center