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Items: 10

1.

MEGARes 2.0: a database for classification of antimicrobial drug, biocide and metal resistance determinants in metagenomic sequence data.

Doster E, Lakin SM, Dean CJ, Wolfe C, Young JG, Boucher C, Belk KE, Noyes NR, Morley PS.

Nucleic Acids Res. 2020 Jan 8;48(D1):D561-D569. doi: 10.1093/nar/gkz1010.

PMID:
31722416
2.

Characterization of the Microbial Resistome in Conventional and "Raised Without Antibiotics" Beef and Dairy Production Systems.

Rovira P, McAllister T, Lakin SM, Cook SR, Doster E, Noyes NR, Weinroth MD, Yang X, Parker JK, Boucher C, Booker CW, Woerner DR, Belk KE, Morley PS.

Front Microbiol. 2019 Sep 4;10:1980. doi: 10.3389/fmicb.2019.01980. eCollection 2019.

3.

Horizontal Gene Transfer and Acquired Antibiotic Resistance in Salmonella enterica Serovar Heidelberg following In Vitro Incubation in Broiler Ceca.

Oladeinde A, Cook K, Lakin SM, Woyda R, Abdo Z, Looft T, Herrington K, Zock G, Lawrence JP, Thomas JC 4th, Beaudry MS, Glenn T.

Appl Environ Microbiol. 2019 Oct 30;85(22). pii: e01903-19. doi: 10.1128/AEM.01903-19. Print 2019 Nov 15.

4.

Comparative diversity of microbiomes and Resistomes in beef feedlots, downstream environments and urban sewage influent.

Zaheer R, Lakin SM, Polo RO, Cook SR, Larney FJ, Morley PS, Booker CW, Hannon SJ, Van Domselaar G, Read RR, McAllister TA.

BMC Microbiol. 2019 Aug 27;19(1):197. doi: 10.1186/s12866-019-1548-x.

5.

Hierarchical Hidden Markov models enable accurate and diverse detection of antimicrobial resistance sequences.

Lakin SM, Kuhnle A, Alipanahi B, Noyes NR, Dean C, Muggli M, Raymond R, Abdo Z, Prosperi M, Belk KE, Morley PS, Boucher C.

Commun Biol. 2019 Aug 6;2:294. doi: 10.1038/s42003-019-0545-9. eCollection 2019.

6.

Effects of a Saccharomyces cerevisiae fermentation product on liver abscesses, fecal microbiome, and resistome in feedlot cattle raised without antibiotics.

Huebner KL, Martin JN, Weissend CJ, Holzer KL, Parker JK, Lakin SM, Doster E, Weinroth MD, Abdo Z, Woerner DR, Metcalf JL, Geornaras I, Bryant TC, Morley PS, Belk KE.

Sci Rep. 2019 Feb 22;9(1):2559. doi: 10.1038/s41598-019-39181-7.

7.

Investigating Effects of Tulathromycin Metaphylaxis on the Fecal Resistome and Microbiome of Commercial Feedlot Cattle Early in the Feeding Period.

Doster E, Rovira P, Noyes NR, Burgess BA, Yang X, Weinroth MD, Lakin SM, Dean CJ, Linke L, Magnuson R, Jones KI, Boucher C, Ruiz J, Belk KE, Morley PS.

Front Microbiol. 2018 Jul 30;9:1715. doi: 10.3389/fmicb.2018.01715. eCollection 2018.

8.

Enrichment allows identification of diverse, rare elements in metagenomic resistome-virulome sequencing.

Noyes NR, Weinroth ME, Parker JK, Dean CJ, Lakin SM, Raymond RA, Rovira P, Doster E, Abdo Z, Martin JN, Jones KL, Ruiz J, Boucher CA, Belk KE, Morley PS.

Microbiome. 2017 Oct 17;5(1):142. doi: 10.1186/s40168-017-0361-8.

9.

MEGARes: an antimicrobial resistance database for high throughput sequencing.

Lakin SM, Dean C, Noyes NR, Dettenwanger A, Ross AS, Doster E, Rovira P, Abdo Z, Jones KL, Ruiz J, Belk KE, Morley PS, Boucher C.

Nucleic Acids Res. 2017 Jan 4;45(D1):D574-D580. doi: 10.1093/nar/gkw1009. Epub 2016 Nov 28.

10.

West African Anopheles gambiae mosquitoes harbor a taxonomically diverse virome including new insect-specific flaviviruses, mononegaviruses, and totiviruses.

Fauver JR, Grubaugh ND, Krajacich BJ, Weger-Lucarelli J, Lakin SM, Fakoli LS 3rd, Bolay FK, Diclaro JW 2nd, Dabiré KR, Foy BD, Brackney DE, Ebel GD, Stenglein MD.

Virology. 2016 Nov;498:288-299. doi: 10.1016/j.virol.2016.07.031. Epub 2016 Sep 15.

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