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Items: 9

1.

PPR-SSM: personalized PageRank and semantic similarity measures for entity linking.

Lamurias A, Ruas P, Couto FM.

BMC Bioinformatics. 2019 Oct 29;20(1):534. doi: 10.1186/s12859-019-3157-y.

2.

BO-LSTM: classifying relations via long short-term memory networks along biomedical ontologies.

Lamurias A, Sousa D, Clarke LA, Couto FM.

BMC Bioinformatics. 2019 Jan 7;20(1):10. doi: 10.1186/s12859-018-2584-5.

3.

MER: a shell script and annotation server for minimal named entity recognition and linking.

Couto FM, Lamurias A.

J Cheminform. 2018 Dec 5;10(1):58. doi: 10.1186/s13321-018-0312-9.

4.

Identifying Human Phenotype Terms by Combining Machine Learning and Validation Rules.

Lobo M, Lamurias A, Couto FM.

Biomed Res Int. 2017;2017:8565739. doi: 10.1155/2017/8565739. Epub 2017 Nov 9.

5.

Generating a Tolerogenic Cell Therapy Knowledge Graph from Literature.

Lamurias A, Ferreira JD, Clarke LA, Couto FM.

Front Immunol. 2017 Nov 29;8:1656. doi: 10.3389/fimmu.2017.01656. eCollection 2017.

6.

Extracting microRNA-gene relations from biomedical literature using distant supervision.

Lamurias A, Clarke LA, Couto FM.

PLoS One. 2017 Mar 6;12(3):e0171929. doi: 10.1371/journal.pone.0171929. eCollection 2017.

7.

The CHEMDNER corpus of chemicals and drugs and its annotation principles.

Krallinger M, Rabal O, Leitner F, Vazquez M, Salgado D, Lu Z, Leaman R, Lu Y, Ji D, Lowe DM, Sayle RA, Batista-Navarro RT, Rak R, Huber T, Rocktäschel T, Matos S, Campos D, Tang B, Xu H, Munkhdalai T, Ryu KH, Ramanan SV, Nathan S, Žitnik S, Bajec M, Weber L, Irmer M, Akhondi SA, Kors JA, Xu S, An X, Sikdar UK, Ekbal A, Yoshioka M, Dieb TM, Choi M, Verspoor K, Khabsa M, Giles CL, Liu H, Ravikumar KE, Lamurias A, Couto FM, Dai HJ, Tsai RT, Ata C, Can T, Usié A, Alves R, Segura-Bedmar I, Martínez P, Oyarzabal J, Valencia A.

J Cheminform. 2015 Jan 19;7(Suppl 1 Text mining for chemistry and the CHEMDNER track):S2. doi: 10.1186/1758-2946-7-S1-S2. eCollection 2015.

8.

Improving chemical entity recognition through h-index based semantic similarity.

Lamurias A, Ferreira JD, Couto FM.

J Cheminform. 2015 Jan 19;7(Suppl 1 Text mining for chemistry and the CHEMDNER track):S13. doi: 10.1186/1758-2946-7-S1-S13. eCollection 2015.

9.

Identifying interactions between chemical entities in biomedical text.

Lamurias A, Ferreira JD, Couto FM.

J Integr Bioinform. 2014 Oct 23;11(3):247. doi: 10.2390/biecoll-jib-2014-247.

PMID:
25339081

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