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Items: 35

1.

Gut microbiome and serum metabolome analyses identify molecular biomarkers and altered glutamate metabolism in fibromyalgia.

Clos-Garcia M, Andrés-Marin N, Fernández-Eulate G, Abecia L, Lavín JL, van Liempd S, Cabrera D, Royo F, Valero A, Errazquin N, Vega MCG, Govillard L, Tackett MR, Tejada G, Gónzalez E, Anguita J, Bujanda L, Orcasitas AMC, Aransay AM, Maíz O, López de Munain A, Falcón-Pérez JM.

EBioMedicine. 2019 Aug;46:499-511. doi: 10.1016/j.ebiom.2019.07.031. Epub 2019 Jul 18.

2.

ANP32E, a Protein Involved in Steroid-Refractoriness in Ulcerative Colitis, Identified by a Systems Biology Approach.

Lorén V, Garcia-Jaraquemada A, Naves JE, Carmona X, Mañosa M, Aransay AM, Lavin JL, Sánchez I, Cabré E, Manyé J, Domènech E.

J Crohns Colitis. 2019 Mar 26;13(3):351-361. doi: 10.1093/ecco-jcc/jjy171.

PMID:
30329026
3.

MiR-873-5p acts as an epigenetic regulator in early stages of liver fibrosis and cirrhosis.

Fernández-Ramos D, Fernández-Tussy P, Lopitz-Otsoa F, Gutiérrez-de-Juan V, Navasa N, Barbier-Torres L, Zubiete-Franco I, Simón J, Fernández AF, Arbelaiz A, Aransay AM, Lavín JL, Beraza N, Perugorria MJ, Banales JM, Villa E, Fraga MF, Anguita J, Avila MA, Berasain C, Iruzibieta P, Crespo J, Lu SC, Varela-Rey M, Mato JM, Delgado TC, Martínez-Chantar ML.

Cell Death Dis. 2018 Sep 20;9(10):958. doi: 10.1038/s41419-018-1014-y.

4.

Cluster Locator, online analysis and visualization of gene clustering.

Pazos Obregón F, Soto P, Lavín JL, Cortázar AR, Barrio R, Aransay AM, Cantera R.

Bioinformatics. 2018 Oct 1;34(19):3377-3379. doi: 10.1093/bioinformatics/bty336.

PMID:
29701747
5.

A multi-omic analysis reveals the regulatory role of CD180 during the response of macrophages to Borrelia burgdorferi.

Carreras-González A, Navasa N, Martín-Ruiz I, Lavín JL, Azkargorta M, Atondo E, Barriales D, Macías-Cámara N, Pascual-Itoiz MA, Sampedro L, Tomás-Cortázar J, Peña-Cearra A, Pellón A, Prados-Rosales R, Abecia L, Elortza F, Aransay AM, Rodríguez H, Anguita J.

Emerg Microbes Infect. 2018 Mar 7;7(1):19. doi: 10.1038/s41426-017-0018-5.

6.

Identification of a highly active tannase enzyme from the oral pathogen Fusobacterium nucleatum subsp. polymorphum.

Tomás-Cortázar J, Plaza-Vinuesa L, de Las Rivas B, Lavín JL, Barriales D, Abecia L, Mancheño JM, Aransay AM, Muñoz R, Anguita J, Rodríguez H.

Microb Cell Fact. 2018 Feb 26;17(1):33. doi: 10.1186/s12934-018-0880-4.

7.

Quantum DNA Sequencing: A Peek Into a Dystopic Future?

Lavín JL, Anguita J.

Bioessays. 2018 Mar;40(3). doi: 10.1002/bies.201700248. Epub 2018 Jan 29. No abstract available.

PMID:
29377261
8.

Progressive loss of hybrid histidine kinase genes during the evolution of budding yeasts (Saccharomycotina).

Hérivaux A, Lavín JL, de Bernonville TD, Vandeputte P, Bouchara JP, Gastebois A, Oguiza JA, Papon N.

Curr Genet. 2018 Aug;64(4):841-851. doi: 10.1007/s00294-017-0797-1. Epub 2017 Dec 16.

PMID:
29249052
9.

Role of Aramchol in steatohepatitis and fibrosis in mice.

Iruarrizaga-Lejarreta M, Varela-Rey M, Fernández-Ramos D, Martínez-Arranz I, Delgado TC, Simon J, Juan VG, delaCruz-Villar L, Azkargorta M, Lavin JL, Mayo R, Van Liempd SM, Aurrekoetxea I, Buqué X, Cave DD, Peña A, Rodríguez-Cuesta J, Aransay AM, Elortza F, Falcón-Pérez JM, Aspichueta P, Hayardeny L, Noureddin M, Sanyal AJ, Alonso C, Anguita J, Martínez-Chantar ML, Lu SC, Mato JM.

Hepatol Commun. 2017 Nov;1(9):911-927. doi: 10.1002/hep4.1107. Epub 2017 Oct 4.

10.

Potyvirus virion structure shows conserved protein fold and RNA binding site in ssRNA viruses.

Zamora M, Méndez-López E, Agirrezabala X, Cuesta R, Lavín JL, Sánchez-Pina MA, Aranda MA, Valle M.

Sci Adv. 2017 Sep 20;3(9):eaao2182. doi: 10.1126/sciadv.aao2182. eCollection 2017 Sep.

11.

The immunosuppressive effect of the tick protein, Salp15, is long-lasting and persists in a murine model of hematopoietic transplant.

Tomás-Cortázar J, Martín-Ruiz I, Barriales D, Pascual-Itoiz MÁ, de Juan VG, Caro-Maldonado A, Merino N, Marina A, Blanco FJ, Flores JM, Sutherland JD, Barrio R, Rojas A, Martínez-Chantar ML, Carracedo A, Simó C, García-Cañas V, Abecia L, Lavín JL, Aransay AM, Rodríguez H, Anguita J.

Sci Rep. 2017 Sep 6;7(1):10740. doi: 10.1038/s41598-017-11354-2.

12.

A synbiotic composed of Lactobacillus fermentum CECT5716 and FOS prevents the development of fatty acid liver and glycemic alterations in rats fed a high fructose diet associated with changes in the microbiota.

Rivero-Gutiérrez B, Gámez-Belmonte R, Suárez MD, Lavín JL, Aransay AM, Olivares M, Martínez-Augustin O, Sánchez de Medina F, Zarzuelo A.

Mol Nutr Food Res. 2017 Aug;61(8). doi: 10.1002/mnfr.201600622. Epub 2017 Jun 8.

PMID:
28463404
13.

A fistful of tips for a fruitful high throughput sequencing experiment.

Lavín JL, Sánchez-Morán M, Bárcena L, Cortazar AR, Macías-Cámara N, González M, Aransay AM.

Bioessays. 2017 May;39(5). doi: 10.1002/bies.201700037. Epub 2017 Apr 5. No abstract available.

PMID:
28378933
14.

VerSeDa: vertebrate secretome database.

Cortazar AR, Oguiza JA, Aransay AM, Lavín JL.

Database (Oxford). 2017 Jan 1;2017(1). doi: 10.1093/database/baw171.

15.

SOX17 regulates cholangiocyte differentiation and acts as a tumor suppressor in cholangiocarcinoma.

Merino-Azpitarte M, Lozano E, Perugorria MJ, Esparza-Baquer A, Erice O, Santos-Laso Á, O'Rourke CJ, Andersen JB, Jiménez-Agüero R, Lacasta A, D'Amato M, Briz Ó, Jalan-Sakrikar N, Huebert RC, Thelen KM, Gradilone SA, Aransay AM, Lavín JL, Fernández-Barrena MG, Matheu A, Marzioni M, Gores GJ, Bujanda L, Marin JJG, Banales JM.

J Hepatol. 2017 Jul;67(1):72-83. doi: 10.1016/j.jhep.2017.02.017. Epub 2017 Feb 22.

16.

Epigenetic Networks Regulate the Transcriptional Program in Memory and Terminally Differentiated CD8+ T Cells.

Rodriguez RM, Suarez-Alvarez B, Lavín JL, Mosén-Ansorena D, Baragaño Raneros A, Márquez-Kisinousky L, Aransay AM, Lopez-Larrea C.

J Immunol. 2017 Jan 15;198(2):937-949. doi: 10.4049/jimmunol.1601102. Epub 2016 Dec 14.

17.

Expansion of Signal Transduction Pathways in Fungi by Extensive Genome Duplication.

Corrochano LM, Kuo A, Marcet-Houben M, Polaino S, Salamov A, Villalobos-Escobedo JM, Grimwood J, Álvarez MI, Avalos J, Bauer D, Benito EP, Benoit I, Burger G, Camino LP, Cánovas D, Cerdá-Olmedo E, Cheng JF, Domínguez A, Eliáš M, Eslava AP, Glaser F, Gutiérrez G, Heitman J, Henrissat B, Iturriaga EA, Lang BF, Lavín JL, Lee SC, Li W, Lindquist E, López-García S, Luque EM, Marcos AT, Martin J, McCluskey K, Medina HR, Miralles-Durán A, Miyazaki A, Muñoz-Torres E, Oguiza JA, Ohm RA, Olmedo M, Orejas M, Ortiz-Castellanos L, Pisabarro AG, Rodríguez-Romero J, Ruiz-Herrera J, Ruiz-Vázquez R, Sanz C, Schackwitz W, Shahriari M, Shelest E, Silva-Franco F, Soanes D, Syed K, Tagua VG, Talbot NJ, Thon MR, Tice H, de Vries RP, Wiebenga A, Yadav JS, Braun EL, Baker SE, Garre V, Schmutz J, Horwitz BA, Torres-Martínez S, Idnurm A, Herrera-Estrella A, Gabaldón T, Grigoriev IV.

Curr Biol. 2016 Jun 20;26(12):1577-1584. doi: 10.1016/j.cub.2016.04.038. Epub 2016 May 26.

18.

Comparative and transcriptional analysis of the predicted secretome in the lignocellulose-degrading basidiomycete fungus Pleurotus ostreatus.

Alfaro M, Castanera R, Lavín JL, Grigoriev IV, Oguiza JA, Ramírez L, Pisabarro AG.

Environ Microbiol. 2016 Dec;18(12):4710-4726. doi: 10.1111/1462-2920.13360. Epub 2016 Jun 8.

PMID:
27117896
19.

PECAS: prokaryotic and eukaryotic classical analysis of secretome.

Cortazar AR, Oguiza JA, Aransay AM, Lavín JL.

Amino Acids. 2015 Dec;47(12):2659-63. doi: 10.1007/s00726-015-2058-2. Epub 2015 Aug 2.

PMID:
26233761
20.

Genomewide analysis of phytochrome proteins in the phylum Basidiomycota.

Lavín JL, Ramírez L, Pisabarro AG, Oguiza JA.

J Basic Microbiol. 2015 Sep;55(9):1141-7. doi: 10.1002/jobm.201500078. Epub 2015 Apr 7.

PMID:
25847700
21.

Complete Genome Sequence of the Multiresistant Acinetobacter baumannii Strain AbH12O-A2, Isolated during a Large Outbreak in Spain.

Merino M, Alvarez-Fraga L, Gómez MJ, Aransay AM, Lavín JL, Chaves F, Bou G, Poza M.

Genome Announc. 2014 Nov 13;2(6). pii: e01182-14. doi: 10.1128/genomeA.01182-14.

22.

S-adenosylmethionine levels regulate the schwann cell DNA methylome.

Varela-Rey M, Iruarrizaga-Lejarreta M, Lozano JJ, Aransay AM, Fernandez AF, Lavin JL, Mósen-Ansorena D, Berdasco M, Turmaine M, Luka Z, Wagner C, Lu SC, Esteller M, Mirsky R, Jessen KR, Fraga MF, Martínez-Chantar ML, Mato JM, Woodhoo A.

Neuron. 2014 Mar 5;81(5):1024-1039. doi: 10.1016/j.neuron.2014.01.037.

23.

Dual-histidine kinases in basidiomycete fungi.

Lavín JL, Sarasola-Puente V, Ramírez L, Pisabarro AG, Oguiza JA.

C R Biol. 2014 Feb;337(2):111-6. doi: 10.1016/j.crvi.2013.12.007. Epub 2014 Feb 10.

PMID:
24581805
24.

SECRETOOL: integrated secretome analysis tool for fungi.

Cortázar AR, Aransay AM, Alfaro M, Oguiza JA, Lavín JL.

Amino Acids. 2014 Feb;46(2):471-3. doi: 10.1007/s00726-013-1649-z. Epub 2013 Dec 27.

PMID:
24370983
25.

FUNGALOXPHOS: an integrated database for oxidative phosphorylation in fungi.

Lavín JL, Marcet-Houben M, Gutiérrez-Vázquez RL, Ramírez L, Pisabarro AG, Gabaldón T, Oguiza JA.

Mitochondrion. 2013 Jul;13(4):357-9. doi: 10.1016/j.mito.2013.04.009. Epub 2013 Apr 28.

PMID:
23628689
26.

Two-component signal transduction in Agaricus bisporus: a comparative genomic analysis with other basidiomycetes through the web-based tool BASID2CS.

Lavín JL, García-Yoldi A, Ramírez L, Pisabarro AG, Oguiza JA.

Fungal Genet Biol. 2013 Jun;55:77-84. doi: 10.1016/j.fgb.2012.09.012. Epub 2012 Oct 31.

PMID:
23123423
27.

Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis.

Fernandez-Fueyo E, Ruiz-Dueñas FJ, Ferreira P, Floudas D, Hibbett DS, Canessa P, Larrondo LF, James TY, Seelenfreund D, Lobos S, Polanco R, Tello M, Honda Y, Watanabe T, Watanabe T, Ryu JS, Kubicek CP, Schmoll M, Gaskell J, Hammel KE, St John FJ, Vanden Wymelenberg A, Sabat G, Splinter BonDurant S, Syed K, Yadav JS, Doddapaneni H, Subramanian V, Lavín JL, Oguiza JA, Perez G, Pisabarro AG, Ramirez L, Santoyo F, Master E, Coutinho PM, Henrissat B, Lombard V, Magnuson JK, Kües U, Hori C, Igarashi K, Samejima M, Held BW, Barry KW, LaButti KM, Lapidus A, Lindquist EA, Lucas SM, Riley R, Salamov AA, Hoffmeister D, Schwenk D, Hadar Y, Yarden O, de Vries RP, Wiebenga A, Stenlid J, Eastwood D, Grigoriev IV, Berka RM, Blanchette RA, Kersten P, Martinez AT, Vicuna R, Cullen D.

Proc Natl Acad Sci U S A. 2012 Apr 3;109(14):5458-63. doi: 10.1073/pnas.1119912109. Epub 2012 Mar 20. Erratum in: Proc Natl Acad Sci U S A. 2012 May 22;109(21):8352. San, Ryu Jae [corrected to Ryu, Jae San].

28.

Genomics and transcriptomics characterization of genes expressed during postharvest at 4°C by the edible basidiomycete Pleurotus ostreatus.

Ramírez L, Oguiza JA, Pérez G, Lavín JL, Omarini A, Santoyo F, Alfaro M, Castanera R, Parenti A, Muguerza E, Pisabarro AG.

Int Microbiol. 2011 Jun;14(2):111-20.

29.

The plant cell wall-decomposing machinery underlies the functional diversity of forest fungi.

Eastwood DC, Floudas D, Binder M, Majcherczyk A, Schneider P, Aerts A, Asiegbu FO, Baker SE, Barry K, Bendiksby M, Blumentritt M, Coutinho PM, Cullen D, de Vries RP, Gathman A, Goodell B, Henrissat B, Ihrmark K, Kauserud H, Kohler A, LaButti K, Lapidus A, Lavin JL, Lee YH, Lindquist E, Lilly W, Lucas S, Morin E, Murat C, Oguiza JA, Park J, Pisabarro AG, Riley R, Rosling A, Salamov A, Schmidt O, Schmutz J, Skrede I, Stenlid J, Wiebenga A, Xie X, Kües U, Hibbett DS, Hoffmeister D, Högberg N, Martin F, Grigoriev IV, Watkinson SC.

Science. 2011 Aug 5;333(6043):762-5. doi: 10.1126/science.1205411. Epub 2011 Jul 14. Erratum in: Science. 2011 Sep 30;333(6051):1825.

30.

Differences in two-component signal transduction proteins among the genus Brucella: implications for host preference and pathogenesis.

Lavín JL, Binnewies TT, Pisabarro AG, Ussery DW, García-Lobo JM, Oguiza JA.

Vet Microbiol. 2010 Aug 26;144(3-4):478-83. doi: 10.1016/j.vetmic.2010.01.007. Epub 2010 Jan 28.

PMID:
20153589
31.

Genomic analysis of two-component signal transduction proteins in basidiomycetes.

Lavín JL, Ramírez L, Ussery DW, Pisabarro AG, Oguiza JA.

J Mol Microbiol Biotechnol. 2010;18(2):63-73. doi: 10.1159/000277654. Epub 2010 Jan 23.

PMID:
20110730
32.

Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion.

Martinez D, Challacombe J, Morgenstern I, Hibbett D, Schmoll M, Kubicek CP, Ferreira P, Ruiz-Duenas FJ, Martinez AT, Kersten P, Hammel KE, Vanden Wymelenberg A, Gaskell J, Lindquist E, Sabat G, Bondurant SS, Larrondo LF, Canessa P, Vicuna R, Yadav J, Doddapaneni H, Subramanian V, Pisabarro AG, Lavín JL, Oguiza JA, Master E, Henrissat B, Coutinho PM, Harris P, Magnuson JK, Baker SE, Bruno K, Kenealy W, Hoegger PJ, Kües U, Ramaiya P, Lucas S, Salamov A, Shapiro H, Tu H, Chee CL, Misra M, Xie G, Teter S, Yaver D, James T, Mokrejs M, Pospisek M, Grigoriev IV, Brettin T, Rokhsar D, Berka R, Cullen D.

Proc Natl Acad Sci U S A. 2009 Feb 10;106(6):1954-9. doi: 10.1073/pnas.0809575106. Epub 2009 Feb 4.

33.

Comparative genomics of the oxidative phosphorylation system in fungi.

Lavín JL, Oguiza JA, Ramírez L, Pisabarro AG.

Fungal Genet Biol. 2008 Sep;45(9):1248-56. doi: 10.1016/j.fgb.2008.06.005. Epub 2008 Jul 3.

PMID:
18647654
34.

Genetic networks for the functional study of genomes.

Pisabarro AG, Pérez G, Lavín JL, Ramírez L.

Brief Funct Genomic Proteomic. 2008 Jul;7(4):249-63. doi: 10.1093/bfgp/eln026. Epub 2008 Jun 25.

PMID:
18579617
35.

Comparative genomic analysis of two-component regulatory proteins in Pseudomonas syringae.

Lavín JL, Kiil K, Resano O, Ussery DW, Oguiza JA.

BMC Genomics. 2007 Oct 31;8:397.

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