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Items: 50

1.

Genetic diversity and population divergences of an indigenous tree (Coffea mauritiana) in Reunion Island: role of climatic and geographical factors.

Garot E, Joët T, Combes MC, Lashermes P.

Heredity (Edinb). 2019 Jun;122(6):833-847. doi: 10.1038/s41437-018-0168-9. Epub 2018 Nov 26.

PMID:
30478354
2.

Integrative analysis of the late maturation programme and desiccation tolerance mechanisms in intermediate coffee seeds.

Dussert S, Serret J, Bastos-Siqueira A, Morcillo F, Déchamp E, Rofidal V, Lashermes P, Etienne H, JOët T.

J Exp Bot. 2018 Mar 24;69(7):1583-1597. doi: 10.1093/jxb/erx492.

3.

Protecting the origins of coffee to safeguard its future.

Mehrabi Z, Lashermes P.

Nat Plants. 2017 Jan 6;3:16209. doi: 10.1038/nplants.2016.209. No abstract available.

PMID:
28059074
4.

Inter-genomic DNA Exchanges and Homeologous Gene Silencing Shaped the Nascent Allopolyploid Coffee Genome (Coffea arabica L.).

Lashermes P, Hueber Y, Combes MC, Severac D, Dereeper A.

G3 (Bethesda). 2016 Sep 8;6(9):2937-48. doi: 10.1534/g3.116.030858.

5.

Gene coexpression network analysis of oil biosynthesis in an interspecific backcross of oil palm.

Guerin C, Joët T, Serret J, Lashermes P, Vaissayre V, Agbessi MD, Beulé T, Severac D, Amblard P, Tregear J, Durand-Gasselin T, Morcillo F, Dussert S.

Plant J. 2016 Sep;87(5):423-41. doi: 10.1111/tpj.13208. Epub 2016 Jul 19.

6.

Regulatory divergence between parental alleles determines gene expression patterns in hybrids.

Combes MC, Hueber Y, Dereeper A, Rialle S, Herrera JC, Lashermes P.

Genome Biol Evol. 2015 Mar 29;7(4):1110-21. doi: 10.1093/gbe/evv057.

7.

The coffee genome hub: a resource for coffee genomes.

Dereeper A, Bocs S, Rouard M, Guignon V, Ravel S, Tranchant-Dubreuil C, Poncet V, Garsmeur O, Lashermes P, Droc G.

Nucleic Acids Res. 2015 Jan;43(Database issue):D1028-35. doi: 10.1093/nar/gku1108. Epub 2014 Nov 11.

8.

The coffee genome provides insight into the convergent evolution of caffeine biosynthesis.

Denoeud F, Carretero-Paulet L, Dereeper A, Droc G, Guyot R, Pietrella M, Zheng C, Alberti A, Anthony F, Aprea G, Aury JM, Bento P, Bernard M, Bocs S, Campa C, Cenci A, Combes MC, Crouzillat D, Da Silva C, Daddiego L, De Bellis F, Dussert S, Garsmeur O, Gayraud T, Guignon V, Jahn K, Jamilloux V, Joët T, Labadie K, Lan T, Leclercq J, Lepelley M, Leroy T, Li LT, Librado P, Lopez L, Muñoz A, Noel B, Pallavicini A, Perrotta G, Poncet V, Pot D, Priyono, Rigoreau M, Rouard M, Rozas J, Tranchant-Dubreuil C, VanBuren R, Zhang Q, Andrade AC, Argout X, Bertrand B, de Kochko A, Graziosi G, Henry RJ, Jayarama, Ming R, Nagai C, Rounsley S, Sankoff D, Giuliano G, Albert VA, Wincker P, Lashermes P.

Science. 2014 Sep 5;345(6201):1181-4. doi: 10.1126/science.1255274. Epub 2014 Sep 4.

9.

Genome rearrangements derived from homoeologous recombination following allopolyploidy speciation in coffee.

Lashermes P, Combes MC, Hueber Y, Severac D, Dereeper A.

Plant J. 2014 May;78(4):674-85. doi: 10.1111/tpj.12505. Epub 2014 Apr 23.

10.

Regulation of galactomannan biosynthesis in coffee seeds.

Joët T, Laffargue A, Salmona J, Doulbeau S, Descroix F, Bertrand B, Lashermes P, Dussert S.

J Exp Bot. 2014 Jan;65(1):323-37. doi: 10.1093/jxb/ert380. Epub 2013 Nov 7.

PMID:
24203356
11.

SNiPloid: A Utility to Exploit High-Throughput SNP Data Derived from RNA-Seq in Allopolyploid Species.

Peralta M, Combes MC, Cenci A, Lashermes P, Dereeper A.

Int J Plant Genomics. 2013;2013:890123. doi: 10.1155/2013/890123. Epub 2013 Sep 12.

12.

Contribution of subgenomes to the transcriptome and their intertwined regulation in the allopolyploid Coffea arabica grown at contrasted temperatures.

Combes MC, Dereeper A, Severac D, Bertrand B, Lashermes P.

New Phytol. 2013 Oct;200(1):251-60. doi: 10.1111/nph.12371. Epub 2013 Jun 24.

13.

BAC-end sequences analysis provides first insights into coffee (Coffea canephora P.) genome composition and evolution.

Dereeper A, Guyot R, Tranchant-Dubreuil C, Anthony F, Argout X, de Bellis F, Combes MC, Gavory F, de Kochko A, Kudrna D, Leroy T, Poulain J, Rondeau M, Song X, Wing R, Lashermes P.

Plant Mol Biol. 2013 Oct;83(3):177-89. doi: 10.1007/s11103-013-0077-5. Epub 2013 May 25.

PMID:
23708951
14.

Differences in evolution rates among eudicotyledon species observed by analysis of protein divergence.

Cenci A, Combes MC, Lashermes P.

J Hered. 2013 Jul-Aug;104(4):459-64. doi: 10.1093/jhered/est025. Epub 2013 Apr 17.

PMID:
23596284
15.

High genetic and epigenetic stability in Coffea arabica plants derived from embryogenic suspensions and secondary embryogenesis as revealed by AFLP, MSAP and the phenotypic variation rate.

Bobadilla Landey R, Cenci A, Georget F, Bertrand B, Camayo G, Dechamp E, Herrera JC, Santoni S, Lashermes P, Simpson J, Etienne H.

PLoS One. 2013;8(2):e56372. doi: 10.1371/journal.pone.0056372. Epub 2013 Feb 13.

16.

Genome evolution in diploid and tetraploid Coffea species as revealed by comparative analysis of orthologous genome segments.

Cenci A, Combes MC, Lashermes P.

Plant Mol Biol. 2012 Jan;78(1-2):135-45. doi: 10.1007/s11103-011-9852-3. Epub 2011 Nov 16.

PMID:
22086332
17.

Homeologous gene expression in response to growing temperature in a recent Allopolyploid (Coffea arabica L.).

Combes MC, Cenci A, Baraille H, Bertrand B, Lashermes P.

J Hered. 2012 Jan-Feb;103(1):36-46. doi: 10.1093/jhered/esr120. Epub 2011 Oct 29.

PMID:
22039298
18.

Genomic expression dominance in the natural allopolyploid Coffea arabica is massively affected by growth temperature.

Bardil A, de Almeida JD, Combes MC, Lashermes P, Bertrand B.

New Phytol. 2011 Nov;192(3):760-74. doi: 10.1111/j.1469-8137.2011.03833.x. Epub 2011 Jul 28.

19.

Agrobacterium-mediated genetic transformation of Coffea arabica (L.) is greatly enhanced by using established embryogenic callus cultures.

Ribas AF, Dechamp E, Champion A, Bertrand B, Combes MC, Verdeil JL, Lapeyre F, Lashermes P, Etienne H.

BMC Plant Biol. 2011 May 19;11:92. doi: 10.1186/1471-2229-11-92.

20.

Organization and molecular evolution of a disease-resistance gene cluster in coffee trees.

Ribas AF, Cenci A, Combes MC, Etienne H, Lashermes P.

BMC Genomics. 2011 May 16;12:240. doi: 10.1186/1471-2164-12-240.

21.

Molecular characterization and functional analysis of the β-galactosidase gene during Coffea arabica (L.) fruit development.

Figueiredo SA, Lashermes P, Aragão FJ.

J Exp Bot. 2011 May;62(8):2691-703. doi: 10.1093/jxb/erq440. Epub 2011 Jan 14.

PMID:
21239378
22.

The 'PUCE CAFE' Project: the first 15K coffee microarray, a new tool for discovering candidate genes correlated to agronomic and quality traits.

Privat I, Bardil A, Gomez AB, Severac D, Dantec C, Fuentes I, Mueller L, Joët T, Pot D, Foucrier S, Dussert S, Leroy T, Journot L, de Kochko A, Campa C, Combes MC, Lashermes P, Bertrand B.

BMC Genomics. 2011 Jan 5;12:5. doi: 10.1186/1471-2164-12-5.

23.

Comparative sequence analyses indicate that Coffea (Asterids) and Vitis (Rosids) derive from the same paleo-hexaploid ancestral genome.

Cenci A, Combes MC, Lashermes P.

Mol Genet Genomics. 2010 May;283(5):493-501. doi: 10.1007/s00438-010-0534-7. Epub 2010 Apr 2.

PMID:
20361338
24.

Genotypic and environmental effects on coffee (Coffea arabica L.) bean fatty acid profile: impact on variety and origin chemometric determination.

Villarreal D, Laffargue A, Posada H, Bertrand B, Lashermes P, Dussert S.

J Agric Food Chem. 2009 Dec 9;57(23):11321-7. doi: 10.1021/jf902441n.

PMID:
19908899
25.

Stability across environments of the coffee variety near infrared spectral signature.

Posada H, Ferrand M, Davrieux F, Lashermes P, Bertrand B.

Heredity (Edinb). 2009 Feb;102(2):113-9. doi: 10.1038/hdy.2008.88. Epub 2008 Oct 29.

26.

Agrobacterium rhizogenes-transformed roots of coffee (Coffea arabica): conditions for long-term proliferation, and morphological and molecular characterization.

Alpizar E, Dechamp E, Lapeyre-Montes F, Guilhaumon C, Bertrand B, Jourdan C, Lashermes P, Etienne H.

Ann Bot. 2008 May;101(7):929-40. doi: 10.1093/aob/mcn027. Epub 2008 Mar 2.

27.

Comparison of the effectiveness of fatty acids, chlorogenic acids, and elements for the chemometric discrimination of coffee (Coffea arabica L.) varieties and growing origins.

Bertrand B, Villarreal D, Laffargue A, Posada H, Lashermes P, Dussert S.

J Agric Food Chem. 2008 Mar 26;56(6):2273-80. doi: 10.1021/jf073314f. Epub 2008 Feb 27.

PMID:
18303823
31.

Efficient production of Agrobacterium rhizogenes-transformed roots and composite plants for studying gene expression in coffee roots.

Alpizar E, Dechamp E, Espeout S, Royer M, Lecouls AC, Nicole M, Bertrand B, Lashermes P, Etienne H.

Plant Cell Rep. 2006 Sep;25(9):959-67. Epub 2006 Apr 5.

PMID:
16596429
32.

Construction and characterization of a Coffea canephora BAC library to study the organization of sucrose biosynthesis genes.

Leroy T, Marraccini P, Dufour M, Montagnon C, Lashermes P, Sabau X, Ferreira LP, Jourdan I, Pot D, Andrade AC, Glaszmann JC, Vieira LG, Piffanelli P.

Theor Appl Genet. 2005 Oct;111(6):1032-41. Epub 2005 Oct 11.

PMID:
16133319
33.

Factors influencing gene introgression into the allotetraploid Coffea arabica L. from its diploid relatives.

Herrera JC, Combes MC, Cortina H, Lashermes P.

Genome. 2004 Dec;47(6):1053-60.

PMID:
15644963
34.

Introgression molecular analysis of a leaf rust resistance gene from Coffea liberica into C. arabica L.

Prakash NS, Marques DV, Varzea VM, Silva MC, Combes MC, Lashermes P.

Theor Appl Genet. 2004 Oct;109(6):1311-7. Epub 2004 Jul 6.

PMID:
15241596
35.

Construction and characterisation of a BAC library for genome analysis of the allotetraploid coffee species (Coffea arabica L.).

Noir S, Patheyron S, Combes MC, Lashermes P, Chalhoub B.

Theor Appl Genet. 2004 Jun;109(1):225-30. Epub 2004 Mar 2.

PMID:
14997299
36.

Impact of the Coffea canephora gene introgression on beverage quality of C. arabica.

Bertrand B, Guyot B, Anthony F, Lashermes P.

Theor Appl Genet. 2003 Aug;107(3):387-94. Epub 2003 May 14.

PMID:
12750771
37.
38.

The origin of cultivated Coffea arabica L. varieties revealed by AFLP and SSR markers.

Anthony F, Combes C, Astorga C, Bertrand B, Graziosi G, Lashermes P.

Theor Appl Genet. 2002 Apr;104(5):894-900. Epub 2002 Feb 8.

PMID:
12582651
39.

Gene introgression into Coffea arabica by way of triploid hybrids (C. arabica x C. canephora).

Herrera JC, Combes MC, Cortina H, Alvarado G, Lashermes P.

Heredity (Edinb). 2002 Dec;89(6):488-94.

40.

Genetic linkage map of Coffea canephora: effect of segregation distortion and analysis of recombination rate in male and female meioses.

Lashermes P, Combes MC, Prakash NS, Trouslot P, Lorieux M, Charrier A.

Genome. 2001 Aug;44(4):589-96.

PMID:
11550892
41.

Origin, diversity and evolution of NBS-type disease-resistance gene homologues in coffee trees (Coffea L.).

Noir S, Combes MC, Anthony F, Lashermes P.

Mol Genet Genomics. 2001 Jun;265(4):654-62.

PMID:
11459185
42.

Characterization of microsatellite loci in Coffea arabica and related coffee species.

Combes MC, Andrzejewski S, Anthony F, Bertrand B, Rovelli P, Graziosi G, Lashermes P.

Mol Ecol. 2000 Aug;9(8):1178-80. No abstract available.

PMID:
10964241
43.

Single-locus inheritance in the allotetraploid Coffea arabica L. and interspecific hybrid C. arabica x C. canephora.

Lashermes P, Paczek V, Trouslot P, Combes MC, Couturon E, Charrier A.

J Hered. 2000 Jan-Feb;91(1):81-5.

PMID:
10739135
44.

Molecular characterisation and origin of the Coffea arabica L. genome.

Lashermes P, Combes MC, Robert J, Trouslot P, D'Hont A, Anthony F, Charrier A.

Mol Gen Genet. 1999 Mar;261(2):259-66.

PMID:
10102360
45.

Phylogenetic analysis of chloroplast DNA variation in Coffea L.

Cros J, Combes MC, Trouslot P, Anthony F, Hamon S, Charrier A, Lashermes P.

Mol Phylogenet Evol. 1998 Feb;9(1):109-17.

PMID:
9479700
46.

Inheritance and restriction fragment length polymorphism of chloroplast DNA in the genus Coffea L.

Lashermes P, Cros J, Combes MC, Trouslot P, Anthony F, Hamon S, Charrier A.

Theor Appl Genet. 1996 Sep;93(4):626-32. doi: 10.1007/BF00417958.

PMID:
24162358
47.

Inheritance and genetic mapping of self-incompatibility in Coffea canephora Pierre.

Lashermes P, Couturon E, Moreau N, Paillard M, Louarn J.

Theor Appl Genet. 1996 Aug;93(3):458-62. doi: 10.1007/BF00223190.

PMID:
24162305
48.

Construction of a molecular linkage map in coffee.

Paillard M, Lashermes P, Pétiard V.

Theor Appl Genet. 1996 Jul;93(1-2):41-7. doi: 10.1007/BF00225725.

PMID:
24162197
49.

Gynogenetic haploid plants analysis for agronomic and enzymatic markers in maize (Zea mays L.).

Lashermes P, Gaillard A, Beckert M.

Theor Appl Genet. 1988 Oct;76(4):570-2. doi: 10.1007/BF00260910.

PMID:
24232278
50.

Genetic control of maternal haploidy in maize (Zea mays L.) and selection of haploid inducing lines.

Lashermes P, Beckert M.

Theor Appl Genet. 1988 Sep;76(3):405-10. doi: 10.1007/BF00265341.

PMID:
24232205

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