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Items: 1 to 50 of 89

1.

Current and Promising Approaches to Identify Horizontal Gene Transfer Events in Metagenomes.

Douglas GM, Langille MGI.

Genome Biol Evol. 2019 Oct 1;11(10):2750-2766. doi: 10.1093/gbe/evz184.

2.

Metagenomic Functional Shifts to Plant Induced Environmental Changes.

Yurgel SN, Nearing JT, Douglas GM, Langille MGI.

Front Microbiol. 2019 Jul 26;10:1682. doi: 10.3389/fmicb.2019.01682. eCollection 2019.

3.

Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.

Bolyen E, Rideout JR, Dillon MR, Bokulich NA, Abnet CC, Al-Ghalith GA, Alexander H, Alm EJ, Arumugam M, Asnicar F, Bai Y, Bisanz JE, Bittinger K, Brejnrod A, Brislawn CJ, Brown CT, Callahan BJ, Caraballo-Rodríguez AM, Chase J, Cope EK, Da Silva R, Diener C, Dorrestein PC, Douglas GM, Durall DM, Duvallet C, Edwardson CF, Ernst M, Estaki M, Fouquier J, Gauglitz JM, Gibbons SM, Gibson DL, Gonzalez A, Gorlick K, Guo J, Hillmann B, Holmes S, Holste H, Huttenhower C, Huttley GA, Janssen S, Jarmusch AK, Jiang L, Kaehler BD, Kang KB, Keefe CR, Keim P, Kelley ST, Knights D, Koester I, Kosciolek T, Kreps J, Langille MGI, Lee J, Ley R, Liu YX, Loftfield E, Lozupone C, Maher M, Marotz C, Martin BD, McDonald D, McIver LJ, Melnik AV, Metcalf JL, Morgan SC, Morton JT, Naimey AT, Navas-Molina JA, Nothias LF, Orchanian SB, Pearson T, Peoples SL, Petras D, Preuss ML, Pruesse E, Rasmussen LB, Rivers A, Robeson MS 2nd, Rosenthal P, Segata N, Shaffer M, Shiffer A, Sinha R, Song SJ, Spear JR, Swafford AD, Thompson LR, Torres PJ, Trinh P, Tripathi A, Turnbaugh PJ, Ul-Hasan S, van der Hooft JJJ, Vargas F, Vázquez-Baeza Y, Vogtmann E, von Hippel M, Walters W, Wan Y, Wang M, Warren J, Weber KC, Williamson CHD, Willis AD, Xu ZZ, Zaneveld JR, Zhang Y, Zhu Q, Knight R, Caporaso JG.

Nat Biotechnol. 2019 Sep;37(9):1091. doi: 10.1038/s41587-019-0252-6.

PMID:
31399723
4.

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.

Bolyen E, Rideout JR, Dillon MR, Bokulich NA, Abnet CC, Al-Ghalith GA, Alexander H, Alm EJ, Arumugam M, Asnicar F, Bai Y, Bisanz JE, Bittinger K, Brejnrod A, Brislawn CJ, Brown CT, Callahan BJ, Caraballo-Rodríguez AM, Chase J, Cope EK, Da Silva R, Diener C, Dorrestein PC, Douglas GM, Durall DM, Duvallet C, Edwardson CF, Ernst M, Estaki M, Fouquier J, Gauglitz JM, Gibbons SM, Gibson DL, Gonzalez A, Gorlick K, Guo J, Hillmann B, Holmes S, Holste H, Huttenhower C, Huttley GA, Janssen S, Jarmusch AK, Jiang L, Kaehler BD, Kang KB, Keefe CR, Keim P, Kelley ST, Knights D, Koester I, Kosciolek T, Kreps J, Langille MGI, Lee J, Ley R, Liu YX, Loftfield E, Lozupone C, Maher M, Marotz C, Martin BD, McDonald D, McIver LJ, Melnik AV, Metcalf JL, Morgan SC, Morton JT, Naimey AT, Navas-Molina JA, Nothias LF, Orchanian SB, Pearson T, Peoples SL, Petras D, Preuss ML, Pruesse E, Rasmussen LB, Rivers A, Robeson MS 2nd, Rosenthal P, Segata N, Shaffer M, Shiffer A, Sinha R, Song SJ, Spear JR, Swafford AD, Thompson LR, Torres PJ, Trinh P, Tripathi A, Turnbaugh PJ, Ul-Hasan S, van der Hooft JJJ, Vargas F, Vázquez-Baeza Y, Vogtmann E, von Hippel M, Walters W, Wan Y, Wang M, Warren J, Weber KC, Williamson CHD, Willis AD, Xu ZZ, Zaneveld JR, Zhang Y, Zhu Q, Knight R, Caporaso JG.

Nat Biotechnol. 2019 Aug;37(8):852-857. doi: 10.1038/s41587-019-0209-9. No abstract available. Erratum in: Nat Biotechnol. 2019 Sep;37(9):1091.

PMID:
31341288
5.

Pediatric Multiple Sclerosis: A Review.

Langille MM, Rutatangwa A, Francisco C.

Adv Pediatr. 2019 Aug;66:209-229. doi: 10.1016/j.yapd.2019.03.003. Epub 2019 Apr 20. Review. No abstract available.

PMID:
31230695
6.

Oligoclonal bands increase the specificity of MRI criteria to predict multiple sclerosis in children with radiologically isolated syndrome.

Makhani N, Lebrun C, Siva A, Narula S, Wassmer E, Brassat D, Brenton JN, Cabre P, Carra Dallière C, de Seze J, Durand Dubief F, Inglese M, Langille M, Mathey G, Neuteboom RF, Pelletier J, Pohl D, Reich DS, Ignacio Rojas J, Shabanova V, Shapiro ED, Stone RT, Tenembaum S, Tintoré M, Uygunoglu U, Vargas W, Venkateswaren S, Vermersch P, Kantarci O, Okuda DT, Pelletier D; Observatoire Francophone de la Sclérose en Plaques (OFSEP), Société Francophone de la Sclérose en Plaques (SFSEP), the Radiologically Isolated Syndrome Consortium (RISC) and the Pediatric Radiologically Isolated Syndrome Consortium (PARIS).

Mult Scler J Exp Transl Clin. 2019 Mar 20;5(1):2055217319836664. doi: 10.1177/2055217319836664. eCollection 2019 Jan-Mar.

7.

Drivers of Regional Bacterial Community Structure and Diversity in the Northwest Atlantic Ocean.

Zorz J, Willis C, Comeau AM, Langille MGI, Johnson CL, Li WKW, LaRoche J.

Front Microbiol. 2019 Feb 21;10:281. doi: 10.3389/fmicb.2019.00281. eCollection 2019.

8.

Infectious Complications Are Associated With Alterations in the Gut Microbiome in Pediatric Patients With Acute Lymphoblastic Leukemia.

Nearing JT, Connors J, Whitehouse S, Van Limbergen J, Macdonald T, Kulkarni K, Langille MGI.

Front Cell Infect Microbiol. 2019 Feb 19;9:28. doi: 10.3389/fcimb.2019.00028. eCollection 2019.

9.

Enhancement of the gut barrier integrity by a microbial metabolite through the Nrf2 pathway.

Singh R, Chandrashekharappa S, Bodduluri SR, Baby BV, Hegde B, Kotla NG, Hiwale AA, Saiyed T, Patel P, Vijay-Kumar M, Langille MGI, Douglas GM, Cheng X, Rouchka EC, Waigel SJ, Dryden GW, Alatassi H, Zhang HG, Haribabu B, Vemula PK, Jala VR.

Nat Commun. 2019 Jan 9;10(1):89. doi: 10.1038/s41467-018-07859-7.

10.

Predicting the Functional Potential of the Microbiome from Marker Genes Using PICRUSt.

Douglas GM, Beiko RG, Langille MGI.

Methods Mol Biol. 2018;1849:169-177. doi: 10.1007/978-1-4939-8728-3_11.

PMID:
30298254
11.

Processing a 16S rRNA Sequencing Dataset with the Microbiome Helper Workflow.

Douglas GM, Comeau AM, Langille MGI.

Methods Mol Biol. 2018;1849:131-141. doi: 10.1007/978-1-4939-8728-3_9.

PMID:
30298252
12.

The Phosphate Binder Ferric Citrate Alters the Gut Microbiome in Rats with Chronic Kidney Disease.

Lau WL, Vaziri ND, Nunes ACF, Comeau AM, Langille MGI, England W, Khazaeli M, Suematsu Y, Phan J, Whiteson K.

J Pharmacol Exp Ther. 2018 Dec;367(3):452-460. doi: 10.1124/jpet.118.251389. Epub 2018 Oct 4.

13.

The impact of chemerin or chemokine-like receptor 1 loss on the mouse gut microbiome.

Dranse HJ, Zheng A, Comeau AM, Langille MGI, Zabel BA, Sinal CJ.

PeerJ. 2018 Sep 12;6:e5494. doi: 10.7717/peerj.5494. eCollection 2018.

14.

Selective sensitivity of the gut microbiome to iron chelators in polybacterial abdominal sepsis.

Dickson K, Liu S, Zhou J, Langille M, Holbein BE, Lehmann C.

Med Hypotheses. 2018 Nov;120:68-71. doi: 10.1016/j.mehy.2018.08.018. Epub 2018 Aug 24.

PMID:
30220344
15.

Denoising the Denoisers: an independent evaluation of microbiome sequence error-correction approaches.

Nearing JT, Douglas GM, Comeau AM, Langille MGI.

PeerJ. 2018 Aug 8;6:e5364. doi: 10.7717/peerj.5364. eCollection 2018.

16.

Differences in adiposity and diet quality among individuals with inflammatory bowel disease in Eastern Canada.

DeClercq V, Langille MGI, Van Limbergen J.

PLoS One. 2018 Jul 19;13(7):e0200580. doi: 10.1371/journal.pone.0200580. eCollection 2018.

17.

Dissecting Community Structure in Wild Blueberry Root and Soil Microbiome.

Yurgel SN, Douglas GM, Dusault A, Percival D, Langille MGI.

Front Microbiol. 2018 Jun 6;9:1187. doi: 10.3389/fmicb.2018.01187. eCollection 2018.

18.

Exploring Linkages between Taxonomic and Functional Profiles of the Human Microbiome.

Langille MGI.

mSystems. 2018 Mar 27;3(2). pii: e00163-17. doi: 10.1128/mSystems.00163-17. eCollection 2018 Mar-Apr.

19.

Multi-omics differentially classify disease state and treatment outcome in pediatric Crohn's disease.

Douglas GM, Hansen R, Jones CMA, Dunn KA, Comeau AM, Bielawski JP, Tayler R, El-Omar EM, Russell RK, Hold GL, Langille MGI, Van Limbergen J.

Microbiome. 2018 Jan 15;6(1):13. doi: 10.1186/s40168-018-0398-3.

20.

"Available upon request": not good enough for microbiome data!

Langille MGI, Ravel J, Fricke WF.

Microbiome. 2018 Jan 10;6(1):8. doi: 10.1186/s40168-017-0394-z. No abstract available.

21.

Taxonomic differences of gut microbiomes drive cellulolytic enzymatic potential within hind-gut fermenting mammals.

Finlayson-Trick ECL, Getz LJ, Slaine PD, Thornbury M, Lamoureux E, Cook J, Langille MGI, Murray LE, McCormick C, Rohde JR, Cheng Z.

PLoS One. 2017 Dec 27;12(12):e0189404. doi: 10.1371/journal.pone.0189404. eCollection 2017.

22.

Radiologically isolated syndrome in children: Clinical and radiologic outcomes.

Makhani N, Lebrun C, Siva A, Brassat D, Carra Dallière C, de Seze J, Du W, Durand Dubief F, Kantarci O, Langille M, Narula S, Pelletier J, Rojas JI, Shapiro ED, Stone RT, Tintoré M, Uygunoglu U, Vermersch P, Wassmer E, Okuda DT, Pelletier D.

Neurol Neuroimmunol Neuroinflamm. 2017 Sep 25;4(6):e395. doi: 10.1212/NXI.0000000000000395. eCollection 2017 Nov.

23.

Moderate Exercise Has Limited but Distinguishable Effects on the Mouse Microbiome.

Lamoureux EV, Grandy SA, Langille MGI.

mSystems. 2017 Aug 22;2(4). pii: e00006-17. doi: 10.1128/mSystems.00006-17. eCollection 2017 Jul-Aug.

24.

The Impact of Exclusive Enteral Nutrition (EEN) on the Gut Microbiome in Crohn's Disease: A Review.

MacLellan A, Moore-Connors J, Grant S, Cahill L, Langille MGI, Van Limbergen J.

Nutrients. 2017 May 1;9(5). pii: E0447. doi: 10.3390/nu9050447. Review.

25.

Microbiome Helper: a Custom and Streamlined Workflow for Microbiome Research.

Comeau AM, Douglas GM, Langille MG.

mSystems. 2017 Jan 3;2(1). pii: e00127-16. doi: 10.1128/mSystems.00127-16. eCollection 2017 Jan-Feb.

26.

Discovery of an expanded set of avian leucosis subgroup E proviruses in chickens using Vermillion, a novel sequence capture and analysis pipeline.

Rutherford K, Meehan CJ, Langille MG, Tyack SG, McKay JC, McLean NL, Benkel K, Beiko RG, Benkel B.

Poult Sci. 2016 Oct 19. pii: pew404. [Epub ahead of print] No abstract available.

PMID:
27765872
27.

Genomic Analysis of a Serotype 5 Streptococcus pneumoniae Outbreak in British Columbia, Canada, 2005-2009.

Miller RR, Langille MG, Montoya V, Crisan A, Stefanovic A, Martin I, Hoang L, Patrick DM, Romney M, Tyrrell G, Jones SJ, Brinkman FS, Tang P.

Can J Infect Dis Med Microbiol. 2016;2016:5381871. doi: 10.1155/2016/5381871. Epub 2016 Apr 14.

28.

Discovery of an expanded set of avian leukosis subroup E proviruses in chickens using Vermillion, a novel sequence capture and analysis pipeline.

Rutherford K, Meehan CJ, Langille MG, Tyack SG, McKay JC, McLean NL, Benkel K, Beiko RG, Benkel B.

Poult Sci. 2016 Oct 1;95(10):2250-8. doi: 10.3382/ps/pew194. Epub 2016 Jun 27. Erratum in: Poult Sci. 2016 Oct 19;:.

PMID:
27354549
29.

Clinical Characteristics of Pediatric-Onset and Adult-Onset Multiple Sclerosis in Hispanic Americans.

Langille MM, Islam T, Burnett M, Amezcua L.

J Child Neurol. 2016 Jul;31(8):1068-73. doi: 10.1177/0883073816638754. Epub 2016 Mar 28.

PMID:
27021143
30.

Static Facial Slings: Approaches to Rehabilitation of the Paralyzed Face.

Langille M, Singh P.

Facial Plast Surg Clin North Am. 2016 Feb;24(1):29-35. doi: 10.1016/j.fsc.2015.09.007. Review.

PMID:
26611699
31.

Multisystem involvement in neuromyelitis optica.

Langille MM, Desai J.

Ann Indian Acad Neurol. 2015 Sep;18(Suppl 1):S56-8. doi: 10.4103/0972-2327.164830.

32.

Frailty and the Microbiome.

Meehan CJ, Langille MG, Beiko RG.

Interdiscip Top Gerontol Geriatr. 2015;41:54-65. doi: 10.1159/000381162. Epub 2015 Jul 17. Review.

PMID:
26301979
33.

GenomeD3Plot: a library for rich, interactive visualizations of genomic data in web applications.

Laird MR, Langille MG, Brinkman FS.

Bioinformatics. 2015 Oct 15;31(20):3348-9. doi: 10.1093/bioinformatics/btv376. Epub 2015 Jun 20.

34.

Encephalitis due to antibodies to voltage gated potassium channel (VGKC) with cerebellar involvement in a teenager.

Langille MM, Desai J.

Ann Indian Acad Neurol. 2015 Apr-Jun;18(2):238-9. doi: 10.4103/0972-2327.150623.

35.

IslandViewer 3: more flexible, interactive genomic island discovery, visualization and analysis.

Dhillon BK, Laird MR, Shay JA, Winsor GL, Lo R, Nizam F, Pereira SK, Waglechner N, McArthur AG, Langille MG, Brinkman FS.

Nucleic Acids Res. 2015 Jul 1;43(W1):W104-8. doi: 10.1093/nar/gkv401. Epub 2015 Apr 27.

36.

Fecal microbes, short chain fatty acids, and colorectal cancer across racial/ethnic groups.

Hester CM, Jala VR, Langille MG, Umar S, Greiner KA, Haribabu B.

World J Gastroenterol. 2015 Mar 7;21(9):2759-69. doi: 10.3748/wjg.v21.i9.2759.

37.

Microbial shifts in the aging mouse gut.

Langille MG, Meehan CJ, Koenig JE, Dhanani AS, Rose RA, Howlett SE, Beiko RG.

Microbiome. 2014 Dec 5;2(1):50. doi: 10.1186/s40168-014-0050-9. eCollection 2014.

38.

Which is more important for classifying microbial communities: who's there or what they can do?

Xu Z, Malmer D, Langille MG, Way SF, Knight R.

ISME J. 2014 Dec;8(12):2357-9. doi: 10.1038/ismej.2014.157. Epub 2014 Aug 29. No abstract available.

39.

TSH signaling pathways that regulate MCP-1 in human differentiated adipocytes.

Gagnon A, Langille ML, Chaker S, Antunes TT, Durand J, Sorisky A.

Metabolism. 2014 Jun;63(6):812-21. doi: 10.1016/j.metabol.2014.02.015. Epub 2014 Mar 2.

PMID:
24661543
40.

Plasmon-mediated syntheses of metallic nanostructures.

Langille MR, Personick ML, Mirkin CA.

Angew Chem Int Ed Engl. 2013 Dec 23;52(52):13910-40. doi: 10.1002/anie.201301875. Epub 2013 Nov 26.

PMID:
24281910
41.

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences.

Langille MG, Zaneveld J, Caporaso JG, McDonald D, Knights D, Reyes JA, Clemente JC, Burkepile DE, Vega Thurber RL, Knight R, Beiko RG, Huttenhower C.

Nat Biotechnol. 2013 Sep;31(9):814-21. doi: 10.1038/nbt.2676. Epub 2013 Aug 25.

42.

GenGIS 2: geospatial analysis of traditional and genetic biodiversity, with new gradient algorithms and an extensible plugin framework.

Parks DH, Mankowski T, Zangooei S, Porter MS, Armanini DG, Baird DJ, Langille MG, Beiko RG.

PLoS One. 2013 Jul 29;8(7):e69885. doi: 10.1371/journal.pone.0069885. Print 2013.

43.

Interactions in the microbiome: communities of organisms and communities of genes.

Boon E, Meehan CJ, Whidden C, Wong DH, Langille MG, Beiko RG.

FEMS Microbiol Rev. 2014 Jan;38(1):90-118. doi: 10.1111/1574-6976.12035. Epub 2013 Aug 28. Review.

44.

IslandViewer update: Improved genomic island discovery and visualization.

Dhillon BK, Chiu TA, Laird MR, Langille MG, Brinkman FS.

Nucleic Acids Res. 2013 Jul;41(Web Server issue):W129-32. doi: 10.1093/nar/gkt394. Epub 2013 May 15.

45.

Synthesis of gold hexagonal bipyramids directed by planar-twinned silver triangular nanoprisms.

Personick ML, Langille MR, Wu J, Mirkin CA.

J Am Chem Soc. 2013 Mar 13;135(10):3800-3. doi: 10.1021/ja400794q. Epub 2013 Mar 1.

PMID:
23452138
46.

Plasmon-mediated synthesis of silver cubes with unusual twinning structures using short wavelength excitation.

Personick ML, Langille MR, Zhang J, Wu J, Li S, Mirkin CA.

Small. 2013 Jun 10;9(11):1947-53. doi: 10.1002/smll.201202451. Epub 2013 Jan 6.

PMID:
23292747
47.

Chemically isolating hot spots on concave nanocubes.

Rycenga M, Langille MR, Personick ML, Ozel T, Mirkin CA.

Nano Lett. 2012 Dec 12;12(12):6218-22. doi: 10.1021/nl3032235. Epub 2012 Nov 8.

PMID:
23136925
48.

Correlating the structure and localized surface plasmon resonance of single silver right bipyramids.

Ringe E, Zhang J, Langille MR, Mirkin CA, Marks LD, Van Duyne RP.

Nanotechnology. 2012 Nov 9;23(44):444005. doi: 10.1088/0957-4484/23/44/444005. Epub 2012 Oct 18.

PMID:
23080080
49.

Sifting through genomes with iterative-sequence clustering produces a large, phylogenetically diverse protein-family resource.

Sharpton TJ, Jospin G, Wu D, Langille MG, Pollard KS, Eisen JA.

BMC Bioinformatics. 2012 Oct 13;13:264. doi: 10.1186/1471-2105-13-264.

50.

Functional biogeography of ocean microbes revealed through non-negative matrix factorization.

Jiang X, Langille MG, Neches RY, Elliot M, Levin SA, Eisen JA, Weitz JS, Dushoff J.

PLoS One. 2012;7(9):e43866. doi: 10.1371/journal.pone.0043866. Epub 2012 Sep 18.

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