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Items: 1 to 50 of 55

1.

Longitudinal antibody responses in people who inject drugs infected with similar HIV strains.

Redd AD, Doria-Rose NA, Weiner JA, Nason M, Seivers M, Schmidt SD, Laeyendecker O, Martens C, Bruno D, Keele BF, Raju N, Georgiev IS, Lamers SL, Astemborski J, Kirk GD, Mascola JR, Ackerman ME, Mehta SH, Quinn TC.

J Infect Dis. 2019 Oct 4. pii: jiz503. doi: 10.1093/infdis/jiz503. [Epub ahead of print]

PMID:
31581292
2.

Inconsistent temporal patterns of genetic variation of HCV among high-risk subjects may impact inference of transmission networks.

Rose R, Rodriguez C, Dollar JJ, Lamers SL, Massaccesi G, Osburn W, Ray SC, Thomas DL, Cox AL, Laeyendecker O.

Infect Genet Evol. 2019 Jul;71:1-6. doi: 10.1016/j.meegid.2019.02.025. Epub 2019 Feb 22.

PMID:
30802530
3.

Emerging Patterns in HIV-1 gp120 Variable Domains in Anatomical Tissues in the Absence of a Plasma Viral Load.

Lamers SL, Fogel GB, Nolan DJ, Barbier AE, Rose R, Singer EJ, Gonzalez-Perez MP, McGrath MS.

AIDS Res Hum Retroviruses. 2019 Jun;35(6):588-596. doi: 10.1089/AID.2018.0267. Epub 2019 Apr 10.

PMID:
30793919
4.

Quantitation of the latent HIV-1 reservoir from the sequence diversity in viral outgrowth assays.

Poon AFY, Prodger JL, Lynch BA, Lai J, Reynolds SJ, Kasule J, Capoferri AA, Lamers SL, Rodriguez CW, Bruno D, Porcella SF, Martens C, Quinn TC, Redd AD.

Retrovirology. 2018 Jul 5;15(1):47. doi: 10.1186/s12977-018-0426-1.

5.

Ultradeep single-molecule real-time sequencing of HIV envelope reveals complete compartmentalization of highly macrophage-tropic R5 proviral variants in brain and CXCR4-using variants in immune and peripheral tissues.

Brese RL, Gonzalez-Perez MP, Koch M, O'Connell O, Luzuriaga K, Somasundaran M, Clapham PR, Dollar JJ, Nolan DJ, Rose R, Lamers SL.

J Neurovirol. 2018 Aug;24(4):439-453. doi: 10.1007/s13365-018-0633-5. Epub 2018 Apr 23.

PMID:
29687407
6.

Urogenital Chlamydia trachomatis multilocus sequence types and genovar distribution in chlamydia infected patients in a multi-ethnic region of Saratov, Russia.

Feodorova VA, Konnova SS, Saltykov YV, Zaitsev SS, Subbotina IA, Polyanina TI, Ulyanov SS, Lamers SL, Gaydos CA, Quinn TC, Motin VL.

PLoS One. 2018 Apr 11;13(4):e0195386. doi: 10.1371/journal.pone.0195386. eCollection 2018.

7.

Complex patterns of Hepatitis-C virus longitudinal clustering in a high-risk population.

Rose R, Lamers SL, Massaccesi G, Osburn W, Ray SC, Thomas DL, Cox AL, Laeyendecker O.

Infect Genet Evol. 2018 Mar;58:77-82. doi: 10.1016/j.meegid.2017.12.015. Epub 2017 Dec 16.

8.

Early Epstein-Barr Virus Genomic Diversity and Convergence toward the B95.8 Genome in Primary Infection.

Weiss ER, Lamers SL, Henderson JL, Melnikov A, Somasundaran M, Garber M, Selin L, Nusbaum C, Luzuriaga K.

J Virol. 2018 Jan 2;92(2). pii: e01466-17. doi: 10.1128/JVI.01466-17. Print 2018 Jan 15.

9.

The Spleen Is an HIV-1 Sanctuary During Combined Antiretroviral Therapy.

Nolan DJ, Rose R, Rodriguez PH, Salemi M, Singer EJ, Lamers SL, McGrath MS.

AIDS Res Hum Retroviruses. 2018 Jan;34(1):123-125. doi: 10.1089/AID.2017.0254. Epub 2017 Nov 30.

10.

Brain-specific HIV Nef identified in multiple patients with neurological disease.

Lamers SL, Fogel GB, Liu ES, Barbier AE, Rodriguez CW, Singer EJ, Nolan DJ, Rose R, McGrath MS.

J Neurovirol. 2018 Feb;24(1):1-15. doi: 10.1007/s13365-017-0586-0. Epub 2017 Oct 23.

11.

Eradication of HIV from Tissue Reservoirs: Challenges for the Cure.

Rose R, Nolan DJ, Maidji E, Stoddart CA, Singer EJ, Lamers SL, McGrath MS.

AIDS Res Hum Retroviruses. 2018 Jan;34(1):3-8. doi: 10.1089/AID.2017.0072. Epub 2017 Aug 7. Review.

12.

Predicted coreceptor usage at end-stage HIV disease in tissues derived from subjects on antiretroviral therapy with an undetectable plasma viral load.

Lamers SL, Fogel GB, Liu ES, Nolan DJ, Salemi M, Barbier AE, Rose R, Singer EJ, McGrath MS.

Infect Genet Evol. 2017 Jul;51:194-197. doi: 10.1016/j.meegid.2017.04.004. Epub 2017 Apr 6.

13.

Paucity of Intact Non-Induced Provirus with Early, Long-Term Antiretroviral Therapy of Perinatal HIV Infection.

Rainwater-Lovett K, Ziemniak C, Watson D, Luzuriaga K, Siberry G, Petru A, Chen Y, Uprety P, McManus M, Ho YC, Lamers SL, Persaud D.

PLoS One. 2017 Feb 8;12(2):e0170548. doi: 10.1371/journal.pone.0170548. eCollection 2017.

14.

Identifying Transmission Clusters with Cluster Picker and HIV-TRACE.

Rose R, Lamers SL, Dollar JJ, Grabowski MK, Hodcroft EB, Ragonnet-Cronin M, Wertheim JO, Redd AD, German D, Laeyendecker O.

AIDS Res Hum Retroviruses. 2017 Mar;33(3):211-218. doi: 10.1089/AID.2016.0205. Epub 2016 Dec 13.

15.

Low Rates of Transmitted Drug Resistance Among Newly Identified HIV-1 Seroconverters in Rural Rakai, Uganda.

Reynolds SJ, Ssempijja V, Galiwango R, Ndyanabo A, Nakigozi G, Lyagoba F, Nazziwa J, Redd A, Lamers SL, Gray R, Wawer M, Serwadda D, Quinn TC.

AIDS Res Hum Retroviruses. 2017 May;33(5):448-451. doi: 10.1089/AID.2015.0370. Epub 2016 Nov 28.

16.

HIV-1 Evolutionary Patterns Associated with Metastatic Kaposi's Sarcoma during AIDS.

Lamers SL, Rose R, Nolan DJ, Fogel GB, Barbier AE, Salemi M, McGrath MS.

Sarcoma. 2016;2016:4510483. doi: 10.1155/2016/4510483. Epub 2016 Aug 29.

17.

Correction for Rife et al., Evolution of Neuroadaptation in the Periphery and Purifying Selection in the Brain Contribute to Compartmentalization of Simian Immunodeficiency Virus (SIV) in the Brains of Rhesus Macaques with SIV-Associated Encephalitis.

Rife BD, Nolan DJ, Lamers SL, Autissier P, Burdo T, Williams KC, Salemi M.

J Virol. 2016 Sep 12;90(19):8947. doi: 10.1128/JVI.01304-16. Print 2016 Oct 1. No abstract available.

18.

HIV DNA Is Frequently Present within Pathologic Tissues Evaluated at Autopsy from Combined Antiretroviral Therapy-Treated Patients with Undetectable Viral Loads.

Lamers SL, Rose R, Maidji E, Agsalda-Garcia M, Nolan DJ, Fogel GB, Salemi M, Garcia DL, Bracci P, Yong W, Commins D, Said J, Khanlou N, Hinkin CH, Sueiras MV, Mathisen G, Donovan S, Shiramizu B, Stoddart CA, McGrath MS, Singer EJ.

J Virol. 2016 Sep 29;90(20):8968-83. doi: 10.1128/JVI.00674-16. Print 2016 Oct 15.

19.

HIV Maintains an Evolving and Dispersed Population in Multiple Tissues during Suppressive Combined Antiretroviral Therapy in Individuals with Cancer.

Rose R, Lamers SL, Nolan DJ, Maidji E, Faria NR, Pybus OG, Dollar JJ, Maruniak SA, McAvoy AC, Salemi M, Stoddart CA, Singer EJ, McGrath MS.

J Virol. 2016 Sep 29;90(20):8984-93. doi: 10.1128/JVI.00684-16. Print 2016 Oct 15.

20.

HIV-1 Sequence Data Coverage in Central East Africa from 1959 to 2013.

Lamers SL, Barbier AE, Ratmann O, Fraser C, Rose R, Laeyendecker O, Grabowski MK.

AIDS Res Hum Retroviruses. 2016 Sep;32(9):904-8. doi: 10.1089/AID.2016.0079. Epub 2016 Aug 2.

21.
22.

On the Physicochemical and Structural Modifications Associated with HIV-1 Subtype B Tropism Transition.

Lamers SL, Fogel GB, Liu ES, Salemi M, McGrath MS.

AIDS Res Hum Retroviruses. 2016 Aug;32(8):829-40. doi: 10.1089/AID.2015.0373. Epub 2016 Jun 1.

23.

The meningeal lymphatic system: a route for HIV brain migration?

Lamers SL, Rose R, Ndhlovu LC, Nolan DJ, Salemi M, Maidji E, Stoddart CA, McGrath MS.

J Neurovirol. 2016 Jun;22(3):275-81. doi: 10.1007/s13365-015-0399-y. Epub 2015 Nov 16. Review.

24.

Identification of dual-tropic HIV-1 using evolved neural networks.

Fogel GB, Lamers SL, Liu ES, Salemi M, McGrath MS.

Biosystems. 2015 Nov;137:12-9. doi: 10.1016/j.biosystems.2015.09.007. Epub 2015 Sep 28.

25.

Tracking the Emergence of Host-Specific Simian Immunodeficiency Virus env and nef Populations Reveals nef Early Adaptation and Convergent Evolution in Brain of Naturally Progressing Rhesus Macaques.

Lamers SL, Nolan DJ, Rife BD, Fogel GB, McGrath MS, Burdo TH, Autissier P, Williams KC, Goodenow MM, Salemi M.

J Virol. 2015 Aug;89(16):8484-96. doi: 10.1128/JVI.01010-15. Epub 2015 Jun 3.

26.

Genome Sequencing and Analysis of Geographically Diverse Clinical Isolates of Herpes Simplex Virus 2.

Newman RM, Lamers SL, Weiner B, Ray SC, Colgrove RC, Diaz F, Jing L, Wang K, Saif S, Young S, Henn M, Laeyendecker O, Tobian AA, Cohen JI, Koelle DM, Quinn TC, Knipe DM.

J Virol. 2015 Aug;89(16):8219-32. doi: 10.1128/JVI.01303-15. Epub 2015 May 27.

27.

Global Diversity within and between Human Herpesvirus 1 and 2 Glycoproteins.

Lamers SL, Newman RM, Laeyendecker O, Tobian AA, Colgrove RC, Ray SC, Koelle DM, Cohen J, Knipe DM, Quinn TC.

J Virol. 2015 Aug;89(16):8206-18. doi: 10.1128/JVI.01302-15. Epub 2015 May 27.

28.

Factors related to HIV-associated neurocognitive impairment differ with age.

Fogel GB, Lamers SL, Levine AJ, Valdes-Sueiras M, McGrath MS, Shapshak P, Singer EJ.

J Neurovirol. 2015 Feb;21(1):56-65. doi: 10.1007/s13365-014-0296-9. Epub 2014 Nov 18.

29.

Spatiotemporal dynamics of simian immunodeficiency virus brain infection in CD8+ lymphocyte-depleted rhesus macaques with neuroAIDS.

Strickland SL, Rife BD, Lamers SL, Nolan DJ, Veras NM, Prosperi MC, Burdo TH, Autissier P, Nowlin B, Goodenow MM, Suchard MA, Williams KC, Salemi M.

J Gen Virol. 2014 Dec;95(Pt 12):2784-95. doi: 10.1099/vir.0.070318-0. Epub 2014 Sep 9.

30.

HIV-associated neuropathogenesis: a systems biology perspective for modeling and therapy.

Lamers SL, Fogel GB, Nolan DJ, McGrath MS, Salemi M.

Biosystems. 2014 May;119:53-61. doi: 10.1016/j.biosystems.2014.04.002. Epub 2014 Apr 13. Review.

31.

Longitudinal analysis of intra-host simian immunodeficiency virus recombination in varied tissues of the rhesus macaque model for neuroAIDS.

Lamers SL, Nolan DJ, Strickland SL, Prosperi M, Fogel GB, Goodenow MM, Salemi M.

J Gen Virol. 2013 Nov;94(Pt 11):2469-79. doi: 10.1099/vir.0.055335-0. Epub 2013 Aug 20.

32.

HIV-1 Nef in macrophage-mediated disease pathogenesis.

Lamers SL, Fogel GB, Singer EJ, Salemi M, Nolan DJ, Huysentruyt LC, McGrath MS.

Int Rev Immunol. 2012 Dec;31(6):432-50. doi: 10.3109/08830185.2012.737073. Review.

33.

Efficient transmission and persistence of low-frequency SIVmac251 variants in CD8-depleted rhesus macaques with different neuropathology.

Strickland SL, Gray RR, Lamers SL, Burdo TH, Huenink E, Nolan DJ, Nowlin B, Alvarez X, Midkiff CC, Goodenow MM, Williams K, Salemi M.

J Gen Virol. 2012 May;93(Pt 5):925-38. doi: 10.1099/vir.0.039586-0. Epub 2012 Feb 1.

34.

HIV type 1 genetic variation in foreskin and blood from subjects in Rakai, Uganda.

Galiwango RM, Lamers SL, Redd AD, Manucci J, Tobian AA, Sewankambo N, Kigozi G, Nakigozi G, Serwadda D, Boaz I, Nalugoda F, Sullivan DJ, Kong X, Wawer MJ, Gray RH, Quinn TC, Laeyendecker O; Rakai Health Sciences Program.

AIDS Res Hum Retroviruses. 2012 Jul;28(7):729-33. doi: 10.1089/AID.2011.0176. Epub 2011 Sep 19.

35.

Significant genetic heterogeneity of the SIVmac251 viral swarm derived from different sources.

Strickland SL, Gray RR, Lamers SL, Burdo TH, Huenink E, Nolan DJ, Nowlin B, Alvarez X, Midkiff CC, Goodenow MM, Williams K, Salemi M.

AIDS Res Hum Retroviruses. 2011 Dec;27(12):1327-32. doi: 10.1089/aid.2011.0100. Epub 2011 Jun 28.

36.

HIV-1 nef protein structures associated with brain infection and dementia pathogenesis.

Lamers SL, Poon AF, McGrath MS.

PLoS One. 2011 Feb 9;6(2):e16659. doi: 10.1371/journal.pone.0016659.

37.

Molecular epidemiology of HIV type 1 in Singapore and identification of novel CRF01_AE/B recombinant forms.

Ng OT, Munshaw S, Lamers SL, Chew KK, Lin L, Redd AD, Manucci J, Quinn TC, Ray SC, Chua A, Leo YS, Laeyendecker O.

AIDS Res Hum Retroviruses. 2011 Oct;27(10):1135-7. doi: 10.1089/AID.2010.0364. Epub 2011 Feb 14.

38.

HIV-1 nef protein visits B-cells via macrophage nanotubes: a mechanism for AIDS-related lymphoma pathogenesis?

Lamers SL, Fogel GB, Huysentruyt LC, McGrath MS.

Curr HIV Res. 2010 Dec;8(8):638-40.

39.

HIV-1 phylogenetic analysis shows HIV-1 transits through the meninges to brain and peripheral tissues.

Lamers SL, Gray RR, Salemi M, Huysentruyt LC, McGrath MS.

Infect Genet Evol. 2011 Jan;11(1):31-7. doi: 10.1016/j.meegid.2010.10.016. Epub 2010 Nov 3.

40.

HIV-miR-H1 evolvability during HIV pathogenesis.

Lamers SL, Fogel GB, McGrath MS.

Biosystems. 2010 Aug;101(2):88-96. doi: 10.1016/j.biosystems.2010.05.001. Epub 2010 May 31.

41.

Human immunodeficiency virus-1 evolutionary patterns associated with pathogenic processes in the brain.

Lamers SL, Salemi M, Galligan DC, Morris A, Gray R, Fogel G, Zhao L, McGrath MS.

J Neurovirol. 2010 May;16(3):230-41. doi: 10.3109/13550281003735709.

42.

Distinct patterns of HIV-1 evolution within metastatic tissues in patients with non-Hodgkins lymphoma.

Salemi M, Lamers SL, Huysentruyt LC, Galligan D, Gray RR, Morris A, McGrath MS.

PLoS One. 2009 Dec 3;4(12):e8153. doi: 10.1371/journal.pone.0008153.

43.

Geographic HIV type 1 subtype distribution in Rakai district, Uganda.

Collinson-Streng AN, Redd AD, Sewankambo NK, Serwadda D, Rezapour M, Lamers SL, Gray RH, Wawer MJ, Quinn TC, Laeyendecker O.

AIDS Res Hum Retroviruses. 2009 Oct;25(10):1045-8. doi: 10.1089/aid.2009.0127.

44.

High level HIV-1 DNA concentrations in brain tissues differentiate patients with post-HAART AIDS dementia complex or cardiovascular disease from those with AIDS.

Zhao L, Galligan DC, Lamers SL, Yu S, Shagrun L, Salemi M, McGrath MS.

Sci China C Life Sci. 2009 Jul;52(7):651-6. doi: 10.1007/s11427-009-0085-5. Epub 2009 Jul 30.

PMID:
19641870
45.

Extensive HIV-1 intra-host recombination is common in tissues with abnormal histopathology.

Lamers SL, Salemi M, Galligan DC, de Oliveira T, Fogel GB, Granier SC, Zhao L, Brown JN, Morris A, Masliah E, McGrath MS.

PLoS One. 2009;4(3):e5065. doi: 10.1371/journal.pone.0005065. Epub 2009 Mar 31.

46.

Prediction of R5, X4, and R5X4 HIV-1 coreceptor usage with evolved neural networks.

Lamers SL, Salemi M, McGrath MS, Fogel GB.

IEEE/ACM Trans Comput Biol Bioinform. 2008 Apr-Jun;5(2):291-300. doi: 10.1109/TCBB.2007.1074.

47.
48.

Increased replication of non-syncytium-inducing HIV type 1 isolates in monocyte-derived macrophages is linked to advanced disease in infected children.

Tuttle DL, Anders CB, Aquino-De Jesus MJ, Poole PP, Lamers SL, Briggs DR, Pomeroy SM, Alexander L, Peden KW, Andiman WA, Sleasman JW, Goodenow MM.

AIDS Res Hum Retroviruses. 2002 Mar 20;18(5):353-62.

PMID:
11897037
49.

Human immunodeficiency virus type 1 protease genotype predicts immune and viral responses to combination therapy with protease inhibitors (PIs) in PI-naive patients.

Perez EE, Rose SL, Peyser B, Lamers SL, Burkhardt B, Dunn BM, Hutson AD, Sleasman JW, Goodenow MM.

J Infect Dis. 2001 Feb 15;183(4):579-88. Epub 2001 Jan 19.

PMID:
11170983
50.

Characterization of V3 sequence heterogeneity in subtype C human immunodeficiency virus type 1 isolates from Malawi: underrepresentation of X4 variants.

Ping LH, Nelson JA, Hoffman IF, Schock J, Lamers SL, Goodman M, Vernazza P, Kazembe P, Maida M, Zimba D, Goodenow MM, Eron JJ Jr, Fiscus SA, Cohen MS, Swanstrom R.

J Virol. 1999 Aug;73(8):6271-81.

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