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Items: 1 to 50 of 94

1.

Parental legacy, demography, and admixture influenced the evolution of the two subgenomes of the tetraploid Capsella bursa-pastoris (Brassicaceae).

Kryvokhyzha D, Salcedo A, Eriksson MC, Duan T, Tawari N, Chen J, Guerrina M, Kreiner JM, Kent TV, Lagercrantz U, Stinchcombe JR, Glémin S, Wright SI, Lascoux M.

PLoS Genet. 2019 Feb 15;15(2):e1007949. doi: 10.1371/journal.pgen.1007949. [Epub ahead of print]

2.

Modeling a trait-dependent diversification process coupled with molecular evolution on a random species tree.

Tahir D, Glémin S, Lascoux M, Kaj I.

J Theor Biol. 2019 Jan 14;461:189-203. doi: 10.1016/j.jtbi.2018.10.032. Epub 2018 Oct 16.

PMID:
30340056
3.

Convergent evolution of complex genomic rearrangements in two fungal meiotic drive elements.

Svedberg J, Hosseini S, Chen J, Vogan AA, Mozgova I, Hennig L, Manitchotpisit P, Abusharekh A, Hammond TM, Lascoux M, Johannesson H.

Nat Commun. 2018 Oct 12;9(1):4242. doi: 10.1038/s41467-018-06562-x.

4.

Homeologue-specific expression divergence in the recently formed tetraploid Capsella bursa-pastoris (Brassicaceae).

Huang HR, Liu JJ, Xu Y, Lascoux M, Ge XJ, Wright SI.

New Phytol. 2018 Oct;220(2):624-635. doi: 10.1111/nph.15299. Epub 2018 Jul 20.

PMID:
30028022
5.

Oak genome reveals facets of long lifespan.

Plomion C, Aury JM, Amselem J, Leroy T, Murat F, Duplessis S, Faye S, Francillonne N, Labadie K, Le Provost G, Lesur I, Bartholomé J, Faivre-Rampant P, Kohler A, Leplé JC, Chantret N, Chen J, Diévart A, Alaeitabar T, Barbe V, Belser C, Bergès H, Bodénès C, Bogeat-Triboulot MB, Bouffaud ML, Brachi B, Chancerel E, Cohen D, Couloux A, Da Silva C, Dossat C, Ehrenmann F, Gaspin C, Grima-Pettenati J, Guichoux E, Hecker A, Herrmann S, Hugueney P, Hummel I, Klopp C, Lalanne C, Lascoux M, Lasserre E, Lemainque A, Desprez-Loustau ML, Luyten I, Madoui MA, Mangenot S, Marchal C, Maumus F, Mercier J, Michotey C, Panaud O, Picault N, Rouhier N, Rué O, Rustenholz C, Salin F, Soler M, Tarkka M, Velt A, Zanne AE, Martin F, Wincker P, Quesneville H, Kremer A, Salse J.

Nat Plants. 2018 Jul;4(7):440-452. doi: 10.1038/s41477-018-0172-3. Epub 2018 Jun 18.

6.

Demographic expansion and genetic load of the halophyte model plant Eutrema salsugineum.

Wang XJ, Hu QJ, Guo XY, Wang K, Ru DF, German DA, Weretilnyk EA, Abbott RJ, Lascoux M, Liu JQ.

Mol Ecol. 2018 Jul;27(14):2943-2955. doi: 10.1111/mec.14738. Epub 2018 Jun 22.

PMID:
29862594
7.

Paternally expressed imprinted genes associate with hybridization barriers in Capsella.

Lafon-Placette C, Hatorangan MR, Steige KA, Cornille A, Lascoux M, Slotte T, Köhler C.

Nat Plants. 2018 Jun;4(6):352-357. doi: 10.1038/s41477-018-0161-6. Epub 2018 May 28.

PMID:
29808019
8.

From America to Eurasia: a multigenomes history of the genus Abies.

Semerikova SA, Khrunyk YY, Lascoux M, Semerikov VL.

Mol Phylogenet Evol. 2018 Aug;125:14-28. doi: 10.1016/j.ympev.2018.03.009. Epub 2018 Mar 15.

PMID:
29551520
9.

Competitive ability of Capsella species with different mating systems and ploidy levels.

Petrone Mendoza S, Lascoux M, Glémin S.

Ann Bot. 2018 May 11;121(6):1257-1264. doi: 10.1093/aob/mcy014.

PMID:
29471370
10.

Ancient polymorphisms and divergence hitchhiking contribute to genomic islands of divergence within a poplar species complex.

Ma T, Wang K, Hu Q, Xi Z, Wan D, Wang Q, Feng J, Jiang D, Ahani H, Abbott RJ, Lascoux M, Nevo E, Liu J.

Proc Natl Acad Sci U S A. 2018 Jan 9;115(2):E236-E243. doi: 10.1073/pnas.1713288114. Epub 2017 Dec 26.

11.

Using the Ornstein-Uhlenbeck process to model the evolution of interacting populations.

Bartoszek K, Glémin S, Kaj I, Lascoux M.

J Theor Biol. 2017 Sep 21;429:35-45. doi: 10.1016/j.jtbi.2017.06.011. Epub 2017 Jun 12.

12.

Genome sequencing and population genomic analyses provide insights into the adaptive landscape of silver birch.

Salojärvi J, Smolander OP, Nieminen K, Rajaraman S, Safronov O, Safdari P, Lamminmäki A, Immanen J, Lan T, Tanskanen J, Rastas P, Amiryousefi A, Jayaprakash B, Kammonen JI, Hagqvist R, Eswaran G, Ahonen VH, Serra JA, Asiegbu FO, de Dios Barajas-Lopez J, Blande D, Blokhina O, Blomster T, Broholm S, Brosché M, Cui F, Dardick C, Ehonen SE, Elomaa P, Escamez S, Fagerstedt KV, Fujii H, Gauthier A, Gollan PJ, Halimaa P, Heino PI, Himanen K, Hollender C, Kangasjärvi S, Kauppinen L, Kelleher CT, Kontunen-Soppela S, Koskinen JP, Kovalchuk A, Kärenlampi SO, Kärkönen AK, Lim KJ, Leppälä J, Macpherson L, Mikola J, Mouhu K, Mähönen AP, Niinemets Ü, Oksanen E, Overmyer K, Palva ET, Pazouki L, Pennanen V, Puhakainen T, Poczai P, Possen BJHM, Punkkinen M, Rahikainen MM, Rousi M, Ruonala R, van der Schoot C, Shapiguzov A, Sierla M, Sipilä TP, Sutela S, Teeri TH, Tervahauta AI, Vaattovaara A, Vahala J, Vetchinnikova L, Welling A, Wrzaczek M, Xu E, Paulin LG, Schulman AH, Lascoux M, Albert VA, Auvinen P, Helariutta Y, Kangasjärvi J.

Nat Genet. 2017 Jun;49(6):904-912. doi: 10.1038/ng.3862. Epub 2017 May 8.

PMID:
28481341
13.

Genetic Diversity and the Efficacy of Purifying Selection across Plant and Animal Species.

Chen J, Glémin S, Lascoux M.

Mol Biol Evol. 2017 Jun 1;34(6):1417-1428. doi: 10.1093/molbev/msx088.

PMID:
28333215
14.

Multispecies genetic structure and hybridization in the Betula genus across Eurasia.

Tsuda Y, Semerikov V, Sebastiani F, Vendramin GG, Lascoux M.

Mol Ecol. 2017 Jan;26(2):589-605. doi: 10.1111/mec.13885. Epub 2016 Dec 24.

PMID:
27763698
15.

Genomics: Geography matters for Arabidopsis.

Savolainen O, Lascoux M.

Nature. 2016 Sep 15;537(7620):314-315. doi: 10.1038/nature19466. Epub 2016 Sep 7. No abstract available.

PMID:
27602515
16.

Local Adaptation in European Firs Assessed through Extensive Sampling across Altitudinal Gradients in Southern Europe.

Brousseau L, Postolache D, Lascoux M, Drouzas AD, Källman T, Leonarduzzi C, Liepelt S, Piotti A, Popescu F, Roschanski AM, Zhelev P, Fady B, Vendramin GG.

PLoS One. 2016 Jul 8;11(7):e0158216. doi: 10.1371/journal.pone.0158216. eCollection 2016.

17.

Different Alleles of a Gene Encoding Leucoanthocyanidin Reductase (PaLAR3) Influence Resistance against the Fungus Heterobasidion parviporum in Picea abies.

Nemesio-Gorriz M, Hammerbacher A, Ihrmark K, Källman T, Olson Å, Lascoux M, Stenlid J, Gershenzon J, Elfstrand M.

Plant Physiol. 2016 Aug;171(4):2671-81. doi: 10.1104/pp.16.00685. Epub 2016 Jun 17.

18.

Identifying Genetic Signatures of Natural Selection Using Pooled Population Sequencing in Picea abies.

Chen J, Källman T, Ma XF, Zaina G, Morgante M, Lascoux M.

G3 (Bethesda). 2016 Jul 7;6(7):1979-89. doi: 10.1534/g3.116.028753.

19.

An informational transition in conditioned Markov chains: Applied to genetics and evolution.

Zhao L, Lascoux M, Waxman D.

J Theor Biol. 2016 Aug 7;402:158-70. doi: 10.1016/j.jtbi.2016.04.021. Epub 2016 Apr 19.

PMID:
27105672
20.

The extent and meaning of hybridization and introgression between Siberian spruce (Picea obovata) and Norway spruce (Picea abies): cryptic refugia as stepping stones to the west?

Tsuda Y, Chen J, Stocks M, Källman T, Sønstebø JH, Parducci L, Semerikov V, Sperisen C, Politov D, Ronkainen T, Väliranta M, Vendramin GG, Tollefsrud MM, Lascoux M.

Mol Ecol. 2016 Jun;25(12):2773-89. doi: 10.1111/mec.13654. Epub 2016 May 18.

PMID:
27087633
21.

Introgression maintains the genetic integrity of the mating-type determining chromosome of the fungus Neurospora tetrasperma.

Corcoran P, Anderson JL, Jacobson DJ, Sun Y, Ni P, Lascoux M, Johannesson H.

Genome Res. 2016 Apr;26(4):486-98. doi: 10.1101/gr.197244.115. Epub 2016 Feb 18.

22.

The influence of population structure on gene expression and flowering time variation in the ubiquitous weed Capsella bursa-pastoris (Brassicaceae).

Kryvokhyzha D, Holm K, Chen J, Cornille A, Glémin S, Wright SI, Lagercrantz U, Lascoux M.

Mol Ecol. 2016 Mar;25(5):1106-21. doi: 10.1111/mec.13537. Epub 2016 Feb 16.

PMID:
26797895
23.

Genomic signature of successful colonization of Eurasia by the allopolyploid shepherd's purse (Capsella bursa-pastoris).

Cornille A, Salcedo A, Kryvokhyzha D, Glémin S, Holm K, Wright SI, Lascoux M.

Mol Ecol. 2016 Jan;25(2):616-29. doi: 10.1111/mec.13491. Epub 2016 Jan 20.

PMID:
26607306
24.

Genetic and morphological evidence for introgression between three species of willows.

Fogelqvist J, Verkhozina AV, Katyshev AI, Pucholt P, Dixelius C, Rönnberg-Wästljung AC, Lascoux M, Berlin S.

BMC Evol Biol. 2015 Sep 16;15:193. doi: 10.1186/s12862-015-0461-7.

25.

Hybrid origins and the earliest stages of diploidization in the highly successful recent polyploid Capsella bursa-pastoris.

Douglas GM, Gos G, Steige KA, Salcedo A, Holm K, Josephs EB, Arunkumar R, Ågren JA, Hazzouri KM, Wang W, Platts AE, Williamson RJ, Neuffer B, Lascoux M, Slotte T, Wright SI.

Proc Natl Acad Sci U S A. 2015 Mar 3;112(9):2806-11. doi: 10.1073/pnas.1412277112. Epub 2015 Feb 17.

26.

Population structure and the rate of evolution.

Wei X, Zhao L, Lascoux M, Waxman D.

J Theor Biol. 2015 Jan 21;365:486-95. doi: 10.1016/j.jtbi.2014.10.041. Epub 2014 Nov 11.

PMID:
25451534
27.

Range shift and introgression of the rear and leading populations in two ecologically distinct Rubus species.

Mimura M, Mishima M, Lascoux M, Yahara T.

BMC Evol Biol. 2014 Oct 25;2014:209. doi: 10.1186/s12862-014-0209-9.

28.

Exact simulation of conditioned Wright-Fisher models.

Zhao L, Lascoux M, Waxman D.

J Theor Biol. 2014 Dec 21;363:419-26. doi: 10.1016/j.jtbi.2014.08.027. Epub 2014 Aug 28.

PMID:
25173081
29.

A Picea abies linkage map based on SNP markers identifies QTLs for four aspects of resistance to Heterobasidion parviporum infection.

Lind M, Källman T, Chen J, Ma XF, Bousquet J, Morgante M, Zaina G, Karlsson B, Elfstrand M, Lascoux M, Stenlid J.

PLoS One. 2014 Jul 18;9(7):e101049. doi: 10.1371/journal.pone.0101049. eCollection 2014.

30.

Amount of information needed for model choice in Approximate Bayesian Computation.

Stocks M, Siol M, Lascoux M, De Mita S.

PLoS One. 2014 Jun 24;9(6):e99581. doi: 10.1371/journal.pone.0099581. eCollection 2014.

31.

Investigating population history using temporal genetic differentiation.

Skoglund P, Sjödin P, Skoglund T, Lascoux M, Jakobsson M.

Mol Biol Evol. 2014 Sep;31(9):2516-27. doi: 10.1093/molbev/msu192. Epub 2014 Jun 17.

32.

A global multilocus analysis of the model fungus Neurospora reveals a single recent origin of a novel genetic system.

Corcoran P, Dettman JR, Sun Y, Luque EM, Corrochano LM, Taylor JW, Lascoux M, Johannesson H.

Mol Phylogenet Evol. 2014 Sep;78:136-47. doi: 10.1016/j.ympev.2014.05.007. Epub 2014 May 15.

PMID:
24845789
33.

Clinal variation at phenology-related genes in spruce: parallel evolution in FTL2 and Gigantea?

Chen J, Tsuda Y, Stocks M, Källman T, Xu N, Kärkkäinen K, Huotari T, Semerikov VL, Vendramin GG, Lascoux M.

Genetics. 2014 Jul;197(3):1025-38. doi: 10.1534/genetics.114.163063. Epub 2014 May 9.

34.

Patterns of nucleotide diversity at photoperiod related genes in Norway spruce [Picea abies (L.) Karst].

Källman T, De Mita S, Larsson H, Gyllenstrand N, Heuertz M, Parducci L, Suyama Y, Lagercrantz U, Lascoux M.

PLoS One. 2014 May 8;9(5):e95306. doi: 10.1371/journal.pone.0095306. eCollection 2014.

35.

High rates of gene flow by pollen and seed in oak populations across Europe.

Gerber S, Chadœuf J, Gugerli F, Lascoux M, Buiteveld J, Cottrell J, Dounavi A, Fineschi S, Forrest LL, Fogelqvist J, Goicoechea PG, Jensen JS, Salvini D, Vendramin GG, Kremer A.

PLoS One. 2014 Jan 13;9(1):e85130. doi: 10.1371/journal.pone.0085130. eCollection 2014. Erratum in: PLoS One. 2014;9(2):e91301.

36.

Genomic insights into salt adaptation in a desert poplar.

Ma T, Wang J, Zhou G, Yue Z, Hu Q, Chen Y, Liu B, Qiu Q, Wang Z, Zhang J, Wang K, Jiang D, Gou C, Yu L, Zhan D, Zhou R, Luo W, Ma H, Yang Y, Pan S, Fang D, Luo Y, Wang X, Wang G, Wang J, Wang Q, Lu X, Chen Z, Liu J, Lu Y, Yin Y, Yang H, Abbott RJ, Wu Y, Wan D, Li J, Yin T, Lascoux M, Difazio SP, Tuskan GA, Wang J, Liu J.

Nat Commun. 2013;4:2797. doi: 10.1038/ncomms3797. Erratum in: Nat Commun. 2014;5:3454. Jianquan, Liu [corrected to Liu, Jianquan].

PMID:
24256998
37.

Origin and demographic history of the endemic Taiwan spruce (Picea morrisonicola).

Bodare S, Stocks M, Yang JC, Lascoux M.

Ecol Evol. 2013 Sep;3(10):3320-33. doi: 10.1002/ece3.698. Epub 2013 Aug 15.

38.

Genetic structure and demographic history of the endangered tree species Dysoxylum malabaricum (Meliaceae) in Western Ghats, India: implications for conservation in a biodiversity hotspot.

Bodare S, Tsuda Y, Ravikanth G, Uma Shaanker R, Lascoux M.

Ecol Evol. 2013 Sep;3(10):3233-48. doi: 10.1002/ece3.669. Epub 2013 Aug 6.

39.

Ecological genomics of local adaptation.

Savolainen O, Lascoux M, Merilä J.

Nat Rev Genet. 2013 Nov;14(11):807-20. doi: 10.1038/nrg3522. Review.

PMID:
24136507
40.

Speciation of two desert poplar species triggered by Pleistocene climatic oscillations.

Wang J, Källman T, Liu J, Guo Q, Wu Y, Lin K, Lascoux M.

Heredity (Edinb). 2014 Feb;112(2):156-64. doi: 10.1038/hdy.2013.87. Epub 2013 Sep 25.

41.

Southern montane populations did not contribute to the recolonization of West Siberian Plain by Siberian larch (Larix sibirica): a range-wide analysis of cytoplasmic markers.

Semerikov VL, Semerikova SA, Polezhaeva MA, Kosintsev PA, Lascoux M.

Mol Ecol. 2013 Oct;22(19):4958-71. doi: 10.1111/mec.12433. Epub 2013 Aug 30.

PMID:
24033458
42.

The characteristic trajectory of a fixing allele: a consequence of fictitious selection that arises from conditioning.

Zhao L, Lascoux M, Overall AD, Waxman D.

Genetics. 2013 Nov;195(3):993-1006. doi: 10.1534/genetics.113.156059. Epub 2013 Sep 3.

43.

Rapidly evolving genes and stress adaptation of two desert poplars, Populus euphratica and P. pruinosa.

Zhang J, Xie P, Lascoux M, Meagher TR, Liu J.

PLoS One. 2013 Jun 11;8(6):e66370. doi: 10.1371/journal.pone.0066370. Print 2013.

44.

Distribution of long-range linkage disequilibrium and Tajima's D values in Scandinavian populations of Norway Spruce (Picea abies).

Larsson H, Källman T, Gyllenstrand N, Lascoux M.

G3 (Bethesda). 2013 May 20;3(5):795-806. doi: 10.1534/g3.112.005462.

45.

Sequencing of the needle transcriptome from Norway spruce (Picea abies Karst L.) reveals lower substitution rates, but similar selective constraints in gymnosperms and angiosperms.

Chen J, Uebbing S, Gyllenstrand N, Lagercrantz U, Lascoux M, Källman T.

BMC Genomics. 2012 Nov 2;13:589. doi: 10.1186/1471-2164-13-589.

46.

Impact of sampling schemes on demographic inference: an empirical study in two species with different mating systems and demographic histories.

St Onge KR, Palmé AE, Wright SI, Lascoux M.

G3 (Bethesda). 2012 Jul;2(7):803-14. doi: 10.1534/g3.112.002410. Epub 2012 Jul 1.

47.

Disentangling the roles of history and local selection in shaping clinal variation of allele frequencies and gene expression in Norway spruce (Picea abies).

Chen J, Källman T, Ma X, Gyllenstrand N, Zaina G, Morgante M, Bousquet J, Eckert A, Wegrzyn J, Neale D, Lagercrantz U, Lascoux M.

Genetics. 2012 Jul;191(3):865-81. doi: 10.1534/genetics.112.140749. Epub 2012 Apr 27.

48.

Flowering time and transcriptome variation in Capsella bursa-pastoris (Brassicaceae).

Huang HR, Yan PC, Lascoux M, Ge XJ.

New Phytol. 2012 May;194(3):676-89. doi: 10.1111/j.1469-8137.2012.04101.x. Epub 2012 Mar 12.

49.

Polymorphism and Divergence in Two Willow Species, Salix viminalis L. and Salix schwerinii E. Wolf.

Berlin S, Fogelqvist J, Lascoux M, Lagercrantz U, Rönnberg-Wästljung AC.

G3 (Bethesda). 2011 Oct;1(5):387-400. doi: 10.1534/g3.111.000539. Epub 2011 Oct 1.

50.

Population genetic evidence for complex evolutionary histories of four high altitude juniper species in the Qinghai-Tibetan Plateau.

Li Z, Zou J, Mao K, Lin K, Li H, Liu J, Källman T, Lascoux M.

Evolution. 2012 Mar;66(3):831-845. doi: 10.1111/j.1558-5646.2011.01466.x. Epub 2011 Dec 16.

PMID:
22380443

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