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Items: 35

1.

A Generative Probabilistic Model and Discriminative Extensions for Brain Lesion Segmentation--With Application to Tumor and Stroke.

Menze BH, Van Leemput K, Lashkari D, Riklin-Raviv T, Geremia E, Alberts E, Gruber P, Wegener S, Weber MA, Szekely G, Ayache N, Golland P.

IEEE Trans Med Imaging. 2016 Apr;35(4):933-46. doi: 10.1109/TMI.2015.2502596. Epub 2015 Nov 20.

2.

The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS).

Menze BH, Jakab A, Bauer S, Kalpathy-Cramer J, Farahani K, Kirby J, Burren Y, Porz N, Slotboom J, Wiest R, Lanczi L, Gerstner E, Weber MA, Arbel T, Avants BB, Ayache N, Buendia P, Collins DL, Cordier N, Corso JJ, Criminisi A, Das T, Delingette H, Demiralp Ç, Durst CR, Dojat M, Doyle S, Festa J, Forbes F, Geremia E, Glocker B, Golland P, Guo X, Hamamci A, Iftekharuddin KM, Jena R, John NM, Konukoglu E, Lashkari D, Mariz JA, Meier R, Pereira S, Precup D, Price SJ, Raviv TR, Reza SM, Ryan M, Sarikaya D, Schwartz L, Shin HC, Shotton J, Silva CA, Sousa N, Subbanna NK, Szekely G, Taylor TJ, Thomas OM, Tustison NJ, Unal G, Vasseur F, Wintermark M, Ye DH, Zhao L, Zhao B, Zikic D, Prastawa M, Reyes M, Van Leemput K.

IEEE Trans Med Imaging. 2015 Oct;34(10):1993-2024. doi: 10.1109/TMI.2014.2377694. Epub 2014 Dec 4. Review.

3.

Decoupling function and anatomy in atlases of functional connectivity patterns: language mapping in tumor patients.

Langs G, Sweet A, Lashkari D, Tie Y, Rigolo L, Golby AJ, Golland P.

Neuroimage. 2014 Dec;103:462-475. doi: 10.1016/j.neuroimage.2014.08.029. Epub 2014 Aug 27.

4.

Data-driven functional clustering reveals dominance of face, place, and body selectivity in the ventral visual pathway.

Vul E, Lashkari D, Hsieh PJ, Golland P, Kanwisher N.

J Neurophysiol. 2012 Oct;108(8):2306-22. doi: 10.1152/jn.00354.2011. Epub 2012 Jun 27.

5.

Search for patterns of functional specificity in the brain: a nonparametric hierarchical Bayesian model for group fMRI data.

Lashkari D, Sridharan R, Vul E, Hsieh PJ, Kanwisher N, Golland P.

Neuroimage. 2012 Jan 16;59(2):1348-68. doi: 10.1016/j.neuroimage.2011.08.031. Epub 2011 Aug 22.

6.

Learning an atlas of a cognitive process in its functional geometry.

Langs G, Lashkari D, Sweet A, Tie Y, Rigolo L, Golby AJ, Golland P.

Inf Process Med Imaging. 2011;22:135-46.

7.

The organization of the human cerebral cortex estimated by intrinsic functional connectivity.

Yeo BT, Krienen FM, Sepulcre J, Sabuncu MR, Lashkari D, Hollinshead M, Roffman JL, Smoller JW, Zöllei L, Polimeni JR, Fischl B, Liu H, Buckner RL.

J Neurophysiol. 2011 Sep;106(3):1125-65. doi: 10.1152/jn.00338.2011. Epub 2011 Jun 8.

8.

A generative model for brain tumor segmentation in multi-modal images.

Menze BH, Van Leemput K, Lashkari D, Weber MA, Ayache N, Golland P.

Med Image Comput Comput Assist Interv. 2010;13(Pt 2):151-9.

9.

Detecting stable distributed patterns of brain activation using Gini contrast.

Langs G, Menze BH, Lashkari D, Golland P.

Neuroimage. 2011 May 15;56(2):497-507. doi: 10.1016/j.neuroimage.2010.07.074. Epub 2010 Aug 13.

10.

Nonparametric Hierarchical Bayesian Model for Functional Brain Parcellation.

Lashkari D, Sridharan R, Vul E, Hsieh PJ, Kanwisher N, Golland P.

Conf Comput Vis Pattern Recognit Workshops. 2010 Jun 13:15-22.

11.

Discovering structure in the space of fMRI selectivity profiles.

Lashkari D, Vul E, Kanwisher N, Golland P.

Neuroimage. 2010 Apr 15;50(3):1085-98. doi: 10.1016/j.neuroimage.2009.12.106. Epub 2010 Jan 4.

12.

Categories and Functional Units: An Infinite Hierarchical Model for Brain Activations.

Lashkari D, Sridharan R, Golland P.

Adv Neural Inf Process Syst. 2010 Jan 1;23:1252-1260.

13.

Exploratory fMRI analysis without spatial normalization.

Lashkari D, Golland P.

Inf Process Med Imaging. 2009;21:398-410.

14.

Discovering structure in the space of activation profiles in fMRI.

Lashkari D, Vul E, Kanwisher N, Golland P.

Med Image Comput Comput Assist Interv. 2008;11(Pt 1):1016-24.

15.

Spatial Patterns and Functional Profiles for Discovering Structure in fMRI Data.

Golland P, Lashkari D, Venkataraman A.

Conf Rec Asilomar Conf Signals Syst Comput. 2008 Oct;2008:1402-1409.

16.

Convex Clustering with Exemplar-Based Models.

Lashkari D, Golland P.

Adv Neural Inf Process Syst. 2007;20. pii: 3181.

17.

High-throughput genomic and proteomic analysis using microarray technology.

Huang JX, Mehrens D, Wiese R, Lee S, Tam SW, Daniel S, Gilmore J, Shi M, Lashkari D.

Clin Chem. 2001 Oct;47(10):1912-6.

18.

Systematic variation in gene expression patterns in human cancer cell lines.

Ross DT, Scherf U, Eisen MB, Perou CM, Rees C, Spellman P, Iyer V, Jeffrey SS, Van de Rijn M, Waltham M, Pergamenschikov A, Lee JC, Lashkari D, Shalon D, Myers TG, Weinstein JN, Botstein D, Brown PO.

Nat Genet. 2000 Mar;24(3):227-35.

PMID:
10700174
19.

Genome-wide mapping with biallelic markers in Arabidopsis thaliana.

Cho RJ, Mindrinos M, Richards DR, Sapolsky RJ, Anderson M, Drenkard E, Dewdney J, Reuber TL, Stammers M, Federspiel N, Theologis A, Yang WH, Hubbell E, Au M, Chung EY, Lashkari D, Lemieux B, Dean C, Lipshutz RJ, Ausubel FM, Davis RW, Oefner PJ.

Nat Genet. 1999 Oct;23(2):203-7.

PMID:
10508518
20.

A radiation hybrid map of the zebrafish genome.

Geisler R, Rauch GJ, Baier H, van Bebber F, Bross L, Dekens MP, Finger K, Fricke C, Gates MA, Geiger H, Geiger-Rudolph S, Gilmour D, Glaser S, Gnügge L, Habeck H, Hingst K, Holley S, Keenan J, Kirn A, Knaut H, Lashkari D, Maderspacher F, Martyn U, Neuhauss S, Neumann C, Nicolson T, Pelegri F, Ray R, Rick JM, Roehl H, Roeser T, Schauerte HE, Schier AF, Schönberger U, Schönthaler HB, Schulte-Merker S, Seydler C, Talbot WS, Weiler C, Nüsslein-Volhard C, Haffter P.

Nat Genet. 1999 Sep;23(1):86-9.

PMID:
10471505
21.

Distinctive gene expression patterns in human mammary epithelial cells and breast cancers.

Perou CM, Jeffrey SS, van de Rijn M, Rees CA, Eisen MB, Ross DT, Pergamenschikov A, Williams CF, Zhu SX, Lee JC, Lashkari D, Shalon D, Brown PO, Botstein D.

Proc Natl Acad Sci U S A. 1999 Aug 3;96(16):9212-7.

22.

A genetic linkage map for zebrafish: comparative analysis and localization of genes and expressed sequences.

Gates MA, Kim L, Egan ES, Cardozo T, Sirotkin HI, Dougan ST, Lashkari D, Abagyan R, Schier AF, Talbot WS.

Genome Res. 1999 Apr;9(4):334-47.

23.

The transcriptional program in the response of human fibroblasts to serum.

Iyer VR, Eisen MB, Ross DT, Schuler G, Moore T, Lee JC, Trent JM, Staudt LM, Hudson J Jr, Boguski MS, Lashkari D, Shalon D, Botstein D, Brown PO.

Science. 1999 Jan 1;283(5398):83-7.

24.

Mapping cloned sequences on YACs.

Agyare FD, Lagos G, Lashkari D, Davis RW, Lemieux B.

Methods Mol Biol. 1998;82:199-208. No abstract available.

PMID:
9664426
25.

Yeast microarrays for genome wide parallel genetic and gene expression analysis.

Lashkari DA, DeRisi JL, McCusker JH, Namath AF, Gentile C, Hwang SY, Brown PO, Davis RW.

Proc Natl Acad Sci U S A. 1997 Nov 25;94(24):13057-62.

26.
27.

The nucleotide sequence of Saccharomyces cerevisiae chromosome V.

Dietrich FS, Mulligan J, Hennessy K, Yelton MA, Allen E, Araujo R, Aviles E, Berno A, Brennan T, Carpenter J, Chen E, Cherry JM, Chung E, Duncan M, Guzman E, Hartzell G, Hunicke-Smith S, Hyman RW, Kayser A, Komp C, Lashkari D, Lew H, Lin D, Mosedale D, Davis RW, et al.

Nature. 1997 May 29;387(6632 Suppl):78-81.

28.

Mapping expressed sequence tag sites on yeast artificial chromosome clones of Arabidopsis thaliana DNA.

Agyare FD, Lashkari DA, Lagos A, Namath AF, Lagos G, Davis RW, Lemieux B.

Genome Res. 1997 Jan;7(1):1-9.

29.

Functional analysis of the genes of yeast chromosome V by genetic footprinting.

Smith V, Chou KN, Lashkari D, Botstein D, Brown PO.

Science. 1996 Dec 20;274(5295):2069-74.

PMID:
8953036
30.

Quantitative phenotypic analysis of yeast deletion mutants using a highly parallel molecular bar-coding strategy.

Shoemaker DD, Lashkari DA, Morris D, Mittmann M, Davis RW.

Nat Genet. 1996 Dec;14(4):450-6.

PMID:
8944025
31.

Use of a fluorescent-PCR reaction to detect genomic sequence copy number and transcriptional abundance.

Chiang PW, Song WJ, Wu KY, Korenberg JR, Fogel EJ, Van Keuren ML, Lashkari D, Kurnit DM.

Genome Res. 1996 Oct;6(10):1013-26.

32.

An automated multiplex oligonucleotide synthesizer: development of high-throughput, low-cost DNA synthesis.

Lashkari DA, Hunicke-Smith SP, Norgren RM, Davis RW, Brennan T.

Proc Natl Acad Sci U S A. 1995 Aug 15;92(17):7912-5.

33.

Ph.d. Education.

Firmenich A, Hays S, Kerr E, Lashkari D, Prohaska S.

Science. 1995 Jul 7;269(5220):16-7. No abstract available.

PMID:
17787679
34.

Sliding-plate gel caster.

Lashkari DA, Norgren RM, Davis RW.

Biotechniques. 1995 Apr;18(4):625-6. No abstract available.

PMID:
7598894
35.

Allelic diversification at the class II DQB locus of the mammalian major histocompatibility complex.

Gyllensten UB, Lashkari D, Erlich HA.

Proc Natl Acad Sci U S A. 1990 Mar;87(5):1835-9.

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