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Items: 40

1.

Effects of the Dietary Protein and Carbohydrate Ratio on Gut Microbiomes in Dogs of Different Body Conditions.

Li Q, Lauber CL, Czarnecki-Maulden G, Pan Y, Hannah SS.

MBio. 2017 Jan 24;8(1). pii: e01703-16. doi: 10.1128/mBio.01703-16.

2.

High fat diet drives obesity regardless the composition of gut microbiota in mice.

Rabot S, Membrez M, Blancher F, Berger B, Moine D, Krause L, Bibiloni R, Bruneau A, Gérard P, Siddharth J, Lauber CL, Chou CJ.

Sci Rep. 2016 Aug 31;6:32484. doi: 10.1038/srep32484.

3.

Resolving microbial membership using Abundance and Variability In Taxonomy ('AVIT ).

Chakrabarti A, Siddharth J, Lauber CL, Membrez M, Betrisey B, Loyer C, Chou CJ, Pataky Z, Golay A, Parkinson SJ.

Sci Rep. 2016 Aug 17;6:31655. doi: 10.1038/srep31655.

4.

HLA-B27 and human β2-microglobulin affect the gut microbiota of transgenic rats.

Lin P, Bach M, Asquith M, Lee AY, Akileswaran L, Stauffer P, Davin S, Pan Y, Cambronne ED, Dorris M, Debelius JW, Lauber CL, Ackermann G, Baeza YV, Gill T, Knight R, Colbert RA, Taurog JD, Van Gelder RN, Rosenbaum JT.

PLoS One. 2014 Aug 20;9(8):e105684. doi: 10.1371/journal.pone.0105684. eCollection 2014.

5.

Individual diet has sex-dependent effects on vertebrate gut microbiota.

Bolnick DI, Snowberg LK, Hirsch PE, Lauber CL, Org E, Parks B, Lusis AJ, Knight R, Caporaso JG, Svanbäck R.

Nat Commun. 2014 Jul 29;5:4500. doi: 10.1038/ncomms5500.

6.

Communities of microbial eukaryotes in the mammalian gut within the context of environmental eukaryotic diversity.

Parfrey LW, Walters WA, Lauber CL, Clemente JC, Berg-Lyons D, Teiling C, Kodira C, Mohiuddin M, Brunelle J, Driscoll M, Fierer N, Gilbert JA, Knight R.

Front Microbiol. 2014 Jun 19;5:298. doi: 10.3389/fmicb.2014.00298. eCollection 2014.

7.

Vertebrate decomposition is accelerated by soil microbes.

Lauber CL, Metcalf JL, Keepers K, Ackermann G, Carter DO, Knight R.

Appl Environ Microbiol. 2014 Aug;80(16):4920-9. doi: 10.1128/AEM.00957-14. Epub 2014 Jun 6.

8.

Bacterial phylogeny structures soil resistomes across habitats.

Forsberg KJ, Patel S, Gibson MK, Lauber CL, Knight R, Fierer N, Dantas G.

Nature. 2014 May 29;509(7502):612-6. doi: 10.1038/nature13377. Epub 2014 May 21.

9.

Individuals' diet diversity influences gut microbial diversity in two freshwater fish (threespine stickleback and Eurasian perch).

Bolnick DI, Snowberg LK, Hirsch PE, Lauber CL, Knight R, Caporaso JG, Svanbäck R.

Ecol Lett. 2014 Aug;17(8):979-87. doi: 10.1111/ele.12301. Epub 2014 May 22.

10.

A microbial clock provides an accurate estimate of the postmortem interval in a mouse model system.

Metcalf JL, Wegener Parfrey L, Gonzalez A, Lauber CL, Knights D, Ackermann G, Humphrey GC, Gebert MJ, Van Treuren W, Berg-Lyons D, Keepers K, Guo Y, Bullard J, Fierer N, Carter DO, Knight R.

Elife. 2013 Oct 15;2:e01104. doi: 10.7554/eLife.01104.

11.

Cell size distributions of soil bacterial and archaeal taxa.

Portillo MC, Leff JW, Lauber CL, Fierer N.

Appl Environ Microbiol. 2013 Dec;79(24):7610-7. doi: 10.1128/AEM.02710-13. Epub 2013 Sep 27.

12.

Temporal variability in soil microbial communities across land-use types.

Lauber CL, Ramirez KS, Aanderud Z, Lennon J, Fierer N.

ISME J. 2013 Aug;7(8):1641-50. doi: 10.1038/ismej.2013.50. Epub 2013 Apr 4.

13.

Cross-biome metagenomic analyses of soil microbial communities and their functional attributes.

Fierer N, Leff JW, Adams BJ, Nielsen UN, Bates ST, Lauber CL, Owens S, Gilbert JA, Wall DH, Caporaso JG.

Proc Natl Acad Sci U S A. 2012 Dec 26;109(52):21390-5. doi: 10.1073/pnas.1215210110. Epub 2012 Dec 10.

14.

Diversity, distribution and sources of bacteria in residential kitchens.

Flores GE, Bates ST, Caporaso JG, Lauber CL, Leff JW, Knight R, Fierer N.

Environ Microbiol. 2013 Feb;15(2):588-96. doi: 10.1111/1462-2920.12036. Epub 2012 Nov 22.

15.

Spatial and temporal dynamics of the microbial community in the Hanford unconfined aquifer.

Lin X, McKinley J, Resch CT, Kaluzny R, Lauber CL, Fredrickson J, Knight R, Konopka A.

ISME J. 2012 Sep;6(9):1665-76. doi: 10.1038/ismej.2012.26. Epub 2012 Mar 29.

16.

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms.

Caporaso JG, Lauber CL, Walters WA, Berg-Lyons D, Huntley J, Fierer N, Owens SM, Betley J, Fraser L, Bauer M, Gormley N, Gilbert JA, Smith G, Knight R.

ISME J. 2012 Aug;6(8):1621-4. doi: 10.1038/ismej.2012.8. Epub 2012 Mar 8.

17.

The under-recognized dominance of Verrucomicrobia in soil bacterial communities.

Bergmann GT, Bates ST, Eilers KG, Lauber CL, Caporaso JG, Walters WA, Knight R, Fierer N.

Soil Biol Biochem. 2011 Jul;43(7):1450-1455.

18.

Composition of human skin microbiota affects attractiveness to malaria mosquitoes.

Verhulst NO, Qiu YT, Beijleveld H, Maliepaard C, Knights D, Schulz S, Berg-Lyons D, Lauber CL, Verduijn W, Haasnoot GW, Mumm R, Bouwmeester HJ, Claas FH, Dicke M, van Loon JJ, Takken W, Knight R, Smallegange RC.

PLoS One. 2011;6(12):e28991. doi: 10.1371/journal.pone.0028991. Epub 2011 Dec 28.

19.

Experimental and analytical tools for studying the human microbiome.

Kuczynski J, Lauber CL, Walters WA, Parfrey LW, Clemente JC, Gevers D, Knight R.

Nat Rev Genet. 2011 Dec 16;13(1):47-58. doi: 10.1038/nrg3129. Review.

20.

SitePainter: a tool for exploring biogeographical patterns.

Gonzalez A, Stombaugh J, Lauber CL, Fierer N, Knight R.

Bioinformatics. 2012 Feb 1;28(3):436-8. doi: 10.1093/bioinformatics/btr685. Epub 2011 Dec 9.

21.

Comparative metagenomic, phylogenetic and physiological analyses of soil microbial communities across nitrogen gradients.

Fierer N, Lauber CL, Ramirez KS, Zaneveld J, Bradford MA, Knight R.

ISME J. 2012 May;6(5):1007-17. doi: 10.1038/ismej.2011.159. Epub 2011 Dec 1.

22.

Microbial biogeography of public restroom surfaces.

Flores GE, Bates ST, Knights D, Lauber CL, Stombaugh J, Knight R, Fierer N.

PLoS One. 2011;6(11):e28132. doi: 10.1371/journal.pone.0028132. Epub 2011 Nov 23.

23.

Co-habiting amphibian species harbor unique skin bacterial communities in wild populations.

McKenzie VJ, Bowers RM, Fierer N, Knight R, Lauber CL.

ISME J. 2012 Mar;6(3):588-96. doi: 10.1038/ismej.2011.129. Epub 2011 Sep 29.

24.

Moving pictures of the human microbiome.

Caporaso JG, Lauber CL, Costello EK, Berg-Lyons D, Gonzalez A, Stombaugh J, Knights D, Gajer P, Ravel J, Fierer N, Gordon JI, Knight R.

Genome Biol. 2011;12(5):R50. doi: 10.1186/gb-2011-12-5-r50.

25.

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications.

Yilmaz P, Kottmann R, Field D, Knight R, Cole JR, Amaral-Zettler L, Gilbert JA, Karsch-Mizrachi I, Johnston A, Cochrane G, Vaughan R, Hunter C, Park J, Morrison N, Rocca-Serra P, Sterk P, Arumugam M, Bailey M, Baumgartner L, Birren BW, Blaser MJ, Bonazzi V, Booth T, Bork P, Bushman FD, Buttigieg PL, Chain PS, Charlson E, Costello EK, Huot-Creasy H, Dawyndt P, DeSantis T, Fierer N, Fuhrman JA, Gallery RE, Gevers D, Gibbs RA, San Gil I, Gonzalez A, Gordon JI, Guralnick R, Hankeln W, Highlander S, Hugenholtz P, Jansson J, Kau AL, Kelley ST, Kennedy J, Knights D, Koren O, Kuczynski J, Kyrpides N, Larsen R, Lauber CL, Legg T, Ley RE, Lozupone CA, Ludwig W, Lyons D, Maguire E, Methé BA, Meyer F, Muegge B, Nakielny S, Nelson KE, Nemergut D, Neufeld JD, Newbold LK, Oliver AE, Pace NR, Palanisamy G, Peplies J, Petrosino J, Proctor L, Pruesse E, Quast C, Raes J, Ratnasingham S, Ravel J, Relman DA, Assunta-Sansone S, Schloss PD, Schriml L, Sinha R, Smith MI, Sodergren E, Spo A, Stombaugh J, Tiedje JM, Ward DV, Weinstock GM, Wendel D, White O, Whiteley A, Wilke A, Wortman JR, Yatsunenko T, Glöckner FO.

Nat Biotechnol. 2011 May;29(5):415-20. doi: 10.1038/nbt.1823.

26.

PrimerProspector: de novo design and taxonomic analysis of barcoded polymerase chain reaction primers.

Walters WA, Caporaso JG, Lauber CL, Berg-Lyons D, Fierer N, Knight R.

Bioinformatics. 2011 Apr 15;27(8):1159-61. doi: 10.1093/bioinformatics/btr087. Epub 2011 Feb 23.

27.

Consistent effects of nitrogen fertilization on soil bacterial communities in contrasting systems.

Ramirez KS, Lauber CL, Knight R, Bradford MA, Fierer N.

Ecology. 2010 Dec;91(12):3463-70; discussion 3503-14. Erratum in: Ecology. 2011 Jun;92(6):1384.

PMID:
21302816
28.

Soil bacterial diversity in the Arctic is not fundamentally different from that found in other biomes.

Chu H, Fierer N, Lauber CL, Caporaso JG, Knight R, Grogan P.

Environ Microbiol. 2010 Nov;12(11):2998-3006. doi: 10.1111/j.1462-2920.2010.02277.x. Erratum in: Environ Microbiol. 2011 Mar;13(3):833.

PMID:
20561020
29.

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample.

Caporaso JG, Lauber CL, Walters WA, Berg-Lyons D, Lozupone CA, Turnbaugh PJ, Fierer N, Knight R.

Proc Natl Acad Sci U S A. 2011 Mar 15;108 Suppl 1:4516-22. doi: 10.1073/pnas.1000080107. Epub 2010 Jun 3.

30.

Soil bacterial and fungal communities across a pH gradient in an arable soil.

Rousk J, Bååth E, Brookes PC, Lauber CL, Lozupone C, Caporaso JG, Knight R, Fierer N.

ISME J. 2010 Oct;4(10):1340-51. doi: 10.1038/ismej.2010.58. Epub 2010 May 6.

PMID:
20445636
31.

Direct sequencing of the human microbiome readily reveals community differences.

Kuczynski J, Costello EK, Nemergut DR, Zaneveld J, Lauber CL, Knights D, Koren O, Fierer N, Kelley ST, Ley RE, Gordon JI, Knight R.

Genome Biol. 2010;11(5):210. doi: 10.1186/gb-2010-11-5-210. Epub 2010 May 5. Review.

32.

Effect of storage conditions on the assessment of bacterial community structure in soil and human-associated samples.

Lauber CL, Zhou N, Gordon JI, Knight R, Fierer N.

FEMS Microbiol Lett. 2010 Jun;307(1):80-6. doi: 10.1111/j.1574-6968.2010.01965.x. Epub 2010 Mar 25.

33.

Forensic identification using skin bacterial communities.

Fierer N, Lauber CL, Zhou N, McDonald D, Costello EK, Knight R.

Proc Natl Acad Sci U S A. 2010 Apr 6;107(14):6477-81. doi: 10.1073/pnas.1000162107. Epub 2010 Mar 15.

34.

Bacterial community variation in human body habitats across space and time.

Costello EK, Lauber CL, Hamady M, Fierer N, Gordon JI, Knight R.

Science. 2009 Dec 18;326(5960):1694-7. doi: 10.1126/science.1177486. Epub 2009 Nov 5.

35.

Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale.

Lauber CL, Hamady M, Knight R, Fierer N.

Appl Environ Microbiol. 2009 Aug;75(15):5111-20. doi: 10.1128/AEM.00335-09. Epub 2009 Jun 5.

36.

Characterization of airborne microbial communities at a high-elevation site and their potential to act as atmospheric ice nuclei.

Bowers RM, Lauber CL, Wiedinmyer C, Hamady M, Hallar AG, Fall R, Knight R, Fierer N.

Appl Environ Microbiol. 2009 Aug;75(15):5121-30. doi: 10.1128/AEM.00447-09. Epub 2009 Jun 5.

37.

A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses.

Jones RT, Robeson MS, Lauber CL, Hamady M, Knight R, Fierer N.

ISME J. 2009 Apr;3(4):442-53. doi: 10.1038/ismej.2008.127. Epub 2009 Jan 8.

38.

The influence of sex, handedness, and washing on the diversity of hand surface bacteria.

Fierer N, Hamady M, Lauber CL, Knight R.

Proc Natl Acad Sci U S A. 2008 Nov 18;105(46):17994-9. doi: 10.1073/pnas.0807920105. Epub 2008 Nov 12.

39.

Stoichiometry of soil enzyme activity at global scale.

Sinsabaugh RL, Lauber CL, Weintraub MN, Ahmed B, Allison SD, Crenshaw C, Contosta AR, Cusack D, Frey S, Gallo ME, Gartner TB, Hobbie SE, Holland K, Keeler BL, Powers JS, Stursova M, Takacs-Vesbach C, Waldrop MP, Wallenstein MD, Zak DR, Zeglin LH.

Ecol Lett. 2008 Nov;11(11):1252-1264. doi: 10.1111/j.1461-0248.2008.01245.x. Epub 2008 Sep 25.

40.

Laccase gene composition and relative abundance in oak forest soil is not affected by short-term nitrogen fertilization.

Lauber CL, Sinsabaugh RL, Zak DR.

Microb Ecol. 2009 Jan;57(1):50-7. doi: 10.1007/s00248-008-9437-0. Epub 2008 Aug 29.

PMID:
18758844

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