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Items: 18

1.

Heterochromatin-Enriched Assemblies Reveal the Sequence and Organization of the Drosophila melanogaster Y Chromosome.

Chang CH, Larracuente AM.

Genetics. 2018 Nov 12. pii: genetics.301765.2018. doi: 10.1534/genetics.118.301765. [Epub ahead of print]

2.

Firefly genomes illuminate parallel origins of bioluminescence in beetles.

Fallon TR, Lower SE, Chang CH, Bessho-Uehara M, Martin GJ, Bewick AJ, Behringer M, Debat HJ, Wong I, Day JC, Suvorov A, Silva CJ, Stanger-Hall KF, Hall DW, Schmitz RJ, Nelson DR, Lewis SM, Shigenobu S, Bybee SM, Larracuente AM, Oba Y, Weng JK.

Elife. 2018 Oct 16;7. pii: e36495. doi: 10.7554/eLife.36495.

3.

Single-molecule sequencing resolves the detailed structure of complex satellite DNA loci in Drosophila melanogaster.

Khost DE, Eickbush DG, Larracuente AM.

Genome Res. 2017 May;27(5):709-721. doi: 10.1101/gr.213512.116. Epub 2017 Apr 3.

4.

Genomic changes following the reversal of a Y chromosome to an autosome in Drosophila pseudoobscura.

Chang CH, Larracuente AM.

Evolution. 2017 May;71(5):1285-1296. doi: 10.1111/evo.13229. Epub 2017 Apr 10.

5.

Host-Symbiont Interactions: Male-Killers Exposed.

Larracuente AM, Meller VH.

Curr Biol. 2016 May 23;26(10):R429-31. doi: 10.1016/j.cub.2016.03.057.

6.

The Ecology and Evolutionary Dynamics of Meiotic Drive.

Lindholm AK, Dyer KA, Firman RC, Fishman L, Forstmeier W, Holman L, Johannesson H, Knief U, Kokko H, Larracuente AM, Manser A, Montchamp-Moreau C, Petrosyan VG, Pomiankowski A, Presgraves DC, Safronova LD, Sutter A, Unckless RL, Verspoor RL, Wedell N, Wilkinson GS, Price TAR.

Trends Ecol Evol. 2016 Apr;31(4):315-326. doi: 10.1016/j.tree.2016.02.001. Epub 2016 Feb 23. Review.

PMID:
26920473
7.

Genetics on the Fly: A Primer on the Drosophila Model System.

Hales KG, Korey CA, Larracuente AM, Roberts DM.

Genetics. 2015 Nov;201(3):815-42. doi: 10.1534/genetics.115.183392.

8.

Origin, evolution, and population genetics of the selfish Segregation Distorter gene duplication in European and African populations of Drosophila melanogaster.

Brand CL, Larracuente AM, Presgraves DC.

Evolution. 2015 May;69(5):1271-83. doi: 10.1111/evo.12658. Epub 2015 Apr 29.

PMID:
25828399
9.

Simple method for fluorescence DNA in situ hybridization to squashed chromosomes.

Larracuente AM, Ferree PM.

J Vis Exp. 2015 Jan 6;(95):52288. doi: 10.3791/52288.

10.

Sex-ratio meiotic drive and Y-linked resistance in Drosophila affinis.

Unckless RL, Larracuente AM, Clark AG.

Genetics. 2015 Mar;199(3):831-40. doi: 10.1534/genetics.114.173948. Epub 2015 Jan 8.

12.

Recent selection on the Y-to-dot translocation in Drosophila pseudoobscura.

Larracuente AM, Clark AG.

Mol Biol Evol. 2014 Apr;31(4):846-56. doi: 10.1093/molbev/msu002. Epub 2014 Jan 3.

13.

Surprising differences in the variability of Y chromosomes in African and cosmopolitan populations of Drosophila melanogaster.

Larracuente AM, Clark AG.

Genetics. 2013 Jan;193(1):201-14. doi: 10.1534/genetics.112.146167. Epub 2012 Oct 19.

14.

The selfish Segregation Distorter gene complex of Drosophila melanogaster.

Larracuente AM, Presgraves DC.

Genetics. 2012 Sep;192(1):33-53. doi: 10.1534/genetics.112.141390. Review.

15.

Translocation of Y-linked genes to the dot chromosome in Drosophila pseudoobscura.

Larracuente AM, Noor MA, Clark AG.

Mol Biol Evol. 2010 Jul;27(7):1612-20. doi: 10.1093/molbev/msq045. Epub 2010 Feb 10.

16.

Evolution of protein-coding genes in Drosophila.

Larracuente AM, Sackton TB, Greenberg AJ, Wong A, Singh ND, Sturgill D, Zhang Y, Oliver B, Clark AG.

Trends Genet. 2008 Mar;24(3):114-23. doi: 10.1016/j.tig.2007.12.001. Epub 2008 Feb 4.

PMID:
18249460
17.

Contrasting the efficacy of selection on the X and autosomes in Drosophila.

Singh ND, Larracuente AM, Clark AG.

Mol Biol Evol. 2008 Feb;25(2):454-67. Epub 2007 Dec 13.

PMID:
18083702
18.

Evolution of genes and genomes on the Drosophila phylogeny.

Drosophila 12 Genomes Consortium, Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artieri CG, Barbash DA, Barker D, Barsanti P, Batterham P, Batzoglou S, Begun D, Bhutkar A, Blanco E, Bosak SA, Bradley RK, Brand AD, Brent MR, Brooks AN, Brown RH, Butlin RK, Caggese C, Calvi BR, Bernardo de Carvalho A, Caspi A, Castrezana S, Celniker SE, Chang JL, Chapple C, Chatterji S, Chinwalla A, Civetta A, Clifton SW, Comeron JM, Costello JC, Coyne JA, Daub J, David RG, Delcher AL, Delehaunty K, Do CB, Ebling H, Edwards K, Eickbush T, Evans JD, Filipski A, Findeiss S, Freyhult E, Fulton L, Fulton R, Garcia AC, Gardiner A, Garfield DA, Garvin BE, Gibson G, Gilbert D, Gnerre S, Godfrey J, Good R, Gotea V, Gravely B, Greenberg AJ, Griffiths-Jones S, Gross S, Guigo R, Gustafson EA, Haerty W, Hahn MW, Halligan DL, Halpern AL, Halter GM, Han MV, Heger A, Hillier L, Hinrichs AS, Holmes I, Hoskins RA, Hubisz MJ, Hultmark D, Huntley MA, Jaffe DB, Jagadeeshan S, Jeck WR, Johnson J, Jones CD, Jordan WC, Karpen GH, Kataoka E, Keightley PD, Kheradpour P, Kirkness EF, Koerich LB, Kristiansen K, Kudrna D, Kulathinal RJ, Kumar S, Kwok R, Lander E, Langley CH, Lapoint R, Lazzaro BP, Lee SJ, Levesque L, Li R, Lin CF, Lin MF, Lindblad-Toh K, Llopart A, Long M, Low L, Lozovsky E, Lu J, Luo M, Machado CA, Makalowski W, Marzo M, Matsuda M, Matzkin L, McAllister B, McBride CS, McKernan B, McKernan K, Mendez-Lago M, Minx P, Mollenhauer MU, Montooth K, Mount SM, Mu X, Myers E, Negre B, Newfeld S, Nielsen R, Noor MA, O'Grady P, Pachter L, Papaceit M, Parisi MJ, Parisi M, Parts L, Pedersen JS, Pesole G, Phillippy AM, Ponting CP, Pop M, Porcelli D, Powell JR, Prohaska S, Pruitt K, Puig M, Quesneville H, Ram KR, Rand D, Rasmussen MD, Reed LK, Reenan R, Reily A, Remington KA, Rieger TT, Ritchie MG, Robin C, Rogers YH, Rohde C, Rozas J, Rubenfield MJ, Ruiz A, Russo S, Salzberg SL, Sanchez-Gracia A, Saranga DJ, Sato H, Schaeffer SW, Schatz MC, Schlenke T, Schwartz R, Segarra C, Singh RS, Sirot L, Sirota M, Sisneros NB, Smith CD, Smith TF, Spieth J, Stage DE, Stark A, Stephan W, Strausberg RL, Strempel S, Sturgill D, Sutton G, Sutton GG, Tao W, Teichmann S, Tobari YN, Tomimura Y, Tsolas JM, Valente VL, Venter E, Venter JC, Vicario S, Vieira FG, Vilella AJ, Villasante A, Walenz B, Wang J, Wasserman M, Watts T, Wilson D, Wilson RK, Wing RA, Wolfner MF, Wong A, Wong GK, Wu CI, Wu G, Yamamoto D, Yang HP, Yang SP, Yorke JA, Yoshida K, Zdobnov E, Zhang P, Zhang Y, Zimin AV, Baldwin J, Abdouelleil A, Abdulkadir J, Abebe A, Abera B, Abreu J, Acer SC, Aftuck L, Alexander A, An P, Anderson E, Anderson S, Arachi H, Azer M, Bachantsang P, Barry A, Bayul T, Berlin A, Bessette D, Bloom T, Blye J, Boguslavskiy L, Bonnet C, Boukhgalter B, Bourzgui I, Brown A, Cahill P, Channer S, Cheshatsang Y, Chuda L, Citroen M, Collymore A, Cooke P, Costello M, D'Aco K, Daza R, De Haan G, DeGray S, DeMaso C, Dhargay N, Dooley K, Dooley E, Doricent M, Dorje P, Dorjee K, Dupes A, Elong R, Falk J, Farina A, Faro S, Ferguson D, Fisher S, Foley CD, Franke A, Friedrich D, Gadbois L, Gearin G, Gearin CR, Giannoukos G, Goode T, Graham J, Grandbois E, Grewal S, Gyaltsen K, Hafez N, Hagos B, Hall J, Henson C, Hollinger A, Honan T, Huard MD, Hughes L, Hurhula B, Husby ME, Kamat A, Kanga B, Kashin S, Khazanovich D, Kisner P, Lance K, Lara M, Lee W, Lennon N, Letendre F, LeVine R, Lipovsky A, Liu X, Liu J, Liu S, Lokyitsang T, Lokyitsang Y, Lubonja R, Lui A, MacDonald P, Magnisalis V, Maru K, Matthews C, McCusker W, McDonough S, Mehta T, Meldrim J, Meneus L, Mihai O, Mihalev A, Mihova T, Mittelman R, Mlenga V, Montmayeur A, Mulrain L, Navidi A, Naylor J, Negash T, Nguyen T, Nguyen N, Nicol R, Norbu C, Norbu N, Novod N, O'Neill B, Osman S, Markiewicz E, Oyono OL, Patti C, Phunkhang P, Pierre F, Priest M, Raghuraman S, Rege F, Reyes R, Rise C, Rogov P, Ross K, Ryan E, Settipalli S, Shea T, Sherpa N, Shi L, Shih D, Sparrow T, Spaulding J, Stalker J, Stange-Thomann N, Stavropoulos S, Stone C, Strader C, Tesfaye S, Thomson T, Thoulutsang Y, Thoulutsang D, Topham K, Topping I, Tsamla T, Vassiliev H, Vo A, Wangchuk T, Wangdi T, Weiand M, Wilkinson J, Wilson A, Yadav S, Young G, Yu Q, Zembek L, Zhong D, Zimmer A, Zwirko Z, Jaffe DB, Alvarez P, Brockman W, Butler J, Chin C, Gnerre S, Grabherr M, Kleber M, Mauceli E, MacCallum I.

Nature. 2007 Nov 8;450(7167):203-18.

PMID:
17994087

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