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Items: 1 to 50 of 65

1.

ORSO (Online Resource for Social Omics): A data-driven social network connecting scientists to genomics datasets.

Lavender CA, Shapiro AJ, Day FS, Fargo DC.

PLoS Comput Biol. 2020 Jan 24;16(1):e1007571. doi: 10.1371/journal.pcbi.1007571. eCollection 2020 Jan.

2.

The Lavender Fertilized Anterior Cruciate Ligament Reconstruction: A Quadriceps Tendon All-Inside Reconstruction Fertilized With Bone Marrow Concentrate, Demineralized Bone Matrix, and Autograft Bone.

Lavender C, Johnson B, Singh V, Dennis E, Torres L.

Arthrosc Tech. 2019 Sep 11;8(9):e1019-e1023. doi: 10.1016/j.eats.2019.05.013. eCollection 2019 Sep.

3.

Nanoscale Spatially Resolved Mapping of Uranium Enrichment.

Kautz E, Burkes D, Joshi V, Lavender C, Devaraj A.

Sci Rep. 2019 Aug 23;9(1):12302. doi: 10.1038/s41598-019-48479-5.

4.

The Fertilized Anterior Cruciate Ligament: An All-Inside Anterior Cruciate Ligament Reconstruction Augmented With Amnion, Bone Marrow Concentrate, and a Suture Tape.

Lavender C, Bishop C.

Arthrosc Tech. 2019 May 6;8(6):e555-e559. doi: 10.1016/j.eats.2019.01.020. eCollection 2019 Jun.

5.

NF-Y controls fidelity of transcription initiation at gene promoters through maintenance of the nucleosome-depleted region.

Oldfield AJ, Henriques T, Kumar D, Burkholder AB, Cinghu S, Paulet D, Bennett BD, Yang P, Scruggs BS, Lavender CA, Rivals E, Adelman K, Jothi R.

Nat Commun. 2019 Jul 11;10(1):3072. doi: 10.1038/s41467-019-10905-7.

6.

Diagnosis of Mycobacterium ulcerans disease: be alert to the possibility of negative initial PCR results.

O'Brien DP, Globan M, Fyfe JM, Lavender CJ, Murrie A, Flanagan D, Meggyesy P, Priestley JT, Leslie D.

Med J Aust. 2019 May;210(9):416. doi: 10.5694/mja2.50046. Epub 2019 Feb 25. No abstract available.

PMID:
30802309
7.

Augmentation of Anterior Cruciate Ligament Reconstruction With Bone Marrow Concentrate and a Suture Tape.

Lavender C, Johnson B, Kopiec A.

Arthrosc Tech. 2018 Nov 19;7(12):e1289-e1293. doi: 10.1016/j.eats.2018.08.020. eCollection 2018 Dec.

8.

Epidemiology of Buruli Ulcer Infections, Victoria, Australia, 2011-2016.

Loftus MJ, Tay EL, Globan M, Lavender CJ, Crouch SR, Johnson PDR, Fyfe JAM.

Emerg Infect Dis. 2018 Nov;24(11):1988-1997. doi: 10.3201/eid2411.171593.

9.

Revealing a human p53 universe.

Nguyen TT, Grimm SA, Bushel PR, Li J, Li Y, Bennett BD, Lavender CA, Ward JM, Fargo DC, Anderson CW, Li L, Resnick MA, Menendez D.

Nucleic Acids Res. 2018 Sep 19;46(16):8153-8167. doi: 10.1093/nar/gky720.

10.

Muver, a computational framework for accurately calling accumulated mutations.

Burkholder AB, Lujan SA, Lavender CA, Grimm SA, Kunkel TA, Fargo DC.

BMC Genomics. 2018 May 9;19(1):345. doi: 10.1186/s12864-018-4753-3.

11.

Opportunities and obstacles for deep learning in biology and medicine.

Ching T, Himmelstein DS, Beaulieu-Jones BK, Kalinin AA, Do BT, Way GP, Ferrero E, Agapow PM, Zietz M, Hoffman MM, Xie W, Rosen GL, Lengerich BJ, Israeli J, Lanchantin J, Woloszynek S, Carpenter AE, Shrikumar A, Xu J, Cofer EM, Lavender CA, Turaga SC, Alexandari AM, Lu Z, Harris DJ, DeCaprio D, Qi Y, Kundaje A, Peng Y, Wiley LK, Segler MHS, Boca SM, Swamidass SJ, Huang A, Gitter A, Greene CS.

J R Soc Interface. 2018 Apr;15(141). pii: 20170387. doi: 10.1098/rsif.2017.0387. Review.

12.

The incubation period of Buruli ulcer (Mycobacterium ulcerans infection) in Victoria, Australia - Remains similar despite changing geographic distribution of disease.

Loftus MJ, Trubiano JA, Tay EL, Lavender CJ, Globan M, Fyfe JAM, Johnson PDR.

PLoS Negl Trop Dis. 2018 Mar 19;12(3):e0006323. doi: 10.1371/journal.pntd.0006323. eCollection 2018 Mar.

13.

Widespread transcriptional pausing and elongation control at enhancers.

Henriques T, Scruggs BS, Inouye MO, Muse GW, Williams LH, Burkholder AB, Lavender CA, Fargo DC, Adelman K.

Genes Dev. 2018 Jan 1;32(1):26-41. doi: 10.1101/gad.309351.117. Epub 2018 Jan 29.

14.

ORIO (Online Resource for Integrative Omics): a web-based platform for rapid integration of next generation sequencing data.

Lavender CA, Shapiro AJ, Burkholder AB, Bennett BD, Adelman K, Fargo DC.

Nucleic Acids Res. 2017 Jun 2;45(10):5678-5690. doi: 10.1093/nar/gkx270.

15.

Histone gene replacement reveals a post-transcriptional role for H3K36 in maintaining metazoan transcriptome fidelity.

Meers MP, Henriques T, Lavender CA, McKay DJ, Strahl BD, Duronio RJ, Adelman K, Matera AG.

Elife. 2017 Mar 27;6. pii: e23249. doi: 10.7554/eLife.23249.

16.

Downstream Antisense Transcription Predicts Genomic Features That Define the Specific Chromatin Environment at Mammalian Promoters.

Lavender CA, Cannady KR, Hoffman JA, Trotter KW, Gilchrist DA, Bennett BD, Burkholder AB, Burd CJ, Fargo DC, Archer TK.

PLoS Genet. 2016 Aug 3;12(8):e1006224. doi: 10.1371/journal.pgen.1006224. eCollection 2016 Aug.

17.

Transosseous Medial Meniscal Root Repair Using a Modified Mason-Allen Suture Configuration.

Lavender CD, Hanzlik SR, Caldwell PE 3rd, Pearson SE.

Arthrosc Tech. 2015 Dec 7;4(6):e781-4. doi: 10.1016/j.eats.2015.07.028. eCollection 2015 Dec.

18.

Molecular epidemiology of tuberculosis in Victoria, Australia, reveals low level of transmission.

Globan M, Lavender C, Leslie D, Brown L, Denholm J, Raios K, Sievers A, Kelly H, Fyfe J.

Int J Tuberc Lung Dis. 2016 May;20(5):652-8. doi: 10.5588/ijtld.15.0437.

PMID:
27084820
19.

Arthroscopic Reverse Remplissage for Posterior Instability.

Lavender CD, Hanzlik SR, Pearson SE, Caldwell PE 3rd.

Arthrosc Tech. 2016 Jan 18;5(1):e43-7. doi: 10.1016/j.eats.2015.09.005. eCollection 2016 Feb.

20.

A low-cost hierarchical nanostructured beta-titanium alloy with high strength.

Devaraj A, Joshi VV, Srivastava A, Manandhar S, Moxson V, Duz VA, Lavender C.

Nat Commun. 2016 Apr 1;7:11176. doi: 10.1038/ncomms11176.

21.

Structure-Based Alignment and Consensus Secondary Structures for Three HIV-Related RNA Genomes.

Lavender CA, Gorelick RJ, Weeks KM.

PLoS Comput Biol. 2015 May 20;11(5):e1004230. doi: 10.1371/journal.pcbi.1004230. eCollection 2015 May.

22.

Model-Free RNA Sequence and Structure Alignment Informed by SHAPE Probing Reveals a Conserved Alternate Secondary Structure for 16S rRNA.

Lavender CA, Lorenz R, Zhang G, Tamayo R, Hofacker IL, Weeks KM.

PLoS Comput Biol. 2015 May 20;11(5):e1004126. doi: 10.1371/journal.pcbi.1004126. eCollection 2015 May.

23.

In-cell SHAPE reveals that free 30S ribosome subunits are in the inactive state.

McGinnis JL, Liu Q, Lavender CA, Devaraj A, McClory SP, Fredrick K, Weeks KM.

Proc Natl Acad Sci U S A. 2015 Feb 24;112(8):2425-30. doi: 10.1073/pnas.1411514112. Epub 2015 Feb 9.

24.

Single-molecule correlated chemical probing of RNA.

Homan PJ, Favorov OV, Lavender CA, Kursun O, Ge X, Busan S, Dokholyan NV, Weeks KM.

Proc Natl Acad Sci U S A. 2014 Sep 23;111(38):13858-63. doi: 10.1073/pnas.1407306111. Epub 2014 Sep 9.

25.

Multicenter external quality assessment program for PCR detection of Mycobacterium ulcerans in clinical and environmental specimens.

Eddyani M, Lavender C, de Rijk WB, Bomans P, Fyfe J, de Jong B, Portaels F.

PLoS One. 2014 Feb 21;9(2):e89407. doi: 10.1371/journal.pone.0089407. eCollection 2014.

26.

Potential wildlife sentinels for monitoring the endemic spread of human buruli ulcer in South-East australia.

Carson C, Lavender CJ, Handasyde KA, O'Brien CR, Hewitt N, Johnson PD, Fyfe JA.

PLoS Negl Trop Dis. 2014 Jan 30;8(1):e2668. doi: 10.1371/journal.pntd.0002668. eCollection 2014.

27.

Clinical, microbiological and pathological findings of Mycobacterium ulcerans infection in three Australian Possum species.

O'Brien CR, Handasyde KA, Hibble J, Lavender CJ, Legione AR, McCowan C, Globan M, Mitchell AT, McCracken HE, Johnson PD, Fyfe JA.

PLoS Negl Trop Dis. 2014 Jan 30;8(1):e2666. doi: 10.1371/journal.pntd.0002666. eCollection 2014.

28.

Fostering a culture of interprofessional education for radiation therapy and medical dosimetry students.

Lavender C, Miller S, Church J, Chen RC, Muresan PA, Adams RD.

Med Dosim. 2014 Spring;39(1):50-3. doi: 10.1016/j.meddos.2013.09.006. Epub 2013 Dec 12.

PMID:
24332484
29.

The incubation period of Buruli ulcer (Mycobacterium ulcerans infection).

Trubiano JA, Lavender CJ, Fyfe JA, Bittmann S, Johnson PD.

PLoS Negl Trop Dis. 2013 Oct 3;7(10):e2463. doi: 10.1371/journal.pntd.0002463. eCollection 2013.

30.

Mycobacterium ulcerans infection in two alpacas.

O'Brien C, Kuseff G, McMillan E, McCowan C, Lavender C, Globan M, Jerrett I, Oppedisano F, Johnson P, Fyfe J.

Aust Vet J. 2013 Jul;91(7):296-300. doi: 10.1111/avj.12071.

PMID:
23782024
31.

Epidemiology and control of tuberculosis in Victoria, a low-burden state in south-eastern Australia, 2005-2010.

Lavender CJ, Globan M, Kelly H, Brown LK, Sievers A, Fyfe JA, Lauer T, Leslie DE.

Int J Tuberc Lung Dis. 2013 Jun;17(6):752-8. doi: 10.5588/ijtld.12.0791.

PMID:
23676157
32.

Direct detection of Mycobacterium ulcerans in clinical specimens and environmental samples.

Lavender CJ, Fyfe JA.

Methods Mol Biol. 2013;943:201-16. doi: 10.1007/978-1-60327-353-4_13.

PMID:
23104291
33.

Effect of latitude on seasonality of tuberculosis, Australia, 2002-2011.

Maclachlan JH, Lavender CJ, Cowie BC.

Emerg Infect Dis. 2012 Nov;18(11):1879-81. doi: 10.3201/eid1811.120456.

34.

Time course of defense mechanisms in bovine endometrium in response to lipopolysaccharide.

Swangchan-Uthai T, Lavender CR, Cheng Z, Fouladi-Nashta AA, Wathes DC.

Biol Reprod. 2012 Dec 13;87(6):135. doi: 10.1095/biolreprod.112.102376. Print 2012 Jun.

PMID:
23077171
35.

Buruli ulcer disease in travelers and differentiation of Mycobacterium ulcerans strains from northern Australia.

Lavender CJ, Globan M, Johnson PD, Charles PG, Jenkin GA, Ghosh N, Clark BM, Martinello M, Fyfe JA.

J Clin Microbiol. 2012 Nov;50(11):3717-21. doi: 10.1128/JCM.01324-12. Epub 2012 Aug 8.

36.

On the origin of Mycobacterium ulcerans, the causative agent of Buruli ulcer.

Doig KD, Holt KE, Fyfe JA, Lavender CJ, Eddyani M, Portaels F, Yeboah-Manu D, Pluschke G, Seemann T, Stinear TP.

BMC Genomics. 2012 Jun 19;13:258. doi: 10.1186/1471-2164-13-258.

37.

Three-dimensional RNA structure refinement by hydroxyl radical probing.

Ding F, Lavender CA, Weeks KM, Dokholyan NV.

Nat Methods. 2012 Apr 15;9(6):603-8. doi: 10.1038/nmeth.1976.

38.

RNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure prediction.

Cruz JA, Blanchet MF, Boniecki M, Bujnicki JM, Chen SJ, Cao S, Das R, Ding F, Dokholyan NV, Flores SC, Huang L, Lavender CA, Lisi V, Major F, Mikolajczak K, Patel DJ, Philips A, Puton T, Santalucia J, Sijenyi F, Hermann T, Rother K, Rother M, Serganov A, Skorupski M, Soltysinski T, Sripakdeevong P, Tuszynska I, Weeks KM, Waldsich C, Wildauer M, Leontis NB, Westhof E.

RNA. 2012 Apr;18(4):610-25. doi: 10.1261/rna.031054.111. Epub 2012 Feb 23.

39.

All-terrain vehicle-related orthopaedic trauma in North Central West Virginia: an 8-year review of a Level I trauma center.

Dietz MJ, Lavender C, Emery SE, Clovis N, Shuler FD, Zuberi J.

J Orthop Trauma. 2012 Jul;26(7):e83-7. doi: 10.1097/BOT.0b013e318228b7ad.

PMID:
22337482
40.

Localised Mycobacterium ulcerans infection in four dogs.

O'Brien CR, McMillan E, Harris O, O'Brien DP, Lavender CJ, Globan M, Legione AR, Fyfe JA.

Aust Vet J. 2011 Dec;89(12):506-10. doi: 10.1111/j.1751-0813.2011.00850.x.

PMID:
22103951
41.

Spontaneous clearance of Mycobacterium ulcerans in a case of Buruli ulcer.

Gordon CL, Buntine JA, Hayman JA, Lavender CJ, Fyfe JA, Hosking P, Johnson PD.

PLoS Negl Trop Dis. 2011 Oct;5(10):e1290. doi: 10.1371/journal.pntd.0001290. Epub 2011 Oct 25. No abstract available.

42.

Risk of Buruli ulcer and detection of Mycobacterium ulcerans in mosquitoes in southeastern Australia.

Lavender CJ, Fyfe JA, Azuolas J, Brown K, Evans RN, Ray LR, Johnson PD.

PLoS Negl Trop Dis. 2011 Sep;5(9):e1305. doi: 10.1371/journal.pntd.0001305. Epub 2011 Sep 20.

43.

Mycobacterium ulcerans DNA not detected in faecal samples from Buruli ulcer patients: results of a pilot study.

Sarfo FS, Lavender CJ, Fyfe JA, Johnson PD, Stinear TP, Phillips RO.

PLoS One. 2011 May 4;6(5):e19611. doi: 10.1371/journal.pone.0019611.

44.

All-oral antibiotic treatment for buruli ulcer: a report of four patients.

Gordon CL, Buntine JA, Hayman JA, Lavender CJ, Fyfe JA, Hosking P, Starr M, Johnson PD.

PLoS Negl Trop Dis. 2010 Nov 30;4(11):e770. doi: 10.1371/journal.pntd.0000770. No abstract available.

45.

A major role for mammals in the ecology of Mycobacterium ulcerans.

Fyfe JA, Lavender CJ, Handasyde KA, Legione AR, O'Brien CR, Stinear TP, Pidot SJ, Seemann T, Benbow ME, Wallace JR, McCowan C, Johnson PD.

PLoS Negl Trop Dis. 2010 Aug 10;4(8):e791. doi: 10.1371/journal.pntd.0000791.

46.

Robust and generic RNA modeling using inferred constraints: a structure for the hepatitis C virus IRES pseudoknot domain.

Lavender CA, Ding F, Dokholyan NV, Weeks KM.

Biochemistry. 2010 Jun 22;49(24):4931-3. doi: 10.1021/bi100142y. Review. Erratum in: Biochemistry. 2010 Jul 20;49(28):5968.

47.

Mycobacterium ulcerans infections in two horses in south-eastern Australia.

van Zyl A, Daniel J, Wayne J, McCowan C, Malik R, Jelfs P, Lavender CJ, Fyfe JA.

Aust Vet J. 2010 Mar;88(3):101-6. doi: 10.1111/j.1751-0813.2009.00544.x. Review.

PMID:
20402694
48.

Multidrug-resistant tuberculosis in Victoria: a 10-year review.

Lavender CJ, Brown LK, Johnson PD.

Med J Aust. 2009 Sep 21;191(6):315-8.

PMID:
19769553
49.

Correlation between Buruli ulcer and vector-borne notifiable diseases, Victoria, Australia.

Johnson PD, Lavender CJ.

Emerg Infect Dis. 2009 Apr;15(4):614-5. doi: 10.3201/eid1504.081162. No abstract available.

50.

Evaluation of VNTR typing for the identification of Mycobacterium ulcerans in environmental samples from Victoria, Australia.

Lavender CJ, Stinear TP, Johnson PD, Azuolas J, Benbow ME, Wallace JR, Fyfe JA.

FEMS Microbiol Lett. 2008 Oct;287(2):250-5. doi: 10.1111/j.1574-6968.2008.01328.x. Epub 2008 Aug 27.

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