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Items: 20

1.

Erratum: Experimental strategies for imaging bioparticles with femtosecond hard X-ray pulses. Corrigendum.

Daurer BJ, Okamoto K, Bielecki J, Maia FRNC, Mühlig K, Seibert MM, Hantke MF, Nettelblad C, Benner WH, Svenda M, Tîmneanu N, Ekeberg T, Loh ND, Pietrini A, Zani A, Rath AD, Westphal D, Kirian RA, Awel S, Wiedorn MO, van der Schot G, Carlsson GH, Hasse D, Sellberg JA, Barty A, Andreasson J, Boutet S, Williams G, Koglin J, Andersson I, Hajdu J, Larsson DSD.

IUCrJ. 2019 Apr 9;6(Pt 3):500. doi: 10.1107/S2052252519004317. eCollection 2019 May 1.

2.

Electrospray sample injection for single-particle imaging with x-ray lasers.

Bielecki J, Hantke MF, Daurer BJ, Reddy HKN, Hasse D, Larsson DSD, Gunn LH, Svenda M, Munke A, Sellberg JA, Flueckiger L, Pietrini A, Nettelblad C, Lundholm I, Carlsson G, Okamoto K, Timneanu N, Westphal D, Kulyk O, Higashiura A, van der Schot G, Loh ND, Wysong TE, Bostedt C, Gorkhover T, Iwan B, Seibert MM, Osipov T, Walter P, Hart P, Bucher M, Ulmer A, Ray D, Carini G, Ferguson KR, Andersson I, Andreasson J, Hajdu J, Maia FRNC.

Sci Adv. 2019 May 3;5(5):eaav8801. doi: 10.1126/sciadv.aav8801. eCollection 2019 May.

3.

Rayleigh-scattering microscopy for tracking and sizing nanoparticles in focused aerosol beams.

Hantke MF, Bielecki J, Kulyk O, Westphal D, Larsson DSD, Svenda M, Reddy HKN, Kirian RA, Andreasson J, Hajdu J, Maia FRNC.

IUCrJ. 2018 Sep 11;5(Pt 6):673-680. doi: 10.1107/S2052252518010837. eCollection 2018 Nov 1.

4.

Considerations for three-dimensional image reconstruction from experimental data in coherent diffractive imaging.

Lundholm IV, Sellberg JA, Ekeberg T, Hantke MF, Okamoto K, van der Schot G, Andreasson J, Barty A, Bielecki J, Bruza P, Bucher M, Carron S, Daurer BJ, Ferguson K, Hasse D, Krzywinski J, Larsson DSD, Morgan A, Mühlig K, Müller M, Nettelblad C, Pietrini A, Reddy HKN, Rupp D, Sauppe M, Seibert M, Svenda M, Swiggers M, Timneanu N, Ulmer A, Westphal D, Williams G, Zani A, Faigel G, Chapman HN, Möller T, Bostedt C, Hajdu J, Gorkhover T, Maia FRNC.

IUCrJ. 2018 Sep 1;5(Pt 5):531-541. doi: 10.1107/S2052252518010047. eCollection 2018 Sep 1.

5.

Cryo-EM structure of a Marseilleviridae virus particle reveals a large internal microassembly.

Okamoto K, Miyazaki N, Reddy HKN, Hantke MF, Maia FRNC, Larsson DSD, Abergel C, Claverie JM, Hajdu J, Murata K, Svenda M.

Virology. 2018 Mar;516:239-245. doi: 10.1016/j.virol.2018.01.021.

6.

Coherent soft X-ray diffraction imaging of coliphage PR772 at the Linac coherent light source.

Reddy HKN, Yoon CH, Aquila A, Awel S, Ayyer K, Barty A, Berntsen P, Bielecki J, Bobkov S, Bucher M, Carini GA, Carron S, Chapman H, Daurer B, DeMirci H, Ekeberg T, Fromme P, Hajdu J, Hanke MF, Hart P, Hogue BG, Hosseinizadeh A, Kim Y, Kirian RA, Kurta RP, Larsson DSD, Duane Loh N, Maia FRNC, Mancuso AP, Mühlig K, Munke A, Nam D, Nettelblad C, Ourmazd A, Rose M, Schwander P, Seibert M, Sellberg JA, Song C, Spence JCH, Svenda M, Van der Schot G, Vartanyants IA, Williams GJ, Xavier PL.

Sci Data. 2017 Jun 27;4:170079. doi: 10.1038/sdata.2017.79.

7.

Experimental strategies for imaging bioparticles with femtosecond hard X-ray pulses.

Daurer BJ, Okamoto K, Bielecki J, Maia FRNC, Mühlig K, Seibert MM, Hantke MF, Nettelblad C, Benner WH, Svenda M, Tîmneanu N, Ekeberg T, Loh ND, Pietrini A, Zani A, Rath AD, Westphal D, Kirian RA, Awel S, Wiedorn MO, van der Schot G, Carlsson GH, Hasse D, Sellberg JA, Barty A, Andreasson J, Boutet S, Williams G, Koglin J, Andersson I, Hajdu J, Larsson DSD.

IUCrJ. 2017 Apr 7;4(Pt 3):251-262. doi: 10.1107/S2052252517003591. eCollection 2017 May 1. Erratum in: IUCrJ. 2019 Apr 09;6(Pt 3):500.

8.

The infectious particle of insect-borne totivirus-like Omono River virus has raised ridges and lacks fibre complexes.

Okamoto K, Miyazaki N, Larsson DS, Kobayashi D, Svenda M, Mühlig K, Maia FR, Gunn LH, Isawa H, Kobayashi M, Sawabe K, Murata K, Hajdu J.

Sci Rep. 2016 Sep 12;6:33170. doi: 10.1038/srep33170.

9.

A data set from flash X-ray imaging of carboxysomes.

Hantke MF, Hasse D, Ekeberg T, John K, Svenda M, Loh D, Martin AV, Timneanu N, Larsson DS, van der Schot G, Carlsson GH, Ingelman M, Andreasson J, Westphal D, Iwan B, Uetrecht C, Bielecki J, Liang M, Stellato F, DePonte DP, Bari S, Hartmann R, Kimmel N, Kirian RA, Seibert MM, Mühlig K, Schorb S, Ferguson K, Bostedt C, Carron S, Bozek JD, Rolles D, Rudenko A, Foucar L, Epp SW, Chapman HN, Barty A, Andersson I, Hajdu J, Maia FR.

Sci Data. 2016 Aug 1;3:160061. doi: 10.1038/sdata.2016.61.

10.

Open data set of live cyanobacterial cells imaged using an X-ray laser.

van der Schot G, Svenda M, Maia FR, Hantke MF, DePonte DP, Seibert MM, Aquila A, Schulz J, Kirian RA, Liang M, Stellato F, Bari S, Iwan B, Andreasson J, Timneanu N, Bielecki J, Westphal D, Nunes de Almeida F, Odić D, Hasse D, Carlsson GH, Larsson DS, Barty A, Martin AV, Schorb S, Bostedt C, Bozek JD, Carron S, Ferguson K, Rolles D, Rudenko A, Epp SW, Foucar L, Rudek B, Erk B, Hartmann R, Kimmel N, Holl P, Englert L, Loh ND, Chapman HN, Andersson I, Hajdu J, Ekeberg T.

Sci Data. 2016 Aug 1;3:160058. doi: 10.1038/sdata.2016.58.

11.

Coherent diffraction of single Rice Dwarf virus particles using hard X-rays at the Linac Coherent Light Source.

Munke A, Andreasson J, Aquila A, Awel S, Ayyer K, Barty A, Bean RJ, Berntsen P, Bielecki J, Boutet S, Bucher M, Chapman HN, Daurer BJ, DeMirci H, Elser V, Fromme P, Hajdu J, Hantke MF, Higashiura A, Hogue BG, Hosseinizadeh A, Kim Y, Kirian RA, Reddy HK, Lan TY, Larsson DS, Liu H, Loh ND, Maia FR, Mancuso AP, Mühlig K, Nakagawa A, Nam D, Nelson G, Nettelblad C, Okamoto K, Ourmazd A, Rose M, van der Schot G, Schwander P, Seibert MM, Sellberg JA, Sierra RG, Song C, Svenda M, Timneanu N, Vartanyants IA, Westphal D, Wiedorn MO, Williams GJ, Xavier PL, Yoon CH, Zook J.

Sci Data. 2016 Aug 1;3:160064. doi: 10.1038/sdata.2016.64.

12.

Imaging single cells in a beam of live cyanobacteria with an X-ray laser.

van der Schot G, Svenda M, Maia FR, Hantke M, DePonte DP, Seibert MM, Aquila A, Schulz J, Kirian R, Liang M, Stellato F, Iwan B, Andreasson J, Timneanu N, Westphal D, Almeida FN, Odic D, Hasse D, Carlsson GH, Larsson DS, Barty A, Martin AV, Schorb S, Bostedt C, Bozek JD, Rolles D, Rudenko A, Epp S, Foucar L, Rudek B, Hartmann R, Kimmel N, Holl P, Englert L, Duane Loh NT, Chapman HN, Andersson I, Hajdu J, Ekeberg T.

Nat Commun. 2015 Feb 11;6:5704. doi: 10.1038/ncomms6704.

PMID:
25669616
13.

Screening for the Location of RNA using the Chloride Ion Distribution in Simulations of Virus Capsids.

Larsson DS, van der Spoel D.

J Chem Theory Comput. 2012 Jul 10;8(7):2474-83. doi: 10.1021/ct3002128. Epub 2012 Jun 26.

PMID:
26588976
14.

Virus capsid dissolution studied by microsecond molecular dynamics simulations.

Larsson DS, Liljas L, van der Spoel D.

PLoS Comput Biol. 2012;8(5):e1002502. doi: 10.1371/journal.pcbi.1002502. Epub 2012 May 10.

15.

Coherent diffraction of a single virus particle: the impact of a water layer on the available orientational information.

Wang F, Weckert E, Ziaja B, Larsson DS, van der Spoel D.

Phys Rev E Stat Nonlin Soft Matter Phys. 2011 Mar;83(3 Pt 1):031907. Epub 2011 Mar 15.

PMID:
21517525
16.

Trajectory NG: portable, compressed, general molecular dynamics trajectories.

Spångberg D, Larsson DS, van der Spoel D.

J Mol Model. 2011 Oct;17(10):2669-85. doi: 10.1007/s00894-010-0948-5. Epub 2011 Jan 26.

PMID:
21267752
17.

Proteins, lipids, and water in the gas phase.

van der Spoel D, Marklund EG, Larsson DS, Caleman C.

Macromol Biosci. 2011 Jan 10;11(1):50-9. doi: 10.1002/mabi.201000291. Review.

PMID:
21136535
18.

Molecular dynamics simulations of a membrane protein-micelle complex in vacuo.

Friemann R, Larsson DS, Wang Y, van der Spoel D.

J Am Chem Soc. 2009 Nov 25;131(46):16606-7. doi: 10.1021/ja902962y.

PMID:
19877613
19.

Structural stability of electrosprayed proteins: temperature and hydration effects.

Marklund EG, Larsson DS, van der Spoel D, Patriksson A, Caleman C.

Phys Chem Chem Phys. 2009 Sep 28;11(36):8069-78. doi: 10.1039/b903846a. Epub 2009 Aug 14.

PMID:
19727514
20.

Encapsulation of myoglobin in a cetyl trimethylammonium bromide micelle in vacuo: a simulation study.

Wang Y, Larsson DS, van der Spoel D.

Biochemistry. 2009 Feb 10;48(5):1006-15. doi: 10.1021/bi801952f.

PMID:
19154126

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