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Items: 34

1.

Colonization Habitat Controls Biomass, Composition, and Metabolic Activity of Attached Microbial Communities in the Columbia River Hyporheic Corridor.

Stern N, Ginder-Vogel M, Stegen JC, Arntzen E, Kennedy DW, Larget BR, Roden EE.

Appl Environ Microbiol. 2017 Aug 1;83(16). pii: e00260-17. doi: 10.1128/AEM.00260-17. Print 2017 Aug 15.

2.

BayesCAT: Bayesian co-estimation of alignment and tree.

Shim H, Larget B.

Biometrics. 2018 Mar;74(1):270-279. doi: 10.1111/biom.12640. Epub 2017 Jan 18.

PMID:
28099991
3.

A novel statistical method for behaviour sequence analysis and its application to birdsong.

Alger SJ, Larget BR, Riters LV.

Anim Behav. 2016 Jun;116:181-193. Epub 2016 May 13.

4.

Subclonal diversity arises early even in small colorectal tumours and contributes to differential growth fates.

Sievers CK, Zou LS, Pickhardt PJ, Matkowskyj KA, Albrecht DM, Clipson L, Bacher JW, Pooler BD, Moawad FJ, Cash BD, Reichelderfer M, Vo TN, Newton MA, Larget BR, Halberg RB.

Gut. 2017 Dec;66(12):2132-2140. doi: 10.1136/gutjnl-2016-312232. Epub 2016 Sep 8.

5.

Statistical evidence for common ancestry: Application to primates.

Baum DA, Ané C, Larget B, Solís-Lemus C, Ho LS, Boone P, Drummond CP, Bontrager M, Hunter SJ, Saucier W.

Evolution. 2016 Jun;70(6):1354-63. doi: 10.1111/evo.12934. Epub 2016 May 30.

PMID:
27139421
6.

Exploring Tree-Like and Non-Tree-Like Patterns Using Genome Sequences: An Example Using the Inbreeding Plant Species Arabidopsis thaliana (L.) Heynh.

Stenz NW, Larget B, Baum DA, Ané C.

Syst Biol. 2015 Sep;64(5):809-23. doi: 10.1093/sysbio/syv039. Epub 2015 Jun 27.

PMID:
26117705
7.

Xenorhabdus bovienii Strain Diversity Impacts Coevolution and Symbiotic Maintenance with Steinernema spp. Nematode Hosts.

Murfin KE, Lee MM, Klassen JL, McDonald BR, Larget B, Forst S, Stock SP, Currie CR, Goodrich-Blair H.

MBio. 2015 Jun 4;6(3):e00076. doi: 10.1128/mBio.00076-15.

8.

Testing for beneficial reversal of dominance during salinity shifts in the invasive copepod Eurytemora affinis, and implications for the maintenance of genetic variation.

Posavi M, Gelembiuk GW, Larget B, Lee CE.

Evolution. 2014 Nov;68(11):3166-83. doi: 10.1111/evo.12502. Epub 2014 Oct 2. Erratum in: Evolution. 2015 Mar;69(3):856.

PMID:
25135455
9.

Bayesian estimation of the phylogeography of African gorillas with genome-differentiated population trees.

Kim J, Larget B.

Biometrics. 2014 Sep;70(3):683-94. doi: 10.1111/biom.12169. Epub 2014 Apr 18.

PMID:
24750097
10.

The estimation of tree posterior probabilities using conditional clade probability distributions.

Larget B.

Syst Biol. 2013 Jul;62(4):501-11. doi: 10.1093/sysbio/syt014. Epub 2013 Mar 11.

11.

MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space.

Ronquist F, Teslenko M, van der Mark P, Ayres DL, Darling A, Höhna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP.

Syst Biol. 2012 May;61(3):539-42. doi: 10.1093/sysbio/sys029. Epub 2012 Feb 22.

12.

An assessment of transgenomics as a tool for identifying genes involved in the evolutionary differentiation of closely related plant species.

Correa R, Stanga J, Larget B, Roznowski A, Shu G, Dilkes B, Baum DA.

New Phytol. 2012 Jan;193(2):494-503. doi: 10.1111/j.1469-8137.2011.03949.x. Epub 2011 Nov 11.

13.

Specificity in the symbiotic association between fungus-growing ants and protective Pseudonocardia bacteria.

Cafaro MJ, Poulsen M, Little AE, Price SL, Gerardo NM, Wong B, Stuart AE, Larget B, Abbot P, Currie CR.

Proc Biol Sci. 2011 Jun 22;278(1713):1814-22. doi: 10.1098/rspb.2010.2118. Epub 2010 Nov 24.

14.

BUCKy: gene tree/species tree reconciliation with Bayesian concordance analysis.

Larget BR, Kotha SK, Dewey CN, Ané C.

Bioinformatics. 2010 Nov 15;26(22):2910-1. doi: 10.1093/bioinformatics/btq539. Epub 2010 Sep 21.

PMID:
20861028
15.

Effect of dietary crude protein on ammonia-N emission measured by herd nitrogen mass balance in a freestall dairy barn managed under farm-like conditions.

Aguerre MJ, Wattiaux MA, Hunt T, Larget BR.

Animal. 2010 Aug;4(8):1390-400. doi: 10.1017/S1751731110000248.

PMID:
22444659
16.

Fine-scale phylogenetic discordance across the house mouse genome.

White MA, Ané C, Dewey CN, Larget BR, Payseur BA.

PLoS Genet. 2009 Nov;5(11):e1000729. doi: 10.1371/journal.pgen.1000729. Epub 2009 Nov 20.

17.

High genetic diversity, phenotypic uniformity, and evidence of outcrossing in sclerotinia sclerotiorum in the columbia basin of washington state.

Atallah ZK, Larget B, Chen X, Johnson DA.

Phytopathology. 2004 Jul;94(7):737-42. doi: 10.1094/PHYTO.2004.94.7.737.

18.

A Bayesian perspective on a non-parsimonious parsimony model.

Huelsenbeck JP, Ané C, Larget B, Ronquist F.

Syst Biol. 2008 Jun;57(3):406-19. doi: 10.1080/10635150802166046.

PMID:
18570035
19.

Efficiency of Markov chain Monte Carlo tree proposals in Bayesian phylogenetics.

Lakner C, van der Mark P, Huelsenbeck JP, Larget B, Ronquist F.

Syst Biol. 2008 Feb;57(1):86-103. doi: 10.1080/10635150801886156.

PMID:
18278678
20.

A Bayesian model of AFLP marker evolution and phylogenetic inference.

Luo R, Hipp AL, Larget B.

Stat Appl Genet Mol Biol. 2007;6:Article11. Epub 2007 Apr 17.

PMID:
17474877
21.

Bayesian estimation of concordance among gene trees.

Ané C, Larget B, Baum DA, Smith SD, Rokas A.

Mol Biol Evol. 2007 Feb;24(2):412-26. Epub 2006 Nov 9. Erratum in: Mol Biol Evol. 2007 Jul;24(7):1575.

PMID:
17095535
22.
23.

Comment on "Phylogenetic MCMC algorithms are misleading on mixtures of trees".

Ronquist F, Larget B, Huelsenbeck JP, Kadane JB, Simon D, van der Mark P.

Science. 2006 Apr 21;312(5772):367; author reply 367.

24.

Hastings ratio of the LOCAL proposal used in Bayesian phylogenetics.

Holder MT, Lewis PO, Swofford DL, Larget B.

Syst Biol. 2005 Dec;54(6):961-5. No abstract available.

PMID:
16385776
25.

A Bayesian approach to the estimation of ancestral genome arrangements.

Larget B, Kadane JB, Simon DL.

Mol Phylogenet Evol. 2005 Aug;36(2):214-23.

PMID:
15893477
26.

A bayesian analysis of metazoan mitochondrial genome arrangements.

Larget B, Simon DL, Kadane JB, Sweet D.

Mol Biol Evol. 2005 Mar;22(3):486-95. Epub 2004 Nov 3. Erratum in: Mol Biol Evol. 2005 Apr;22(4):1157.

PMID:
15525697
27.

Integration of microbial ecology and statistics: a test to compare gene libraries.

Schloss PD, Larget BR, Handelsman J.

Appl Environ Microbiol. 2004 Sep;70(9):5485-92.

28.

Bayesian phylogenetic model selection using reversible jump Markov chain Monte Carlo.

Huelsenbeck JP, Larget B, Alfaro ME.

Mol Biol Evol. 2004 Jun;21(6):1123-33. Epub 2004 Mar 19.

PMID:
15034130
29.

Potential applications and pitfalls of Bayesian inference of phylogeny.

Huelsenbeck JP, Larget B, Miller RE, Ronquist F.

Syst Biol. 2002 Oct;51(5):673-88. Review.

PMID:
12396583
30.

Statistical analysis of DOE EML QAP data from 1982 to 1998.

Mizanur Rahman GM, Isenhour TL, Larget B, Greenlaw PD.

J Chem Inf Comput Sci. 2001 Sep-Oct;41(5):1099-105.

PMID:
11604010
31.

Bayesian phylogenetic inference via Markov chain Monte Carlo methods.

Mau B, Newton MA, Larget B.

Biometrics. 1999 Mar;55(1):1-12.

PMID:
11318142
32.

A Bayesian framework for the analysis of cospeciation.

Huelsenbeck JP, Rannala B, Larget B.

Evolution. 2000 Apr;54(2):352-64.

PMID:
10937213
33.

A compound poisson process for relaxing the molecular clock.

Huelsenbeck JP, Larget B, Swofford D.

Genetics. 2000 Apr;154(4):1879-92.

34.

[Klinefelter's disease in 2 monozygotic twins. Clinical and biological study].

Klotz HP, Boiffin A, Mignot J, Larget B, Lelievre H.

Ann Endocrinol (Paris). 1969 Jan-Feb;30(1):86-95. French. No abstract available.

PMID:
5774463

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