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Items: 1 to 50 of 243

1.

Identification of 56 Proteins Involved in Embryo-Maternal Interactions in the Bovine Oviduct.

Banliat C, Tsikis G, Labas V, Teixeira-Gomes AP, Com E, Lavigne R, Pineau C, Guyonnet B, Mermillod P, Saint-Dizier M.

Int J Mol Sci. 2020 Jan 11;21(2). pii: E466. doi: 10.3390/ijms21020466.

2.

Characterization of a new podovirus infecting Paenibacillus larvae.

Ribeiro HG, Melo LDR, Oliveira H, Boon M, Lavigne R, Noben JP, Azeredo J, Oliveira A.

Sci Rep. 2019 Dec 30;9(1):20355. doi: 10.1038/s41598-019-56699-y.

3.

Pseudomonas aeruginosa PA5oct Jumbo Phage Impacts Planktonic and Biofilm Population and Reduces Its Host Virulence.

Olszak T, Danis-Wlodarczyk K, Arabski M, Gula G, Maciejewska B, Wasik S, Lood C, Higgins G, Harvey BJ, Lavigne R, Drulis-Kawa Z.

Viruses. 2019 Nov 23;11(12). pii: E1089. doi: 10.3390/v11121089.

4.

'Drc', a structurally novel ssDNA-binding transcription regulator of N4-related bacterial viruses.

Boon M, De Zitter E, De Smet J, Wagemans J, Voet M, Pennemann FL, Schalck T, Kuznedelov K, Severinov K, Van Meervelt L, De Maeyer M, Lavigne R.

Nucleic Acids Res. 2020 Jan 10;48(1):445-459. doi: 10.1093/nar/gkz1048.

PMID:
31724707
5.

p class="ZootaxaTitle">Robber flies (Insecta: Diptera: Asilidae) of Wyoming, USA with keys to genera and species.

Lavigne RJ, Dennis DS.

Zootaxa. 2019 Aug 30;4662(1):zootaxa.4662.1.1. doi: 10.11646/zootaxa.4662.1.1.

PMID:
31716694
6.

Bacteriophage Application for Difficult-to-treat Musculoskeletal Infections: Development of a Standardized Multidisciplinary Treatment Protocol.

Onsea J, Soentjens P, Djebara S, Merabishvili M, Depypere M, Spriet I, De Munter P, Debaveye Y, Nijs S, Vanderschot P, Wagemans J, Pirnay JP, Lavigne R, Metsemakers WJ.

Viruses. 2019 Sep 23;11(10). pii: E891. doi: 10.3390/v11100891.

7.

Combining sequencing approaches to fully resolve a carbapenemase-encoding megaplasmid in a Pseudomonas shirazica clinical strain.

Botelho J, Lood C, Partridge SR, van Noort V, Lavigne R, Grosso F, Peixe L.

Emerg Microbes Infect. 2019;8(1):1186-1194. doi: 10.1080/22221751.2019.1648182.

8.

Global phylogeography and ancient evolution of the widespread human gut virus crAssphage.

Edwards RA, Vega AA, Norman HM, Ohaeri M, Levi K, Dinsdale EA, Cinek O, Aziz RK, McNair K, Barr JJ, Bibby K, Brouns SJJ, Cazares A, de Jonge PA, Desnues C, Díaz Muñoz SL, Fineran PC, Kurilshikov A, Lavigne R, Mazankova K, McCarthy DT, Nobrega FL, Reyes Muñoz A, Tapia G, Trefault N, Tyakht AV, Vinuesa P, Wagemans J, Zhernakova A, Aarestrup FM, Ahmadov G, Alassaf A, Anton J, Asangba A, Billings EK, Cantu VA, Carlton JM, Cazares D, Cho GS, Condeff T, Cortés P, Cranfield M, Cuevas DA, De la Iglesia R, Decewicz P, Doane MP, Dominy NJ, Dziewit L, Elwasila BM, Eren AM, Franz C, Fu J, Garcia-Aljaro C, Ghedin E, Gulino KM, Haggerty JM, Head SR, Hendriksen RS, Hill C, Hyöty H, Ilina EN, Irwin MT, Jeffries TC, Jofre J, Junge RE, Kelley ST, Khan Mirzaei M, Kowalewski M, Kumaresan D, Leigh SR, Lipson D, Lisitsyna ES, Llagostera M, Maritz JM, Marr LC, McCann A, Molshanski-Mor S, Monteiro S, Moreira-Grez B, Morris M, Mugisha L, Muniesa M, Neve H, Nguyen NP, Nigro OD, Nilsson AS, O'Connell T, Odeh R, Oliver A, Piuri M, Prussin Ii AJ, Qimron U, Quan ZX, Rainetova P, Ramírez-Rojas A, Raya R, Reasor K, Rice GAO, Rossi A, Santos R, Shimashita J, Stachler EN, Stene LC, Strain R, Stumpf R, Torres PJ, Twaddle A, Ugochi Ibekwe M, Villagra N, Wandro S, White B, Whiteley A, Whiteson KL, Wijmenga C, Zambrano MM, Zschach H, Dutilh BE.

Nat Microbiol. 2019 Oct;4(10):1727-1736. doi: 10.1038/s41564-019-0494-6. Epub 2019 Jul 8.

PMID:
31285584
9.

Emotion Regulation in Participants Diagnosed With Attention Deficit Hyperactivity Disorder, Before and After an Emotion Regulation Intervention.

Sánchez M, Lavigne R, Romero JF, Elósegui E.

Front Psychol. 2019 May 24;10:1092. doi: 10.3389/fpsyg.2019.01092. eCollection 2019.

10.

Analysis of Spounaviruses as a Case Study for the Overdue Reclassification of Tailed Phages.

Barylski J, Enault F, Dutilh BE, Schuller MB, Edwards RA, Gillis A, Klumpp J, Knezevic P, Krupovic M, Kuhn JH, Lavigne R, Oksanen HM, Sullivan MB, Jang HB, Simmonds P, Aiewsakun P, Wittmann J, Tolstoy I, Brister JR, Kropinski AM, Adriaenssens EM.

Syst Biol. 2020 Jan 1;69(1):110-123. doi: 10.1093/sysbio/syz036.

PMID:
31127947
11.

Dip-a-Dee-Doo-Dah: Bacteriophage-Mediated Rescoring of a Harmoniously Orchestrated RNA Metabolism.

Dendooven T, Lavigne R.

Annu Rev Virol. 2019 Sep 29;6(1):199-213. doi: 10.1146/annurev-virology-092818-015644. Epub 2019 May 17.

PMID:
31100993
12.

Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks.

Bin Jang H, Bolduc B, Zablocki O, Kuhn JH, Roux S, Adriaenssens EM, Brister JR, Kropinski AM, Krupovic M, Lavigne R, Turner D, Sullivan MB.

Nat Biotechnol. 2019 Jun;37(6):632-639. doi: 10.1038/s41587-019-0100-8. Epub 2019 May 6.

13.

New Bacteriophages against Emerging Lineages ST23 and ST258 of Klebsiella pneumoniae and Efficacy Assessment in Galleria mellonella Larvae.

Thiry D, Passet V, Danis-Wlodarczyk K, Lood C, Wagemans J, De Sordi L, van Noort V, Dufour N, Debarbieux L, Mainil JG, Brisse S, Lavigne R.

Viruses. 2019 May 3;11(5). pii: E411. doi: 10.3390/v11050411.

14.

Protection of Phage Applications in Crop Production: A Patent Landscape.

Holtappels D, Lavigne R, Huys I, Wagemans J.

Viruses. 2019 Mar 19;11(3). pii: E277. doi: 10.3390/v11030277. Review.

15.

Innovative teaching in the digital age goes viral.

Gomez-Lucia E, Logue CH, Szyndel MS, Lavigne R.

Nat Microbiol. 2019 Apr;4(4):562-564. doi: 10.1038/s41564-019-0389-6. No abstract available.

PMID:
30858570
16.

Numerous cultivated and uncultivated viruses encode ribosomal proteins.

Mizuno CM, Guyomar C, Roux S, Lavigne R, Rodriguez-Valera F, Sullivan MB, Gillet R, Forterre P, Krupovic M.

Nat Commun. 2019 Feb 14;10(1):752. doi: 10.1038/s41467-019-08672-6.

17.

Peptimapper: proteogenomics workflow for the expert annotation of eukaryotic genomes.

Guillot L, Delage L, Viari A, Vandenbrouck Y, Com E, Ritter A, Lavigne R, Marie D, Peterlongo P, Potin P, Pineau C.

BMC Genomics. 2019 Jan 17;20(1):56. doi: 10.1186/s12864-019-5431-9.

18.

Milk fat composition modifies the texture and appearance of Cantal-type cheeses but not their flavor.

Frétin M, Martin B, Buchin S, Desserre B, Lavigne R, Tixier E, Cirié C, Bord C, Montel MC, Delbès C, Ferlay A.

J Dairy Sci. 2019 Feb;102(2):1131-1143. doi: 10.3168/jds.2018-15534. Epub 2018 Dec 24.

PMID:
30591341
19.

Minimum Information about an Uncultivated Virus Genome (MIUViG).

Roux S, Adriaenssens EM, Dutilh BE, Koonin EV, Kropinski AM, Krupovic M, Kuhn JH, Lavigne R, Brister JR, Varsani A, Amid C, Aziz RK, Bordenstein SR, Bork P, Breitbart M, Cochrane GR, Daly RA, Desnues C, Duhaime MB, Emerson JB, Enault F, Fuhrman JA, Hingamp P, Hugenholtz P, Hurwitz BL, Ivanova NN, Labonté JM, Lee KB, Malmstrom RR, Martinez-Garcia M, Mizrachi IK, Ogata H, Páez-Espino D, Petit MA, Putonti C, Rattei T, Reyes A, Rodriguez-Valera F, Rosario K, Schriml L, Schulz F, Steward GF, Sullivan MB, Sunagawa S, Suttle CA, Temperton B, Tringe SG, Thurber RV, Webster NS, Whiteson KL, Wilhelm SW, Wommack KE, Woyke T, Wrighton KC, Yilmaz P, Yoshida T, Young MJ, Yutin N, Allen LZ, Kyrpides NC, Eloe-Fadrosh EA.

Nat Biotechnol. 2019 Jan;37(1):29-37. doi: 10.1038/nbt.4306. Epub 2018 Dec 17.

20.

Functional Analysis and Antivirulence Properties of a New Depolymerase from a Myovirus That Infects Acinetobacter baumannii Capsule K45.

Oliveira H, Costa AR, Ferreira A, Konstantinides N, Santos SB, Boon M, Noben JP, Lavigne R, Azeredo J.

J Virol. 2019 Feb 5;93(4). pii: e01163-18. doi: 10.1128/JVI.01163-18. Print 2019 Feb 15.

21.

Targeted metagenomics demonstrates the ecological role of IS1071 in bacterial community adaptation to pesticide degradation.

Dunon V, Bers K, Lavigne R, Top EM, Springael D.

Environ Microbiol. 2018 Nov;20(11):4091-4111. doi: 10.1111/1462-2920.14404. Epub 2018 Oct 5.

PMID:
30207068
22.

Larger Than Life: Isolation and Genomic Characterization of a Jumbo Phage That Infects the Bacterial Plant Pathogen, Agrobacterium tumefaciens.

Attai H, Boon M, Phillips K, Noben JP, Lavigne R, Brown PJB.

Front Microbiol. 2018 Aug 14;9:1861. doi: 10.3389/fmicb.2018.01861. eCollection 2018.

23.

Deciphering the Dark Proteome: Use of the Testis and Characterization of Two Dark Proteins.

Melaine N, Com E, Bellaud P, Guillot L, Lagarrigue M, Morrice NA, Guével B, Lavigne R, Velez de la Calle JF, Dojahn J, Pineau C.

J Proteome Res. 2018 Dec 7;17(12):4197-4210. doi: 10.1021/acs.jproteome.8b00387. Epub 2018 Aug 31.

24.

Targeting mechanisms of tailed bacteriophages.

Nobrega FL, Vlot M, de Jonge PA, Dreesens LL, Beaumont HJE, Lavigne R, Dutilh BE, Brouns SJJ.

Nat Rev Microbiol. 2018 Dec;16(12):760-773. doi: 10.1038/s41579-018-0070-8. Review.

PMID:
30104690
25.

Pectobacterium atrosepticum Phage vB_PatP_CB5: A Member of the Proposed Genus 'Phimunavirus'.

Buttimer C, Lucid A, Neve H, Franz CMAP, O'Mahony J, Turner D, Lavigne R, Coffey A.

Viruses. 2018 Jul 26;10(8). pii: E394. doi: 10.3390/v10080394.

26.

Evaluation of the genomic diversity of viruses infecting bacteria, archaea and eukaryotes using a common bioinformatic platform: steps towards a unified taxonomy.

Aiewsakun P, Adriaenssens EM, Lavigne R, Kropinski AM, Simmonds P.

J Gen Virol. 2018 Sep;99(9):1331-1343. doi: 10.1099/jgv.0.001110. Epub 2018 Jul 17.

27.

Catabolism of the groundwater micropollutant 2,6-dichlorobenzamide beyond 2,6-dichlorobenzoate is plasmid encoded in Aminobacter sp. MSH1.

T'Syen J, Raes B, Horemans B, Tassoni R, Leroy B, Lood C, van Noort V, Lavigne R, Wattiez R, Kohler HE, Springael D.

Appl Microbiol Biotechnol. 2018 Sep;102(18):7963-7979. doi: 10.1007/s00253-018-9189-9. Epub 2018 Jul 8.

PMID:
29984394
28.

Iterative Chemical Engineering of Vancomycin Leads to Novel Vancomycin Analogs With a High in Vitro Therapeutic Index.

Mishra NM, Stolarzewicz I, Cannaerts D, Schuermans J, Lavigne R, Looz Y, Landuyt B, Schoofs L, Schols D, Paeshuyse J, Hickenbotham P, Clokie M, Luyten W, Van der Eycken EV, Briers Y.

Front Microbiol. 2018 Jun 7;9:1175. doi: 10.3389/fmicb.2018.01175. eCollection 2018.

29.

Transcriptomic Analysis of the Campylobacter jejuni Response to T4-Like Phage NCTC 12673 Infection.

Sacher JC, Flint A, Butcher J, Blasdel B, Reynolds HM, Lavigne R, Stintzi A, Szymanski CM.

Viruses. 2018 Jun 16;10(6). pii: E332. doi: 10.3390/v10060332.

30.

Identification of Protein-Protein Interactions Using Pool-Array-Based Yeast Two-Hybrid Screening.

Lathouwers T, Wagemans J, Lavigne R.

Methods Mol Biol. 2018;1794:29-48. doi: 10.1007/978-1-4939-7871-7_3.

PMID:
29855949
31.

Novel N4-Like Bacteriophages of Pectobacterium atrosepticum.

Buttimer C, Hendrix H, Lucid A, Neve H, Noben JP, Franz C, O'Mahony J, Lavigne R, Coffey A.

Pharmaceuticals (Basel). 2018 May 14;11(2). pii: E45. doi: 10.3390/ph11020045.

32.

Selection of Potential Therapeutic Bacteriophages that Lyse a CTX-M-15 Extended Spectrum β-Lactamase Producing Salmonella enterica Serovar Typhi Strain from the Democratic Republic of the Congo.

Kakabadze E, Makalatia K, Grdzelishvili N, Bakuradze N, Goderdzishvili M, Kusradze I, Phoba MF, Lunguya O, Lood C, Lavigne R, Jacobs J, Deborggraeve S, De Block T, Van Puyvelde S, Lee D, Coffey A, Sedrakyan A, Soentjens P, De Vos D, Pirnay JP, Chanishvili N.

Viruses. 2018 Apr 3;10(4). pii: E172. doi: 10.3390/v10040172.

33.

Community-led comparative genomic and phenotypic analysis of the aquaculture pathogen Pseudomonas baetica a390T sequenced by Ion semiconductor and Nanopore technologies.

Beaton A, Lood C, Cunningham-Oakes E, MacFadyen A, Mullins AJ, Bestawy WE, Botelho J, Chevalier S, Coleman S, Dalzell C, Dolan SK, Faccenda A, Ghequire MGK, Higgins S, Kutschera A, Murray J, Redway M, Salih T, da Silva AC, Smith BA, Smits N, Thomson R, Woodcock S, Welch M, Cornelis P, Lavigne R, van Noort V, Tucker NP.

FEMS Microbiol Lett. 2018 May 1;365(9). doi: 10.1093/femsle/fny069.

34.

Taxonomy of prokaryotic viruses: 2017 update from the ICTV Bacterial and Archaeal Viruses Subcommittee.

Adriaenssens EM, Wittmann J, Kuhn JH, Turner D, Sullivan MB, Dutilh BE, Jang HB, van Zyl LJ, Klumpp J, Lobocka M, Moreno Switt AI, Rumnieks J, Edwards RA, Uchiyama J, Alfenas-Zerbini P, Petty NK, Kropinski AM, Barylski J, Gillis A, Clokie MRC, Prangishvili D, Lavigne R, Aziz RK, Duffy S, Krupovic M, Poranen MM, Knezevic P, Enault F, Tong Y, Oksanen HM, Rodney Brister J.

Arch Virol. 2018 Apr;163(4):1125-1129. doi: 10.1007/s00705-018-3723-z. Epub 2018 Jan 22. No abstract available.

PMID:
29356990
35.

Comparative Analysis of 37 Acinetobacter Bacteriophages.

Turner D, Ackermann HW, Kropinski AM, Lavigne R, Sutton JM, Reynolds DM.

Viruses. 2017 Dec 24;10(1). pii: E5. doi: 10.3390/v10010005.

36.

The O-specific polysaccharide lyase from the phage LKA1 tailspike reduces Pseudomonas virulence.

Olszak T, Shneider MM, Latka A, Maciejewska B, Browning C, Sycheva LV, Cornelissen A, Danis-Wlodarczyk K, Senchenkova SN, Shashkov AS, Gula G, Arabski M, Wasik S, Miroshnikov KA, Lavigne R, Leiman PG, Knirel YA, Drulis-Kawa Z.

Sci Rep. 2017 Nov 24;7(1):16302. doi: 10.1038/s41598-017-16411-4.

37.

Scrambled eggs: Proteomic portraits and novel biomarkers of egg quality in zebrafish (Danio rerio).

Yilmaz O, Patinote A, Nguyen TV, Com E, Lavigne R, Pineau C, Sullivan CV, Bobe J.

PLoS One. 2017 Nov 16;12(11):e0188084. doi: 10.1371/journal.pone.0188084. eCollection 2017.

38.

Preparing cDNA Libraries from Lytic Phage-Infected Cells for Whole Transcriptome Analysis by RNA-Seq.

Blasdel B, Ceyssens PJ, Lavigne R.

Methods Mol Biol. 2018;1681:185-194. doi: 10.1007/978-1-4939-7343-9_14.

PMID:
29134596
39.

Catabolic task division between two near-isogenic subpopulations co-existing in a herbicide-degrading bacterial consortium: consequences for the interspecies consortium metabolic model.

Albers P, Lood C, Özturk B, Horemans B, Lavigne R, van Noort V, De Mot R, Marchal K, Sanchez-Rodriguez A, Springael D.

Environ Microbiol. 2018 Jan;20(1):85-96. doi: 10.1111/1462-2920.13994. Epub 2017 Dec 15.

PMID:
29124862
40.

Cytoplasmic cyclin D1 controls the migration and invasiveness of mantle lymphoma cells.

Body S, Esteve-Arenys A, Miloudi H, Recasens-Zorzo C, Tchakarska G, Moros A, Bustany S, Vidal-Crespo A, Rodriguez V, Lavigne R, Com E, Casanova I, Mangues R, Weigert O, Sanjuan-Pla A, Menéndez P, Marcq B, Picquenot JM, Pérez-Galán P, Jardin F, Roué G, Sola B.

Sci Rep. 2017 Oct 24;7(1):13946. doi: 10.1038/s41598-017-14222-1.

41.

Elucidation of the relative and absolute stereochemistry of the kalimantacin/batumin antibiotics.

Thistlethwaite IRG, Bull FM, Cui C, Walker PD, Gao SS, Wang L, Song Z, Masschelein J, Lavigne R, Crump MP, Race PR, Simpson TJ, Willis CL.

Chem Sci. 2017 Sep 1;8(9):6196-6201. doi: 10.1039/c7sc01670k. Epub 2017 Jul 11.

42.

A Lytic Providencia rettgeri Virus of Potential Therapeutic Value Is a Deep-Branching Member of the T5virus Genus.

Oliveira H, Pinto G, Hendrix H, Noben JP, Gawor J, Kropinski AM, Łobocka M, Lavigne R, Azeredo J.

Appl Environ Microbiol. 2017 Nov 16;83(23). pii: e01567-17. doi: 10.1128/AEM.01567-17. Print 2017 Dec 1.

43.

Biology and Genomics of an Historic Therapeutic Escherichia coli Bacteriophage Collection.

Baig A, Colom J, Barrow P, Schouler C, Moodley A, Lavigne R, Atterbury R.

Front Microbiol. 2017 Aug 30;8:1652. doi: 10.3389/fmicb.2017.01652. eCollection 2017.

44.

Pro- and anti-inflammatory responses of peripheral blood mononuclear cells induced by Staphylococcus aureus and Pseudomonas aeruginosa phages.

Van Belleghem JD, Clement F, Merabishvili M, Lavigne R, Vaneechoutte M.

Sci Rep. 2017 Aug 14;7(1):8004. doi: 10.1038/s41598-017-08336-9.

45.

DNA-Interacting Characteristics of the Archaeal Rudiviral Protein SIRV2_Gp1.

Peeters E, Boon M, Rollie C, Willaert RG, Voet M, White MF, Prangishvili D, Lavigne R, Quax TEF.

Viruses. 2017 Jul 18;9(7). pii: E190. doi: 10.3390/v9070190.

46.

Pseudomonas predators: understanding and exploiting phage-host interactions.

De Smet J, Hendrix H, Blasdel BG, Danis-Wlodarczyk K, Lavigne R.

Nat Rev Microbiol. 2017 Sep;15(9):517-530. doi: 10.1038/nrmicro.2017.61. Epub 2017 Jun 26. Review.

PMID:
28649138
47.

A checklist of the Robber Flies (Insecta: Diptera: Asilidae) of Wyoming, USA.

Lavigne RJ, Dennis DS.

Zootaxa. 2017 Mar 5;4238(3):335-365. doi: 10.11646/zootaxa.4238.3.2.

PMID:
28603259
48.

Comparative transcriptomics analyses reveal the conservation of an ancestral infectious strategy in two bacteriophage genera.

Blasdel BG, Chevallereau A, Monot M, Lavigne R, Debarbieux L.

ISME J. 2017 Sep;11(9):1988-1996. doi: 10.1038/ismej.2017.63. Epub 2017 May 12.

49.

Investigating the biocontrol and anti-biofilm potential of a three phage cocktail against Cronobacter sakazakii in different brands of infant formula.

Endersen L, Buttimer C, Nevin E, Coffey A, Neve H, Oliveira H, Lavigne R, O'Mahony J.

Int J Food Microbiol. 2017 Jul 17;253:1-11. doi: 10.1016/j.ijfoodmicro.2017.04.009. Epub 2017 Apr 21.

PMID:
28460269
50.

Characterization and genomic analyses of two newly isolated Morganella phages define distant members among Tevenvirinae and Autographivirinae subfamilies.

Oliveira H, Pinto G, Oliveira A, Noben JP, Hendrix H, Lavigne R, Łobocka M, Kropinski AM, Azeredo J.

Sci Rep. 2017 Apr 7;7:46157. doi: 10.1038/srep46157.

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