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Items: 1 to 50 of 262

1.

Blind prediction of homo- and hetero- protein complexes: The CASP13-CAPRI experiment.

Lensink MF, Brysbaert G, Nadzirin N, Velankar S, Chaleil RAG, Gerguri T, Bates PA, Laine E, Carbone A, Grudinin S, Kong R, Liu RR, Xu XM, Shi H, Chang S, Eisenstein M, Karczynska A, Czaplewski C, Lubecka E, Lipska A, Krupa P, Mozolewska M, Golon Ł, Samsonov S, Liwo A, Crivelli S, Pagès G, Karasikov M, Kadukova M, Yan Y, Huang SY, Rosell M, Rodríguez-Lumbreras LA, Romero-Durana M, Díaz-Bueno L, Fernandez-Recio J, Christoffer C, Terashi G, Shin WH, Aderinwale T, Raghavendra Maddhuri Venkata Subraman S, Kihara D, Kozakov D, Vajda S, Porter K, Padhorny D, Desta I, Beglov D, Ignatov M, Kotelnikov S, Moal IH, Ritchie DW, Chauvot de Beauchêne I, Maigret B, Devignes MD, Echartea MER, Barradas-Bautista D, Cao Z, Cavallo L, Oliva R, Cao Y, Shen Y, Baek M, Park T, Woo H, Seok C, Braitbard M, Bitton L, Scheidman-Duhovny D, DapkŪnas J, Olechnovič K, Venclovas Č, Kundrotas PJ, Belkin S, Chakravarty D, Badal VD, Vakser IA, Vreven T, Vangaveti S, Borrman T, Weng Z, Guest JD, Gowthaman R, Pierce BG, Xu X, Duan R, Qiu L, Hou J, Ryan Merideth B, Ma Z, Cheng J, Zou X, Koukos PI, Roel-Touris J, Ambrosetti F, Geng C, Schaarschmidt J, Trellet ME, Melquiond ASJ, Xue L, Jiménez-García B, van Noort CW, Honorato RV, Bonvin AMJJ, Wodak SJ.

Proteins. 2019 Oct 14. doi: 10.1002/prot.25838. [Epub ahead of print]

PMID:
31612567
2.

Risk factors for post-operative complications after sentinel lymph node biopsy for cutaneous melanoma: Results from a large cohort study.

Lindqvist EK, Laine E, Kamali A, Sars C, Gillgren P, Schultz I.

J Plast Reconstr Aesthet Surg. 2019 Sep 16. pii: S1748-6815(19)30395-X. doi: 10.1016/j.bjps.2019.08.011. [Epub ahead of print]

PMID:
31607594
3.

Containing a measles outbreak in Minnesota, 2017: methods and challenges.

Banerjee E, Griffith J, Kenyon C, Christianson B, Strain A, Martin K, McMahon M, Bagstad E, Laine E, Hardy K, Grilli G, Walters J, Dunn D, Roddy M, Ehresmann K.

Perspect Public Health. 2019 Sep 4:1757913919871072. doi: 10.1177/1757913919871072. [Epub ahead of print]

PMID:
31480896
4.

A Green Ultrasound-Assisted Extraction Optimization of the Natural Antioxidant and Anti-Aging Flavonolignans from Milk Thistle Silybum marianum (L.) Gaertn. Fruits for Cosmetic Applications.

Drouet S, Leclerc EA, Garros L, Tungmunnithum D, Kabra A, Abbasi BH, Lainé É, Hano C.

Antioxidants (Basel). 2019 Aug 14;8(8). pii: E304. doi: 10.3390/antiox8080304.

5.

GEMME: a simple and fast global epistatic model predicting mutational effects.

Laine E, Karami Y, Carbone A.

Mol Biol Evol. 2019 Aug 12. pii: msz179. doi: 10.1093/molbev/msz179. [Epub ahead of print]

PMID:
31406981
6.

Decrypting protein surfaces by combining evolution, geometry, and molecular docking.

Dequeker C, Laine E, Carbone A.

Proteins. 2019 Nov;87(11):952-965. doi: 10.1002/prot.25757. Epub 2019 Jun 26.

PMID:
31199528
7.

Characterization of LuWRKY36, a flax transcription factor promoting secoisolariciresinol biosynthesis in response to Fusarium oxysporum elicitors in Linum usitatissimum L. hairy roots.

Markulin L, Corbin C, Renouard S, Drouet S, Durpoix C, Mathieu C, Lopez T, Auguin D, Hano C, Lainé É.

Planta. 2019 Jul;250(1):347-366. doi: 10.1007/s00425-019-03172-9. Epub 2019 Apr 29.

PMID:
31037486
8.

The control exerted by ABA on lignan biosynthesis in flax (Linum usitatissimum L.) is modulated by a Ca2+ signal transduction involving the calmodulin-like LuCML15b.

Markulin L, Drouet S, Corbin C, Decourtil C, Garros L, Renouard S, Lopez T, Mongelard G, Gutierrez L, Auguin D, Lainé E, Hano C.

J Plant Physiol. 2019 May;236:74-87. doi: 10.1016/j.jplph.2019.03.005. Epub 2019 Mar 23.

PMID:
30928768
9.

Pinoresinol-lariciresinol reductases, key to the lignan synthesis in plants.

Markulin L, Corbin C, Renouard S, Drouet S, Gutierrez L, Mateljak I, Auguin D, Hano C, Fuss E, Lainé E.

Planta. 2019 Jun;249(6):1695-1714. doi: 10.1007/s00425-019-03137-y. Epub 2019 Mar 20. Review.

PMID:
30895445
10.

Green Ultrasound Assisted Extraction of trans Rosmarinic Acid from Plectranthus scutellarioides (L.) R.Br. Leaves.

Tungmunnithum D, Garros L, Drouet S, Renouard S, Lainé E, Hano C.

Plants (Basel). 2019 Feb 27;8(3). pii: E50. doi: 10.3390/plants8030050.

11.

"Infostery" analysis of short molecular dynamics simulations identifies highly sensitive residues and predicts deleterious mutations.

Karami Y, Bitard-Feildel T, Laine E, Carbone A.

Sci Rep. 2018 Oct 31;8(1):16126. doi: 10.1038/s41598-018-34508-2.

12.

Insight into the Influence of Cultivar Type, Cultivation Year, and Site on the Lignans and Related Phenolic Profiles, and the Health-Promoting Antioxidant Potential of Flax (Linum usitatissimum L.) Seeds.

Garros L, Drouet S, Corbin C, Decourtil C, Fidel T, Lebas de Lacour J, Leclerc EA, Renouard S, Tungmunnithum D, Doussot J, Abassi BH, Maunit B, Lainé É, Fliniaux O, Mesnard F, Hano C.

Molecules. 2018 Oct 14;23(10). pii: E2636. doi: 10.3390/molecules23102636.

13.

Selective Synthesis of 3-O-Palmitoyl-Silybin, a New-to-Nature Flavonolignan with Increased Protective Action against Oxidative Damages in Lipophilic Media.

Drouet S, Doussot J, Garros L, Mathiron D, Bassard S, Favre-Réguillon A, Molinié R, Lainé É, Hano C.

Molecules. 2018 Oct 10;23(10). pii: E2594. doi: 10.3390/molecules23102594.

14.

Local Interaction Signal Analysis Predicts Protein-Protein Binding Affinity.

Raucci R, Laine E, Carbone A.

Structure. 2018 Jun 5;26(6):905-915.e4. doi: 10.1016/j.str.2018.04.006. Epub 2018 May 17.

15.

A genome-wide analysis of the flax (Linum usitatissimum L.) dirigent protein family: from gene identification and evolution to differential regulation.

Corbin C, Drouet S, Markulin L, Auguin D, Lainé É, Davin LB, Cort JR, Lewis NG, Hano C.

Plant Mol Biol. 2018 May;97(1-2):73-101. doi: 10.1007/s11103-018-0725-x. Epub 2018 Apr 30.

PMID:
29713868
16.

Investigation of Linum flavum (L.) Hairy Root Cultures for the Production of Anticancer Aryltetralin Lignans.

Renouard S, Corbin C, Drouet S, Medvedec B, Doussot J, Colas C, Maunit B, Bhambra AS, Gontier E, Jullian N, Mesnard F, Boitel M, Abbasi BH, Arroo RRJ, Lainé E, Hano C.

Int J Mol Sci. 2018 Mar 26;19(4). pii: E990. doi: 10.3390/ijms19040990.

17.

Meet-U: Educating through research immersion.

Abdollahi N, Albani A, Anthony E, Baud A, Cardon M, Clerc R, Czernecki D, Conte R, David L, Delaune A, Djerroud S, Fourgoux P, Guiglielmoni N, Laurentie J, Lehmann N, Lochard C, Montagne R, Myrodia V, Opuu V, Parey E, Polit L, Privé S, Quignot C, Ruiz-Cuevas M, Sissoko M, Sompairac N, Vallerix A, Verrecchia V, Delarue M, Guérois R, Ponty Y, Sacquin-Mora S, Carbone A, Froidevaux C, Le Crom S, Lespinet O, Weigt M, Abboud S, Bernardes J, Bouvier G, Dequeker C, Ferré A, Fuchs P, Lelandais G, Poulain P, Richard H, Schweke H, Laine E, Lopes A.

PLoS Comput Biol. 2018 Mar 15;14(3):e1005992. doi: 10.1371/journal.pcbi.1005992. eCollection 2018 Mar.

18.

Hospital Water Management Programs for Legionella Prevention, Minnesota, 2017.

Danila RN, Koranteng N, Como-Sabetti KJ, Robinson TJ, Laine ES.

Infect Control Hosp Epidemiol. 2018 Mar;39(3):336-338. doi: 10.1017/ice.2017.310. Epub 2018 Jan 24.

PMID:
29363440
19.

Understanding Complex Tribofilms by Means of H3BO3-B2O3 Model Glasses.

Spadaro F, Rossi A, Ramakrishna SN, Lainé E, Woodward P, Spencer ND.

Langmuir. 2018 Feb 13;34(6):2219-2234. doi: 10.1021/acs.langmuir.7b01795. Epub 2018 Jan 30.

PMID:
29334611
20.

INTerface Builder: A Fast Protein-Protein Interface Reconstruction Tool.

Dequeker C, Laine E, Carbone A.

J Chem Inf Model. 2017 Nov 27;57(11):2613-2617. doi: 10.1021/acs.jcim.7b00360. Epub 2017 Oct 19.

PMID:
28991473
21.

Functional characterization of the pinoresinol-lariciresinol reductase-2 gene reveals its roles in yatein biosynthesis and flax defense response.

Corbin C, Drouet S, Mateljak I, Markulin L, Decourtil C, Renouard S, Lopez T, Doussot J, Lamblin F, Auguin D, Lainé E, Fuss E, Hano C.

Planta. 2017 Sep;246(3):405-420. doi: 10.1007/s00425-017-2701-0. Epub 2017 Apr 27.

PMID:
28451749
22.

JET2 Viewer: a database of predicted multiple, possibly overlapping, protein-protein interaction sites for PDB structures.

Ripoche H, Laine E, Ceres N, Carbone A.

Nucleic Acids Res. 2017 Apr 20;45(7):4278. doi: 10.1093/nar/gkw1269. No abstract available.

23.

JET2 Viewer: a database of predicted multiple, possibly overlapping, protein-protein interaction sites for PDB structures.

Ripoche H, Laine E, Ceres N, Carbone A.

Nucleic Acids Res. 2017 Jan 4;45(D1):D236-D242. doi: 10.1093/nar/gkw1053. Epub 2016 Nov 28. Erratum in: Nucleic Acids Res. 2017 Apr 20;45(7):4278.

24.

Protein social behavior makes a stronger signal for partner identification than surface geometry.

Laine E, Carbone A.

Proteins. 2017 Jan;85(1):137-154. doi: 10.1002/prot.25206. Epub 2016 Nov 20.

25.

Investigation of the Lignan Content in Extracts from Linum, Callitris and Juniperus Species in Relation to Their In Vitro Antiproliferative Activities.

Doussot J, Mathieu V, Colas C, Molinié R, Corbin C, Montguillon J, Moreno Y Banuls L, Renouard S, Lamblin F, Dupré P, Maunit B, Kiss R, Hano C, Lainé E.

Planta Med. 2017 Apr;83(6):574-581. doi: 10.1055/s-0042-118650. Epub 2016 Oct 24.

PMID:
27776375
26.

Tma108, a putative M1 aminopeptidase, is a specific nascent chain-associated protein in Saccharomyces cerevisiae.

Delaveau T, Davoine D, Jolly A, Vallot A, Rouvière JO, Gerber A, Brochet S, Plessis M, Roquigny R, Merhej J, Leger T, Garcia C, Lelandais G, Laine E, Palancade B, Devaux F, Garcia M.

Nucleic Acids Res. 2016 Oct 14;44(18):8826-8841. Epub 2016 Aug 31.

27.

Coevolution analysis of Hepatitis C virus genome to identify the structural and functional dependency network of viral proteins.

Champeimont R, Laine E, Hu SW, Penin F, Carbone A.

Sci Rep. 2016 May 20;6:26401. doi: 10.1038/srep26401.

28.

Dissecting protein architecture with communication blocks and communicating segment pairs.

Karami Y, Laine E, Carbone A.

BMC Bioinformatics. 2016 Jan 20;17 Suppl 2:13. doi: 10.1186/s12859-015-0855-y.

29.

Local Geometry and Evolutionary Conservation of Protein Surfaces Reveal the Multiple Recognition Patches in Protein-Protein Interactions.

Laine E, Carbone A.

PLoS Comput Biol. 2015 Dec 21;11(12):e1004580. doi: 10.1371/journal.pcbi.1004580. eCollection 2015 Dec.

30.

Development and validation of an efficient ultrasound assisted extraction of phenolic compounds from flax (Linum usitatissimum L.) seeds.

Corbin C, Fidel T, Leclerc EA, Barakzoy E, Sagot N, Falguiéres A, Renouard S, Blondeau JP, Ferroud C, Doussot J, Lainé E, Hano C.

Ultrason Sonochem. 2015 Sep;26:176-185. doi: 10.1016/j.ultsonch.2015.02.008. Epub 2015 Feb 28.

PMID:
25753491
31.

Legal Authority for Infectious Disease Reporting in the United States: Case Study of the 2009 H1N1 Influenza Pandemic.

Danila RN, Laine ES, Livingston F, Como-Sabetti K, Lamers L, Johnson K, Barry AM.

Am J Public Health. 2015 Jan;105(1):13-18.

32.

Genetic evidence of a precisely tuned dysregulation in the hypoxia signaling pathway during oncogenesis.

Couvé S, Ladroue C, Laine E, Mahtouk K, Guégan J, Gad S, Le Jeune H, Le Gentil M, Nuel G, Kim WY, Lecomte B, Pagès JC, Collin C, Lasne F, Benusiglio PR, Bressac-de Paillerets B, Feunteun J, Lazar V, Gimenez-Roqueplo AP, Mazure NM, Dessen P, Tchertanov L, Mole DR, Kaelin W, Ratcliffe P, Richard S, Gardie B.

Cancer Res. 2014 Nov 15;74(22):6554-64. doi: 10.1158/0008-5472.CAN-14-1161. Epub 2014 Nov 4.

33.

Allosteric pathway identification through network analysis: from molecular dynamics simulations to interactive 2D and 3D graphs.

Allain A, Chauvot de Beauchêne I, Langenfeld F, Guarracino Y, Laine E, Tchertanov L.

Faraday Discuss. 2014;169:303-21. doi: 10.1039/c4fd00024b. Epub 2014 May 30.

PMID:
25340971
34.

Hotspot mutations in KIT receptor differentially modulate its allosterically coupled conformational dynamics: impact on activation and drug sensitivity.

Chauvot de Beauchêne I, Allain A, Panel N, Laine E, Trouvé A, Dubreuil P, Tchertanov L.

PLoS Comput Biol. 2014 Jul 31;10(7):e1003749. doi: 10.1371/journal.pcbi.1003749. eCollection 2014 Jul.

35.

RNAi-mediated pinoresinol lariciresinol reductase gene silencing in flax (Linum usitatissimum L.) seed coat: consequences on lignans and neolignans accumulation.

Renouard S, Tribalatc MA, Lamblin F, Mongelard G, Fliniaux O, Corbin C, Marosevic D, Pilard S, Demailly H, Gutierrez L, Hano C, Mesnard F, Lainé E.

J Plant Physiol. 2014 Sep 15;171(15):1372-7. doi: 10.1016/j.jplph.2014.06.005. Epub 2014 Jun 23.

PMID:
25046758
36.

How to lessen the risk of dental malpractice.

Laine EE.

Pa Dent J (Harrisb). 2014 Mar-Apr;81(2):22-5. No abstract available.

PMID:
24979966
37.

[Screening for chronic obstructive pulmonary disease by electronic mini-spirometry in general practice].

Vorilhon P, Deat J, Gérard A, Laine E, Laporte C, Ruivard M, Vaillant Roussel H.

Rev Mal Respir. 2014 May;31(5):396-403. doi: 10.1016/j.rmr.2013.09.003. Epub 2013 Oct 8. French.

38.

Differential effects of CSF-1R D802V and KIT D816V homologous mutations on receptor tertiary structure and allosteric communication.

Da Silva Figueiredo Celestino Gomes P, Panel N, Laine E, Pascutti PG, Solary E, Tchertanov L.

PLoS One. 2014 May 14;9(5):e97519. doi: 10.1371/journal.pone.0097519. eCollection 2014.

39.

Nonlocal memory effects allow perfect teleportation with mixed states.

Laine EM, Breuer HP, Piilo J.

Sci Rep. 2014 Apr 9;4:4620. doi: 10.1038/srep04620.

40.

Microwave-assisted extraction of herbacetin diglucoside from flax (Linum usitatissimum L.) seed cakes and its quantification using an RP-HPLC-UV system.

Fliniaux O, Corbin C, Ramsay A, Renouard S, Beejmohun V, Doussot J, Falguières A, Ferroud C, Lamblin F, Lainé E, Roscher A, Grand E, Mesnard F, Hano C.

Molecules. 2014 Mar 10;19(3):3025-37. doi: 10.3390/molecules19033025.

41.

Protein-protein interactions in a crowded environment: an analysis via cross-docking simulations and evolutionary information.

Lopes A, Sacquin-Mora S, Dimitrova V, Laine E, Ponty Y, Carbone A.

PLoS Comput Biol. 2013;9(12):e1003369. doi: 10.1371/journal.pcbi.1003369. Epub 2013 Dec 5.

42.

Raltegravir flexibility and its impact on recognition by the HIV-1 IN targets.

Arora R, de Beauchene IC, Polanski J, Laine E, Tchertanov L.

J Mol Recognit. 2013 Sep;26(9):383-401. doi: 10.1002/jmr.2277.

PMID:
23836466
43.

Role of protein farnesylation events in the ABA-mediated regulation of the Pinoresinol-Lariciresinol Reductase 1 (LuPLR1) gene expression and lignan biosynthesis in flax (Linum usitatissimum L.).

Corbin C, Decourtil C, Marosevic D, Bailly M, Lopez T, Renouard S, Doussot J, Dutilleul C, Auguin D, Giglioli-Guivarc'h N, Lainé E, Lamblin F, Hano C.

Plant Physiol Biochem. 2013 Nov;72:96-111. doi: 10.1016/j.plaphy.2013.06.001. Epub 2013 Jun 15.

PMID:
23816064
44.

Flaxseed (Linum usitatissimum L.) extract as well as (+)-secoisolariciresinol diglucoside and its mammalian derivatives are potent inhibitors of α-amylase activity.

Hano C, Renouard S, Molinié R, Corbin C, Barakzoy E, Doussot J, Lamblin F, Lainé E.

Bioorg Med Chem Lett. 2013 May 15;23(10):3007-12. doi: 10.1016/j.bmcl.2013.03.029. Epub 2013 Mar 16.

PMID:
23583514
45.

Identification and characterization of cis-acting elements involved in the regulation of ABA- and/or GA-mediated LuPLR1 gene expression and lignan biosynthesis in flax (Linum usitatissimum L.) cell cultures.

Corbin C, Renouard S, Lopez T, Lamblin F, Lainé E, Hano C.

J Plant Physiol. 2013 Mar 15;170(5):516-22. doi: 10.1016/j.jplph.2012.11.003. Epub 2012 Dec 27.

PMID:
23273926
46.

Molecular motions as a drug target: mechanistic simulations of anthrax toxin edema factor function led to the discovery of novel allosteric inhibitors.

Laine E, Martínez L, Ladant D, Malliavin T, Blondel A.

Toxins (Basel). 2012 Aug;4(8):580-604. Epub 2012 Jul 31. Review.

47.

Nonlocal memory effects in the dynamics of open quantum systems.

Laine EM, Breuer HP, Piilo J, Li CF, Guo GC.

Phys Rev Lett. 2012 May 25;108(21):210402. Epub 2012 May 22. Erratum in: Phys Rev Lett. 2013 Nov 27;111(22):229901.

PMID:
23003222
48.

Allosteric communication across the native and mutated KIT receptor tyrosine kinase.

Laine E, Auclair C, Tchertanov L.

PLoS Comput Biol. 2012;8(8):e1002661. doi: 10.1371/journal.pcbi.1002661. Epub 2012 Aug 23.

49.

In Silico and In Vitro Comparison of HIV-1 Subtypes B and CRF02_AG Integrases Susceptibility to Integrase Strand Transfer Inhibitors.

Ni X, Abdel-Azeim S, Laine E, Arora R, Osemwota O, Marcelin AG, Calvez V, Mouscadet JF, Tchertanov L.

Adv Virol. 2012;2012:548657. doi: 10.1155/2012/548657. Epub 2012 Jul 5.

50.

Differential role of calmodulin and calcium ions in the stabilization of the catalytic domain of adenyl cyclase CyaA from Bordetella pertussis.

Selwa E, Laine E, Malliavin TE.

Proteins. 2012 Apr;80(4):1028-40. doi: 10.1002/prot.24005. Epub 2012 Jan 9.

PMID:
22231172

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