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Items: 42

1.

New de novo assembly of the Atlantic bottlenose dolphin (Tursiops truncatus) improves genome completeness and provides haplotype phasing.

Martinez-Viaud KA, Lawley CT, Vergara MM, Ben-Zvi G, Biniashvili T, Baruch K, St Leger J, Le J, Natarajan A, Rivera M, Guillergan M, Jaeger E, Steffy B, Zimin A.

Gigascience. 2019 Jan 29. doi: 10.1093/gigascience/giy168. [Epub ahead of print]

PMID:
30698692
2.

CropSNPdb: a database of SNP array data for Brassica crops and hexaploid bread wheat.

Scheben A, Verpaalen B, Lawley CT, Chan CK, Bayer PE, Batley J, Edwards D.

Plant J. 2018 Dec 13. doi: 10.1111/tpj.14194. [Epub ahead of print]

PMID:
30548723
3.

School-Age Developmental and Educational Outcomes Following Cardiac Procedures in the First Year of Life: A Population-Based Record Linkage Study.

Lawley CM, Winlaw DS, Sholler GF, Martin A, Badawi N, Walker K, Nassar N, Lain SJ.

Pediatr Cardiol. 2018 Dec 10. doi: 10.1007/s00246-018-2029-y. [Epub ahead of print]

PMID:
30535960
4.

Genome assembly and transcriptome resource for river buffalo, Bubalus bubalis (2n = 50).

Williams JL, Iamartino D, Pruitt KD, Sonstegard T, Smith TPL, Low WY, Biagini T, Bomba L, Capomaccio S, Castiglioni B, Coletta A, Corrado F, Ferré F, Iannuzzi L, Lawley C, Macciotta N, McClure M, Mancini G, Matassino D, Mazza R, Milanesi M, Moioli B, Morandi N, Ramunno L, Peretti V, Pilla F, Ramelli P, Schroeder S, Strozzi F, Thibaud-Nissen F, Zicarelli L, Ajmone-Marsan P, Valentini A, Chillemi G, Zimin A.

Gigascience. 2017 Oct 1;6(10):1-6. doi: 10.1093/gigascience/gix088.

5.

Identifying tagging SNPs for African specific genetic variation from the African Diaspora Genome.

Johnston HR, Hu YJ, Gao J, O'Connor TD, Abecasis GR, Wojcik GL, Gignoux CR, Gourraud PA, Lizee A, Hansen M, Genuario R, Bullis D, Lawley C, Kenny EE, Bustamante C, Beaty TH, Mathias RA, Barnes KC, Qin ZS; CAAPA Consortium.

Sci Rep. 2017 Apr 21;7:46398. doi: 10.1038/srep46398.

6.

Mortality, rehospitalizations and costs in children undergoing a cardiac procedure in their first year of life in New South Wales, Australia.

Lawley CM, Lain SJ, Figtree GA, Sholler GF, Winlaw DS, Roberts CL.

Int J Cardiol. 2017 Aug 15;241:156-162. doi: 10.1016/j.ijcard.2017.03.113. Epub 2017 Mar 27.

PMID:
28385359
7.

4D flow magnetic resonance imaging: role in pediatric congenital heart disease.

Lawley CM, Broadhouse KM, Callaghan FM, Winlaw DS, Figtree GA, Grieve SM.

Asian Cardiovasc Thorac Ann. 2018 Jan;26(1):28-37. doi: 10.1177/0218492317694248. Epub 2017 Feb 10. Review.

PMID:
28185475
8.

Diversity analysis of cotton (Gossypium hirsutum L.) germplasm using the CottonSNP63K Array.

Hinze LL, Hulse-Kemp AM, Wilson IW, Zhu QH, Llewellyn DJ, Taylor JM, Spriggs A, Fang DD, Ulloa M, Burke JJ, Giband M, Lacape JM, Van Deynze A, Udall JA, Scheffler JA, Hague S, Wendel JF, Pepper AE, Frelichowski J, Lawley CT, Jones DC, Percy RG, Stelly DM.

BMC Plant Biol. 2017 Feb 3;17(1):37. doi: 10.1186/s12870-017-0981-y.

9.

Genome resources for climate-resilient cowpea, an essential crop for food security.

Muñoz-Amatriaín M, Mirebrahim H, Xu P, Wanamaker SI, Luo M, Alhakami H, Alpert M, Atokple I, Batieno BJ, Boukar O, Bozdag S, Cisse N, Drabo I, Ehlers JD, Farmer A, Fatokun C, Gu YQ, Guo YN, Huynh BL, Jackson SA, Kusi F, Lawley CT, Lucas MR, Ma Y, Timko MP, Wu J, You F, Barkley NA, Roberts PA, Lonardi S, Close TJ.

Plant J. 2017 Mar;89(5):1042-1054. doi: 10.1111/tpj.13404. Epub 2017 Feb 3.

10.

A HapMap leads to a Capsicum annuum SNP infinium array: a new tool for pepper breeding.

Hulse-Kemp AM, Ashrafi H, Plieske J, Lemm J, Stoffel K, Hill T, Luerssen H, Pethiyagoda CL, Lawley CT, Ganal MW, Van Deynze A.

Hortic Res. 2016 Jul 27;3:16036. doi: 10.1038/hortres.2016.36. eCollection 2016.

11.

A high-density SNP genotyping array for Brassica napus and its ancestral diploid species based on optimised selection of single-locus markers in the allotetraploid genome.

Clarke WE, Higgins EE, Plieske J, Wieseke R, Sidebottom C, Khedikar Y, Batley J, Edwards D, Meng J, Li R, Lawley CT, Pauquet J, Laga B, Cheung W, Iniguez-Luy F, Dyrszka E, Rae S, Stich B, Snowdon RJ, Sharpe AG, Ganal MW, Parkin IA.

Theor Appl Genet. 2016 Oct;129(10):1887-99. doi: 10.1007/s00122-016-2746-7. Epub 2016 Jun 30.

12.

Correction: Design and Characterization of a 52K SNP Chip for Goats.

Tosser-Klopp G, Bardou P, Bouchez O, Cabau C, Crooijmans R, Dong Y, Donnadieu-Tonon C, Eggen A, Heuven HC, Jamli S, Jiken AJ, Klopp C, Lawley CT, McEwan J, Martin P, Moreno CR, Mulsant P, Nabihoudine I, Pailhoux E, Palhière I, Rupp R, Sarry J, Sayre BL, Tircazes A, Wang J, Wang W, Zhang W; International Goat Genome Consortium.

PLoS One. 2016 Mar 24;11(3):e0152632. doi: 10.1371/journal.pone.0152632. eCollection 2016. No abstract available.

13.

Prosthetic heart valves in pregnancy, outcomes for women and their babies: a systematic review and meta-analysis.

Lawley CM, Lain SJ, Algert CS, Ford JB, Figtree GA, Roberts CL.

BJOG. 2015 Oct;122(11):1446-55. doi: 10.1111/1471-0528.13491. Epub 2015 Jun 29. Review.

14.

Development of a 63K SNP Array for Cotton and High-Density Mapping of Intraspecific and Interspecific Populations of Gossypium spp.

Hulse-Kemp AM, Lemm J, Plieske J, Ashrafi H, Buyyarapu R, Fang DD, Frelichowski J, Giband M, Hague S, Hinze LL, Kochan KJ, Riggs PK, Scheffler JA, Udall JA, Ulloa M, Wang SS, Zhu QH, Bag SK, Bhardwaj A, Burke JJ, Byers RL, Claverie M, Gore MA, Harker DB, Islam MS, Jenkins JN, Jones DC, Lacape JM, Llewellyn DJ, Percy RG, Pepper AE, Poland JA, Mohan Rai K, Sawant SV, Singh SK, Spriggs A, Taylor JM, Wang F, Yourstone SM, Zheng X, Lawley CT, Ganal MW, Van Deynze A, Wilson IW, Stelly DM.

G3 (Bethesda). 2015 Apr 22;5(6):1187-209. doi: 10.1534/g3.115.018416.

15.

SNPchiMp v.3: integrating and standardizing single nucleotide polymorphism data for livestock species.

Nicolazzi EL, Caprera A, Nazzicari N, Cozzi P, Strozzi F, Lawley C, Pirani A, Soans C, Brew F, Jorjani H, Evans G, Simpson B, Tosser-Klopp G, Brauning R, Williams JL, Stella A.

BMC Genomics. 2015 Apr 10;16:283. doi: 10.1186/s12864-015-1497-1.

16.

Health outcomes of infants born to women with heart valve prostheses: complications of prematurity alone?

Lawley CM, Lain SJ, Figtree GA, Roberts CL.

J Matern Fetal Neonatal Med. 2016;29(2):234-6. doi: 10.3109/14767058.2014.995082. Epub 2014 Dec 24.

PMID:
25483418
17.

Use of the Illumina GoldenGate assay for single nucleotide polymorphism (SNP) genotyping in cereal crops.

Chao S, Lawley C.

Methods Mol Biol. 2015;1245:299-312. doi: 10.1007/978-1-4939-1966-6_22.

PMID:
25373766
18.

Methods for the design, implementation, and analysis of illumina infinium™ SNP assays in plants.

Chagné D, Bianco L, Lawley C, Micheletti D, Jacobs JM.

Methods Mol Biol. 2015;1245:281-98. doi: 10.1007/978-1-4939-1966-6_21.

PMID:
25373765
19.

A high-throughput SNP array in the amphidiploid species Brassica napus shows diversity in resistance genes.

Dalton-Morgan J, Hayward A, Alamery S, Tollenaere R, Mason AS, Campbell E, Patel D, Lorenc MT, Yi B, Long Y, Meng J, Raman R, Raman H, Lawley C, Edwards D, Batley J.

Funct Integr Genomics. 2014 Dec;14(4):643-55. doi: 10.1007/s10142-014-0391-2. Epub 2014 Aug 22.

PMID:
25147024
20.

Heart valve prostheses in pregnancy: outcomes for women and their infants.

Lawley CM, Algert CS, Ford JB, Nippita TA, Figtree GA, Roberts CL.

J Am Heart Assoc. 2014 Jun 26;3(3):e000953. doi: 10.1161/JAHA.114.000953. Erratum in: J Am Heart Assoc. 2014 Aug;3(4):e000414.

21.

Characterization of polyploid wheat genomic diversity using a high-density 90,000 single nucleotide polymorphism array.

Wang S, Wong D, Forrest K, Allen A, Chao S, Huang BE, Maccaferri M, Salvi S, Milner SG, Cattivelli L, Mastrangelo AM, Whan A, Stephen S, Barker G, Wieseke R, Plieske J; International Wheat Genome Sequencing Consortium, Lillemo M, Mather D, Appels R, Dolferus R, Brown-Guedira G, Korol A, Akhunova AR, Feuillet C, Salse J, Morgante M, Pozniak C, Luo MC, Dvorak J, Morell M, Dubcovsky J, Ganal M, Tuberosa R, Lawley C, Mikoulitch I, Cavanagh C, Edwards KJ, Hayden M, Akhunov E.

Plant Biotechnol J. 2014 Aug;12(6):787-96. doi: 10.1111/pbi.12183. Epub 2014 Mar 20.

22.

SNPchiMp: a database to disentangle the SNPchip jungle in bovine livestock.

Nicolazzi EL, Picciolini M, Strozzi F, Schnabel RD, Lawley C, Pirani A, Brew F, Stella A.

BMC Genomics. 2014 Feb 11;15:123. doi: 10.1186/1471-2164-15-123.

23.

Design and characterization of a 52K SNP chip for goats.

Tosser-Klopp G, Bardou P, Bouchez O, Cabau C, Crooijmans R, Dong Y, Donnadieu-Tonon C, Eggen A, Heuven HC, Jamli S, Jiken AJ, Klopp C, Lawley CT, McEwan J, Martin P, Moreno CR, Mulsant P, Nabihoudine I, Pailhoux E, Palhière I, Rupp R, Sarry J, Sayre BL, Tircazes A, Jun Wang, Wang W, Zhang W; International Goat Genome Consortium.

PLoS One. 2014 Jan 22;9(1):e86227. doi: 10.1371/journal.pone.0086227. eCollection 2014. Erratum in: PLoS One. 2016;11(3):e0152632.

24.

Prosthetic heart valves in pregnancy: a systematic review and meta-analysis protocol.

Lawley CM, Lain SJ, Algert CS, Ford JB, Figtree GA, Roberts CL.

Syst Rev. 2014 Jan 21;3:8. doi: 10.1186/2046-4053-3-8.

25.

A student-led process to enhance the learning and teaching of teamwork skills in medicine.

Balasooriya C, Olupeliyawa A, Iqbal M, Lawley C, Cohn A, Ma D, Luu Q.

Educ Health (Abingdon). 2013 May-Aug;26(2):78-84. doi: 10.4103/1357-6283.120698.

26.

Visualizing pericardial inflammation in Dressler's syndrome with cardiac magnetic resonance imaging.

Lawley C, Mazhar J, Grieve SM, Figtree GA.

Int J Cardiol. 2013 Sep 20;168(1):e32-3. doi: 10.1016/j.ijcard.2013.05.082. Epub 2013 Jun 14. No abstract available.

PMID:
23769683
27.

Visualizing pericardial inflammation as the cause of acute chest pain in a patient with a congenital pericardial cyst: the incremental diagnostic value of cardiac magnetic resonance.

Mazhar J, Lawley C, Gill AJ, Grieve SM, Figtree GA.

Eur Heart J. 2013 May;34(19):1413. doi: 10.1093/eurheartj/eht056. Epub 2013 Mar 1. No abstract available.

PMID:
23455359
28.

Development and evaluation of a genome-wide 6K SNP array for diploid sweet cherry and tetraploid sour cherry.

Peace C, Bassil N, Main D, Ficklin S, Rosyara UR, Stegmeir T, Sebolt A, Gilmore B, Lawley C, Mockler TC, Bryant DW, Wilhelm L, Iezzoni A.

PLoS One. 2012;7(12):e48305. doi: 10.1371/journal.pone.0048305. Epub 2012 Dec 20.

29.

Development and evaluation of a 9K SNP array for peach by internationally coordinated SNP detection and validation in breeding germplasm.

Verde I, Bassil N, Scalabrin S, Gilmore B, Lawley CT, Gasic K, Micheletti D, Rosyara UR, Cattonaro F, Vendramin E, Main D, Aramini V, Blas AL, Mockler TC, Bryant DW, Wilhelm L, Troggio M, Sosinski B, Aranzana MJ, Arús P, Iezzoni A, Morgante M, Peace C.

PLoS One. 2012;7(4):e35668. doi: 10.1371/journal.pone.0035668. Epub 2012 Apr 20. Erratum in: PLoS One. 2012;7(6). doi:10.1371/annotation/33f1ba92-c304-4757-91aa-555de64a0768.

30.

Design of a bovine low-density SNP array optimized for imputation.

Boichard D, Chung H, Dassonneville R, David X, Eggen A, Fritz S, Gietzen KJ, Hayes BJ, Lawley CT, Sonstegard TS, Van Tassell CP, VanRaden PM, Viaud-Martinez KA, Wiggans GR; Bovine LD Consortium.

PLoS One. 2012;7(3):e34130. doi: 10.1371/journal.pone.0034130. Epub 2012 Mar 28.

31.

Pilot study evaluating the role of cardiac magnetic resonance imaging in monitoring adjuvant trastuzumab therapy for breast cancer.

Lawley C, Wainwright C, Segelov E, Lynch J, Beith J, McCrohon J.

Asia Pac J Clin Oncol. 2012 Mar;8(1):95-100. doi: 10.1111/j.1743-7563.2011.01462.x. Epub 2012 Jan 12.

PMID:
22369450
32.

Genome-wide SNP detection, validation, and development of an 8K SNP array for apple.

Chagné D, Crowhurst RN, Troggio M, Davey MW, Gilmore B, Lawley C, Vanderzande S, Hellens RP, Kumar S, Cestaro A, Velasco R, Main D, Rees JD, Iezzoni A, Mockler T, Wilhelm L, Van de Weg E, Gardiner SE, Bassil N, Peace C.

PLoS One. 2012;7(2):e31745. doi: 10.1371/journal.pone.0031745. Epub 2012 Feb 21.

33.

Identification of genomic regions associated with phenotypic variation between dog breeds using selection mapping.

Vaysse A, Ratnakumar A, Derrien T, Axelsson E, Rosengren Pielberg G, Sigurdsson S, Fall T, Seppälä EH, Hansen MS, Lawley CT, Karlsson EK; LUPA Consortium, Bannasch D, Vilà C, Lohi H, Galibert F, Fredholm M, Häggström J, Hedhammar A, André C, Lindblad-Toh K, Hitte C, Webster MT.

PLoS Genet. 2011 Oct;7(10):e1002316. doi: 10.1371/journal.pgen.1002316. Epub 2011 Oct 13.

34.

Comparison of buccal and blood-derived canine DNA, either native or whole genome amplified, for array-based genome-wide association studies.

Rincon G, Tengvall K, Belanger JM, Lagoutte L, Medrano JF, André C, Thomas A, Lawley CT, Hansen MS, Lindblad-Toh K, Oberbauer AM.

BMC Res Notes. 2011 Jun 30;4:226. doi: 10.1186/1756-0500-4-226.

35.

Development and characterization of a high density SNP genotyping assay for cattle.

Matukumalli LK, Lawley CT, Schnabel RD, Taylor JF, Allan MF, Heaton MP, O'Connell J, Moore SS, Smith TP, Sonstegard TS, Van Tassell CP.

PLoS One. 2009;4(4):e5350. doi: 10.1371/journal.pone.0005350. Epub 2009 Apr 24.

36.

Accurate whole human genome sequencing using reversible terminator chemistry.

Bentley DR, Balasubramanian S, Swerdlow HP, Smith GP, Milton J, Brown CG, Hall KP, Evers DJ, Barnes CL, Bignell HR, Boutell JM, Bryant J, Carter RJ, Keira Cheetham R, Cox AJ, Ellis DJ, Flatbush MR, Gormley NA, Humphray SJ, Irving LJ, Karbelashvili MS, Kirk SM, Li H, Liu X, Maisinger KS, Murray LJ, Obradovic B, Ost T, Parkinson ML, Pratt MR, Rasolonjatovo IM, Reed MT, Rigatti R, Rodighiero C, Ross MT, Sabot A, Sankar SV, Scally A, Schroth GP, Smith ME, Smith VP, Spiridou A, Torrance PE, Tzonev SS, Vermaas EH, Walter K, Wu X, Zhang L, Alam MD, Anastasi C, Aniebo IC, Bailey DM, Bancarz IR, Banerjee S, Barbour SG, Baybayan PA, Benoit VA, Benson KF, Bevis C, Black PJ, Boodhun A, Brennan JS, Bridgham JA, Brown RC, Brown AA, Buermann DH, Bundu AA, Burrows JC, Carter NP, Castillo N, Chiara E Catenazzi M, Chang S, Neil Cooley R, Crake NR, Dada OO, Diakoumakos KD, Dominguez-Fernandez B, Earnshaw DJ, Egbujor UC, Elmore DW, Etchin SS, Ewan MR, Fedurco M, Fraser LJ, Fuentes Fajardo KV, Scott Furey W, George D, Gietzen KJ, Goddard CP, Golda GS, Granieri PA, Green DE, Gustafson DL, Hansen NF, Harnish K, Haudenschild CD, Heyer NI, Hims MM, Ho JT, Horgan AM, Hoschler K, Hurwitz S, Ivanov DV, Johnson MQ, James T, Huw Jones TA, Kang GD, Kerelska TH, Kersey AD, Khrebtukova I, Kindwall AP, Kingsbury Z, Kokko-Gonzales PI, Kumar A, Laurent MA, Lawley CT, Lee SE, Lee X, Liao AK, Loch JA, Lok M, Luo S, Mammen RM, Martin JW, McCauley PG, McNitt P, Mehta P, Moon KW, Mullens JW, Newington T, Ning Z, Ling Ng B, Novo SM, O'Neill MJ, Osborne MA, Osnowski A, Ostadan O, Paraschos LL, Pickering L, Pike AC, Pike AC, Chris Pinkard D, Pliskin DP, Podhasky J, Quijano VJ, Raczy C, Rae VH, Rawlings SR, Chiva Rodriguez A, Roe PM, Rogers J, Rogert Bacigalupo MC, Romanov N, Romieu A, Roth RK, Rourke NJ, Ruediger ST, Rusman E, Sanches-Kuiper RM, Schenker MR, Seoane JM, Shaw RJ, Shiver MK, Short SW, Sizto NL, Sluis JP, Smith MA, Ernest Sohna Sohna J, Spence EJ, Stevens K, Sutton N, Szajkowski L, Tregidgo CL, Turcatti G, Vandevondele S, Verhovsky Y, Virk SM, Wakelin S, Walcott GC, Wang J, Worsley GJ, Yan J, Yau L, Zuerlein M, Rogers J, Mullikin JC, Hurles ME, McCooke NJ, West JS, Oaks FL, Lundberg PL, Klenerman D, Durbin R, Smith AJ.

Nature. 2008 Nov 6;456(7218):53-9. doi: 10.1038/nature07517.

37.

Genome-wide assessment of worldwide chicken SNP genetic diversity indicates significant absence of rare alleles in commercial breeds.

Muir WM, Wong GK, Zhang Y, Wang J, Groenen MA, Crooijmans RP, Megens HJ, Zhang H, Okimoto R, Vereijken A, Jungerius A, Albers GA, Lawley CT, Delany ME, MacEachern S, Cheng HH.

Proc Natl Acad Sci U S A. 2008 Nov 11;105(45):17312-7. doi: 10.1073/pnas.0806569105. Epub 2008 Nov 3.

38.

SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries.

Van Tassell CP, Smith TP, Matukumalli LK, Taylor JF, Schnabel RD, Lawley CT, Haudenschild CD, Moore SS, Warren WC, Sonstegard TS.

Nat Methods. 2008 Mar;5(3):247-52. doi: 10.1038/nmeth.1185. Epub 2008 Feb 24.

PMID:
18297082
39.

Power to detect risk alleles using genome-wide tag SNP panels.

Eberle MA, Ng PC, Kuhn K, Zhou L, Peiffer DA, Galver L, Viaud-Martinez KA, Lawley CT, Gunderson KL, Shen R, Murray SS.

PLoS Genet. 2007 Oct;3(10):1827-37. Epub 2007 Aug 22.

40.

Hypertension as a cause of end-stage renal failure in South Africa.

Veriava Y, du Toit E, Lawley CG, Milne FJ, Reinach SG.

J Hum Hypertens. 1990 Aug;4(4):379-83.

PMID:
2258879
41.

Sex ratio at birth in a Cape Coloured population.

MacGillivray I, Davey DA, Lawley C.

Soc Sci Med. 1986;22(9):929-30. No abstract available.

PMID:
3738565
42.

The reduction of aliphatic and aromatic N-oxides to the corresponding amines with titanium(III) chloride.

Seaton QF, Lawley CW, Akers HA.

Anal Biochem. 1984 Apr;138(1):238-41.

PMID:
6731844

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