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Paralog dependency indirectly affects the robustness of human cells.

Dandage R, Landry CR.

Mol Syst Biol. 2019 Sep;15(9):e8871. doi: 10.15252/msb.20198871.


Spontaneous whole-genome duplication restores fertility in interspecific hybrids.

Charron G, Marsit S, Hénault M, Martin H, Landry CR.

Nat Commun. 2019 Sep 11;10(1):4126. doi: 10.1038/s41467-019-12041-8.


The role of structural pleiotropy and regulatory evolution in the retention of heteromers of paralogs.

Marchant A, Cisneros AF, Dubé AK, Gagnon-Arsenault I, Ascencio D, Jain H, Aubé S, Eberlein C, Evans-Yamamoto D, Yachie N, Landry CR.

Elife. 2019 Aug 27;8. pii: e46754. doi: 10.7554/eLife.46754.


Differences Between the Raw Material and the Products of de Novo Gene Birth Can Result from Mutational Biases.

Nielly-Thibault L, Landry CR.

Genetics. 2019 Aug;212(4):1353-1366. doi: 10.1534/genetics.119.302187. Epub 2019 Jun 21.


Turnover of ribosome-associated transcripts from de novo ORFs produces gene-like characteristics available for de novo gene emergence in wild yeast populations.

Durand É, Gagnon-Arsenault I, Hallin J, Hatin I, Dubé AK, Nielly-Thibault L, Namy O, Landry CR.

Genome Res. 2019 Jun;29(6):932-943. doi: 10.1101/gr.239822.118. Epub 2019 May 31.


Author Correction: Hybridization is a recurrent evolutionary stimulus in wild yeast speciation.

Eberlein C, Hénault M, Fijarczyk A, Charron G, Bouvier M, Kohn LM, Anderson JB, Landry CR.

Nat Commun. 2019 May 13;10(1):2199. doi: 10.1038/s41467-019-09702-z.


PatcherBot: a single-cell electrophysiology robot for adherent cells and brain slices.

Kolb I, Landry CR, Yip MC, Lewallen CF, Stoy WA, Lee J, Felouzis A, Yang B, Boyden ES, Rozell CJ, Forest CR.

J Neural Eng. 2019 Aug;16(4):046003. doi: 10.1088/1741-2552/ab1834. Epub 2019 Apr 10.


beditor: A Computational Workflow for Designing Libraries of Guide RNAs for CRISPR-Mediated Base Editing.

Dandage R, Després PC, Yachie N, Landry CR.

Genetics. 2019 Jun;212(2):377-385. doi: 10.1534/genetics.119.302089. Epub 2019 Apr 1.


Hybridization is a recurrent evolutionary stimulus in wild yeast speciation.

Eberlein C, Hénault M, Fijarczyk A, Charron G, Bouvier M, Kohn LM, Anderson JB, Landry CR.

Nat Commun. 2019 Feb 25;10(1):923. doi: 10.1038/s41467-019-08809-7. Erratum in: Nat Commun. 2019 May 13;10(1):2199.


A collection of barcoded natural isolates of Saccharomyces paradoxus to study microbial evolutionary ecology.

Bleuven C, Dubé AK, Nguyen GQ, Gagnon-Arsenault I, Martin H, Landry CR.

Microbiologyopen. 2018 Dec 19:e773. doi: 10.1002/mbo3.773. [Epub ahead of print]


A systems biology approach to explore the impact of maple tree dormancy release on sap variation and maple syrup quality.

N'guyen GQ, Martin N, Jain M, Lagacé L, Landry CR, Filteau M.

Sci Rep. 2018 Oct 2;8(1):14658. doi: 10.1038/s41598-018-32940-y.


Double Selection Enhances the Efficiency of Target-AID and Cas9-Based Genome Editing in Yeast.

Després PC, Dubé AK, Nielly-Thibault L, Yachie N, Landry CR.

G3 (Bethesda). 2018 Oct 3;8(10):3163-3171. doi: 10.1534/g3.118.200461.


Direct Phosphorylation of SRC Homology 3 Domains by Tyrosine Kinase Receptors Disassembles Ligand-Induced Signaling Networks.

Dionne U, Chartier FJM, López de Los Santos Y, Lavoie N, Bernard DN, Banerjee SL, Otis F, Jacquet K, Tremblay MG, Jain M, Bourassa S, Gish GD, Gagné JP, Poirier GG, Laprise P, Voyer N, Landry CR, Doucet N, Bisson N.

Mol Cell. 2018 Jun 21;70(6):995-1007.e11. doi: 10.1016/j.molcel.2018.05.013. Epub 2018 Jun 18.


Mitochondrial Recombination Reveals Mito-Mito Epistasis in Yeast.

Wolters JF, Charron G, Gaspary A, Landry CR, Fiumera AC, Fiumera HL.

Genetics. 2018 May;209(1):307-319. doi: 10.1534/genetics.117.300660. Epub 2018 Mar 12.


Extended linkers improve the detection of protein-protein interactions (PPIs) by dihydrofolate reductase protein-fragment complementation assay (DHFR PCA) in living cells.

Chrétien AÈ, Gagnon-Arsenault I, Dubé AK, Barbeau X, Després PC, Lamothe C, Dion-Côté AM, Lagüe P, Landry CR.

Mol Cell Proteomics. 2018 Mar;17(3):549. doi: 10.1074/mcp.A117.000385. No abstract available.


Extended Linkers Improve the Detection of Protein-protein Interactions (PPIs) by Dihydrofolate Reductase Protein-fragment Complementation Assay (DHFR PCA) in Living Cells.

Chrétien AÈ, Gagnon-Arsenault I, Dubé AK, Barbeau X, Després PC, Lamothe C, Dion-Côté AM, Lagüe P, Landry CR.

Mol Cell Proteomics. 2018 Feb;17(2):373-383. doi: 10.1074/mcp.TIR117.000385. Epub 2017 Dec 4. Erratum in: Mol Cell Proteomics. 2018 Mar;17(3):549.


Deep transcriptome annotation enables the discovery and functional characterization of cryptic small proteins.

Samandi S, Roy AV, Delcourt V, Lucier JF, Gagnon J, Beaudoin MC, Vanderperre B, Breton MA, Motard J, Jacques JF, Brunelle M, Gagnon-Arsenault I, Fournier I, Ouangraoua A, Hunting DJ, Cohen AA, Landry CR, Scott MS, Roucou X.

Elife. 2017 Oct 30;6. pii: e27860. doi: 10.7554/eLife.27860.


Molecular Dependency Impacts on the Compensating Ability of Paralogs: A Response to Veitia.

Landry CR, Diss G.

Trends Genet. 2017 Oct;33(10):657-658. doi: 10.1016/j.tig.2017.07.012. Epub 2017 Sep 1. No abstract available.


Evolutionary biology through the lens of budding yeast comparative genomics.

Marsit S, Leducq JB, Durand É, Marchant A, Filteau M, Landry CR.

Nat Rev Genet. 2017 Oct;18(10):581-598. doi: 10.1038/nrg.2017.49. Epub 2017 Jul 17. Review.


No evidence for extrinsic post-zygotic isolation in a wild Saccharomyces yeast system.

Charron G, Landry CR.

Biol Lett. 2017 Jun;13(6). pii: 20170197. doi: 10.1098/rsbl.2017.0197.


The Rapid Evolution of an Ohnolog Contributes to the Ecological Specialization of Incipient Yeast Species.

Eberlein C, Nielly-Thibault L, Maaroufi H, Dubé AK, Leducq JB, Charron G, Landry CR.

Mol Biol Evol. 2017 Sep 1;34(9):2173-2186. doi: 10.1093/molbev/msx153.


Mitochondrial Recombination and Introgression during Speciation by Hybridization.

Leducq JB, Henault M, Charron G, Nielly-Thibault L, Terrat Y, Fiumera HL, Shapiro BJ, Landry CR.

Mol Biol Evol. 2017 Aug 1;34(8):1947-1959. doi: 10.1093/molbev/msx139.


Hybridization and adaptive evolution of diverse Saccharomyces species for cellulosic biofuel production.

Peris D, Moriarty RV, Alexander WG, Baker E, Sylvester K, Sardi M, Langdon QK, Libkind D, Wang QM, Bai FY, Leducq JB, Charron G, Landry CR, Sampaio JP, Gonçalves P, Hyma KE, Fay JC, Sato TK, Hittinger CT.

Biotechnol Biofuels. 2017 Mar 27;10:78. doi: 10.1186/s13068-017-0763-7. eCollection 2017.


Gene duplication can impart fragility, not robustness, in the yeast protein interaction network.

Diss G, Gagnon-Arsenault I, Dion-Coté AM, Vignaud H, Ascencio DI, Berger CM, Landry CR.

Science. 2017 Feb 10;355(6325):630-634. doi: 10.1126/science.aai7685.


Major host transitions are modulated through transcriptome-wide reprogramming events in Schistocephalus solidus, a threespine stickleback parasite.

Hébert FO, Grambauer S, Barber I, Landry CR, Aubin-Horth N.

Mol Ecol. 2017 Feb;26(4):1118-1130. doi: 10.1111/mec.13970. Epub 2017 Jan 27.


Population genomics reveals structure at the individual, host-tree scale and persistence of genotypic variants of the undomesticated yeast Saccharomyces paradoxus in a natural woodland.

Xia W, Nielly-Thibault L, Charron G, Landry CR, Kasimer D, Anderson JB, Kohn LM.

Mol Ecol. 2017 Feb;26(4):995-1007. doi: 10.1111/mec.13954. Epub 2017 Jan 27.


When nuclear-encoded proteins and mitochondrial RNAs do not get along, species split apart.

Hénault M, Landry CR.

EMBO Rep. 2017 Jan;18(1):8-10. doi: 10.15252/embr.201643645. Epub 2016 Dec 16. No abstract available.


Mitotic phosphotyrosine network analysis reveals that tyrosine phosphorylation regulates Polo-like kinase 1 (PLK1).

Caron D, Byrne DP, Thebault P, Soulet D, Landry CR, Eyers PA, Elowe S.

Sci Signal. 2016 Dec 13;9(458):rs14.


Identification of the fitness determinants of budding yeast on a natural substrate.

Filteau M, Charron G, Landry CR.

ISME J. 2017 Apr;11(4):959-971. doi: 10.1038/ismej.2016.170. Epub 2016 Dec 9.


Protein-Fragment Complementation Assays for Large-Scale Analysis, Functional Dissection, and Spatiotemporal Dynamic Studies of Protein-Protein Interactions in Living Cells.

Michnick SW, Landry CR, Levy ED, Diss G, Ear PH, Kowarzyk J, Malleshaiah MK, Messier V, Tchekanda E.

Cold Spring Harb Protoc. 2016 Nov 1;2016(11). doi: 10.1101/pdb.top083543.


The Dihydrofolate Reductase Protein-Fragment Complementation Assay: A Survival-Selection Assay for Large-Scale Analysis of Protein-Protein Interactions.

Michnick SW, Levy ED, Landry CR, Kowarzyk J, Messier V.

Cold Spring Harb Protoc. 2016 Nov 1;2016(11). doi: 10.1101/pdb.prot090027.


Molecular and cellular bases of adaptation to a changing environment in microorganisms.

Bleuven C, Landry CR.

Proc Biol Sci. 2016 Oct 26;283(1841). pii: 20161458. Review.


Plasmon-Enhanced Photocleaving Dynamics in Colloidal MicroRNA-Functionalized Silver Nanoparticles Monitored with Second Harmonic Generation.

Kumal RR, Abu-Laban M, Landry CR, Kruger B, Zhang Z, Hayes DJ, Haber LH.

Langmuir. 2016 Oct 11;32(40):10394-10401. Epub 2016 Sep 26.


Speciation driven by hybridization and chromosomal plasticity in a wild yeast.

Leducq JB, Nielly-Thibault L, Charron G, Eberlein C, Verta JP, Samani P, Sylvester K, Hittinger CT, Bell G, Landry CR.

Nat Microbiol. 2016 Jan 11;1:15003. doi: 10.1038/nmicrobiol.2015.3.


Complex Ancestries of Lager-Brewing Hybrids Were Shaped by Standing Variation in the Wild Yeast Saccharomyces eubayanus.

Peris D, Langdon QK, Moriarty RV, Sylvester K, Bontrager M, Charron G, Leducq JB, Landry CR, Libkind D, Hittinger CT.

PLoS Genet. 2016 Jul 6;12(7):e1006155. doi: 10.1371/journal.pgen.1006155. eCollection 2016 Jul.


Transcriptome sequences spanning key developmental states as a resource for the study of the cestode Schistocephalus solidus, a threespine stickleback parasite.

Hébert FO, Grambauer S, Barber I, Landry CR, Aubin-Horth N.

Gigascience. 2016 Jun 2;5:24. doi: 10.1186/s13742-016-0128-3.


[Wine yeast as a model for the study of human genes and diseases and their personalized effects].

Filteau M, Hamel V, Landry CR.

Med Sci (Paris). 2016 Apr;32(4):332-4. doi: 10.1051/medsci/20163204007. Epub 2016 May 2. French. No abstract available.


Evidence of Natural Hybridization in Brazilian Wild Lineages of Saccharomyces cerevisiae.

Barbosa R, Almeida P, Safar SV, Santos RO, Morais PB, Nielly-Thibault L, Leducq JB, Landry CR, Gonçalves P, Rosa CA, Sampaio JP.

Genome Biol Evol. 2016 Jan 18;8(2):317-29. doi: 10.1093/gbe/evv263.


The genomics of wild yeast populations sheds light on the domestication of man's best (micro) friend.

Eberlein C, Leducq JB, Landry CR.

Mol Ecol. 2015 Nov;24(21):5309-11. doi: 10.1111/mec.13380.


Multi-scale perturbations of protein interactomes reveal their mechanisms of regulation, robustness and insights into genotype-phenotype maps.

Filteau M, Vignaud H, Rochette S, Diss G, Chrétien AÈ, Berger CM, Landry CR.

Brief Funct Genomics. 2016 Mar;15(2):130-7. doi: 10.1093/bfgp/elv043. Epub 2015 Oct 17. Review.


Evolutionary rescue by compensatory mutations is constrained by genomic and environmental backgrounds.

Filteau M, Hamel V, Pouliot MC, Gagnon-Arsenault I, Dubé AK, Landry CR.

Mol Syst Biol. 2015 Oct 12;11(10):832. doi: 10.15252/msb.20156444.


RNAseq Analysis Highlights Specific Transcriptome Signatures of Yeast and Mycelial Growth Phases in the Dutch Elm Disease Fungus Ophiostoma novo-ulmi.

Nigg M, Laroche J, Landry CR, Bernier L.

G3 (Bethesda). 2015 Sep 17;5(11):2487-95. doi: 10.1534/g3.115.021022.


Monitoring the Photocleaving Dynamics of Colloidal MicroRNA-Functionalized Gold Nanoparticles Using Second Harmonic Generation.

Kumal RR, Landry CR, Abu-Laban M, Hayes DJ, Haber LH.

Langmuir. 2015 Sep 15;31(36):9983-90. doi: 10.1021/acs.langmuir.5b02199. Epub 2015 Sep 3.


Lachancea quebecensis sp. nov., a yeast species consistently isolated from tree bark in the Canadian province of Québec.

Freel KC, Charron G, Leducq JB, Landry CR, Schacherer J.

Int J Syst Evol Microbiol. 2015 Oct;65(10):3392-9. doi: 10.1099/ijsem.0.000426.


Feedback regulation between autophagy and PKA.

Torres-Quiroz F, Filteau M, Landry CR.

Autophagy. 2015;11(7):1181-3. doi: 10.1080/15548627.2015.1055440.


Identification of candidate mimicry proteins involved in parasite-driven phenotypic changes.

Hebert FO, Phelps L, Samonte I, Panchal M, Grambauer S, Barber I, Kalbe M, Landry CR, Aubin-Horth N.

Parasit Vectors. 2015 Apr 15;8:225. doi: 10.1186/s13071-015-0834-1.


Genome-wide protein-protein interaction screening by protein-fragment complementation assay (PCA) in living cells.

Rochette S, Diss G, Filteau M, Leducq JB, Dubé AK, Landry CR.

J Vis Exp. 2015 Mar 3;(97). doi: 10.3791/52255.


Systematic identification of signal integration by protein kinase A.

Filteau M, Diss G, Torres-Quiroz F, Dubé AK, Schraffl A, Bachmann VA, Gagnon-Arsenault I, Chrétien AÈ, Steunou AL, Dionne U, Côté J, Bisson N, Stefan E, Landry CR.

Proc Natl Acad Sci U S A. 2015 Apr 7;112(14):4501-6. doi: 10.1073/pnas.1409938112. Epub 2015 Mar 23.

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