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Metagenomic and culturomic analysis of gut microbiota dysbiosis during Clostridium difficile infection.

Amrane S, Hocquart M, Afouda P, Kuete E, Pham TP, Dione N, Ngom II, Valles C, Bachar D, Raoult D, Lagier JC.

Sci Rep. 2019 Sep 5;9(1):12807. doi: 10.1038/s41598-019-49189-8.


Brachybacterium massiliense sp. nov., a new bacterium isolated from stool from a healthy Senegalese child.

Mekhalif F, Tidjani Alou M, Zgheib R, Lo CI, Fournier PE, Raoult D, Lagier JC.

New Microbes New Infect. 2019 Jul 18;31:100588. doi: 10.1016/j.nmni.2019.100588. eCollection 2019 Sep.


Corynebacterium senegalense sp. nov. and Arthrobacter senegalensis sp. nov., two new Actinobacteria isolated from skin swab from the palm of hand.

Ndiaye C, Fall NS, Kuete E, Lo CI, Raoult D, Sokhna C, Lagier JC.

New Microbes New Infect. 2019 Jun 28;31:100583. doi: 10.1016/j.nmni.2019.100583. eCollection 2019 Sep.


Post-traumatic orbitorrhea: An underestimated life-threatening complication following anterior skull base fractures.

Martel A, Bougaci N, Lagier J, Almairac F, Dagain A.

Eur J Ophthalmol. 2019 Aug 2:1120672119867827. doi: 10.1177/1120672119867827. [Epub ahead of print]


Arcanobacterium ihumii sp. nov., Varibaculum vaginae sp. nov. and Tessaracoccus timonensis sp. nov., isolated from vaginal swabs from healthy Senegalese women.

Fall NS, Lo CI, Fournier PE, Sokhna C, Raoult D, Fenollar F, Lagier JC.

New Microbes New Infect. 2019 Jul 3;31:100585. doi: 10.1016/j.nmni.2019.100585. eCollection 2019 Sep.


Among Live and Dead Bacteria, the Optimization of Sample Collection and Processing Remains Essential in Recovering Gut Microbiota Components.

Bellali S, Lagier JC, Raoult D, Bou Khalil J.

Front Microbiol. 2019 Jul 10;10:1606. doi: 10.3389/fmicb.2019.01606. eCollection 2019.


Image Gallery: Atypical rash in an HIV-infected woman.

Mailhe M, Tissot-Dupont H, Lagier JC.

Br J Dermatol. 2019 Jul 25. doi: 10.1111/bjd.18242. [Epub ahead of print] No abstract available.


Bouillabaisse or Fish soup: The Limitations of Meta-Analysis confronted to the Inconsistency of Fecal Microbiota Transplantation Studies.

Lagier JC, Million M, Raoult D.

Clin Infect Dis. 2019 Jul 25. pii: ciz707. doi: 10.1093/cid/ciz707. [Epub ahead of print] No abstract available.


Passive filtration, rapid scanning electron microscopy and MALDI-TOF MS for Treponema culture and identification from the oral cavity.

Belkacemi S, Boukhalil J, Ominami Y, Hisada A, Fontanini A, Caputo A, Levasseur A, Lagier JC, Khelaifia S, Raoult D.

J Clin Microbiol. 2019 Jul 24. pii: JCM.00517-19. doi: 10.1128/JCM.00517-19. [Epub ahead of print]


Lysinibacillus timonensis sp. nov., Microbacterium timonense sp. nov., and Erwinia mediterraneensis sp. nov., three new species isolated from the human skin.

Ndiaye C, Lo CI, Bassene H, Raoult D, Lagier JC, Sokhna C.

New Microbes New Infect. 2019 Jun 20;31:100579. doi: 10.1016/j.nmni.2019.100579. eCollection 2019 Sep.


Capnocytophaga sputigena: An unusual cause of community-acquired pneumonia.

Gosse L, Amrane S, Mailhe M, Dubourg G, Lagier JC.

IDCases. 2019 Jun 11;17:e00572. doi: 10.1016/j.idcr.2019.e00572. eCollection 2019.


Culturomics provides critical prokaryote strains for anti-Listeria and anti-cancer probiotics.

Lagier JC, Million M, Togo AH, Khelaifia S, Raoult D.

Int J Antimicrob Agents. 2019 Jun 6. pii: S0924-8579(19)30134-7. doi: 10.1016/j.ijantimicag.2019.05.017. [Epub ahead of print] No abstract available.


[Orbital exenteration of tumoral origin].

De Faria A, Alketbi M, Podeur P, Lagier J, Martel A.

J Fr Ophtalmol. 2019 Jun;42(6):678-680. doi: 10.1016/j.jfo.2018.11.006. Epub 2019 Apr 23. French. No abstract available.


Repertoire of human breast and milk microbiota: a systematic review.

Togo A, Dufour JC, Lagier JC, Dubourg G, Raoult D, Million M.

Future Microbiol. 2019 May;14:623-641. doi: 10.2217/fmb-2018-0317. Epub 2019 Apr 26.


Feasibility, Acceptability, and Accuracy of Vaginal Self-Sampling for Screening Human Papillomavirus Types in Women from Rural Areas in Senegal.

Fall NS, Tamalet C, Diagne N, Fenollar F, Raoult D, Sokhna C, Lagier JC.

Am J Trop Med Hyg. 2019 Jun;100(6):1552-1555. doi: 10.4269/ajtmh.19-0045.


Isolation and culture of Methanobrevibacter smithii by co-culture with hydrogen-producing bacteria on agar plates.

Traore SI, Khelaifia S, Armstrong N, Lagier JC, Raoult D.

Clin Microbiol Infect. 2019 Apr 12. pii: S1198-743X(19)30160-0. doi: 10.1016/j.cmi.2019.04.008. [Epub ahead of print]


[Management of an c or scratch].

Melenotte C, Lagier JC.

Rev Prat. 2019 Mar;69(3):324-327. French. No abstract available.


Measles from Madagascar.

Mortier C, Mailhe M, Amrane S, Lagier JC.

Travel Med Infect Dis. 2019 May - Jun;29:58-59. doi: 10.1016/j.tmaid.2019.04.003. Epub 2019 Apr 5. No abstract available.


Failure of metagenomics in detecting emerging pathogens, the Clostridium difficile paradigm.

Amrane S, Lagier JC, Raoult D.

J Infect. 2019 May;78(5):409-421. doi: 10.1016/j.jinf.2019.02.014. Epub 2019 Mar 4. No abstract available.


Description and genomic characterization of Massiliimalia massiliensis gen. nov., sp. nov., and Massiliimalia timonensis gen. nov., sp. nov., two new members of the family Ruminococcaceae isolated from the human gut.

Afouda P, Traore SI, Dione N, Andrieu C, Tomei E, Richez M, Di Pinto F, Lagier JC, Dubourg G, Raoult D, Fournier PE.

Antonie Van Leeuwenhoek. 2019 Jun;112(6):905-918. doi: 10.1007/s10482-018-01223-x. Epub 2019 Jan 28.


West Nile virus outbreak in the South of France: Implications for travel medicine.

Eldin C, Mailhe M, Zandotti C, Grard G, Galla M, Parola P, Brouqui P, Lagier JC.

Travel Med Infect Dis. 2019 Mar - Apr;28:100-101. doi: 10.1016/j.tmaid.2019.01.002. Epub 2019 Jan 7. No abstract available.


Oceanobacillus timonensis sp. nov. and Oceanobacillus senegalensis sp. nov., two new moderately halophilic, Gram-stain positive bacteria isolated from stools sample of healthy young Senegalese.

Senghor B, Bassène H, Khelaifia S, Robert C, Fournier PE, Ruimy R, Sokhna C, Raoult D, Lagier JC.

Antonie Van Leeuwenhoek. 2019 May;112(5):785-796. doi: 10.1007/s10482-018-01212-0. Epub 2018 Dec 15.


Asymptomatic carriage of Streptococcus pneumoniae detected by qPCR on the palm of hands of populations in rural Senegal.

Ndiaye C, Bassene H, Lagier JC, Raoult D, Sokhna C.

PLoS Negl Trop Dis. 2018 Dec 10;12(12):e0006945. doi: 10.1371/journal.pntd.0006945. eCollection 2018 Dec.


Faecal microbiota transplantation shortens the colonisation period and allows re-entry of patients carrying carbapenamase-producing bacteria into medical care facilities.

Saïdani N, Lagier JC, Cassir N, Million M, Baron S, Dubourg G, Eldin C, Kerbaj J, Valles C, Raoult D, Brouqui P.

Int J Antimicrob Agents. 2019 Apr;53(4):355-361. doi: 10.1016/j.ijantimicag.2018.11.014. Epub 2018 Nov 23.


Human Bacterial Repertoire of the Urinary Tract: a Potential Paradigm Shift.

Morand A, Cornu F, Dufour JC, Tsimaratos M, Lagier JC, Raoult D.

J Clin Microbiol. 2019 Feb 27;57(3). pii: e00675-18. doi: 10.1128/JCM.00675-18. Print 2019 Mar. Review.


Naming microorganisms: the contribution of the IHU Méditerranée Infection, Marseille, France.

Lagier JC, Bilen M, Cadoret F, Drancourt M, Fournier PE, La Scola B, Raoult D.

New Microbes New Infect. 2018 Aug 11;26:S89-S95. doi: 10.1016/j.nmni.2018.08.006. eCollection 2018 Nov.


Repertoire of the gut microbiota from stomach to colon using culturomics and next-generation sequencing.

Mailhe M, Ricaboni D, Vitton V, Gonzalez JM, Bachar D, Dubourg G, Cadoret F, Robert C, Delerce J, Levasseur A, Fournier PE, Angelakis E, Lagier JC, Raoult D.

BMC Microbiol. 2018 Oct 24;18(1):157. doi: 10.1186/s12866-018-1304-7.


Whipple's disease and Tropheryma whipplei infections: when to suspect them and how to diagnose and treat them.

Lagier JC, Raoult D.

Curr Opin Infect Dis. 2018 Dec;31(6):463-470. doi: 10.1097/QCO.0000000000000489.


Noncontiguous finished genome sequences and description of Bacteroides mediterraneensis sp. nov., Bacteroides ihuae sp. nov., Bacteroides togonis sp. nov., Bacteroides ndongoniae sp. nov., Bacteroides ilei sp. nov. and Bacteroides congonensis sp. nov. identified by culturomics.

Andrieu C, Mailhe M, Ricaboni D, Fonkou MDM, Bilen M, Cadoret F, Tomei E, Armstrong N, Vitton V, Benezech A, Davoust B, Levasseur A, Lagier JC, Fournier PE, Raoult D.

New Microbes New Infect. 2018 Jun 21;26:73-88. doi: 10.1016/j.nmni.2018.06.006. eCollection 2018 Nov.


Salt in stools is associated with obesity, gut halophilic microbiota and Akkermansia muciniphila depletion in humans.

Seck EH, Senghor B, Merhej V, Bachar D, Cadoret F, Robert C, Azhar EI, Yasir M, Bibi F, Jiman-Fatani AA, Konate DS, Musso D, Doumbo O, Sokhna C, Levasseur A, Lagier JC, Khelaifia S, Million M, Raoult D.

Int J Obes (Lond). 2019 Apr;43(4):862-871. doi: 10.1038/s41366-018-0201-3. Epub 2018 Sep 11.


From Culturomics to Clinical Microbiology and Forward.

Dubourg G, Baron S, Cadoret F, Couderc C, Fournier PE, Lagier JC, Raoult D.

Emerg Infect Dis. 2018 Sep;24(9):1683-1690. doi: 10.3201/eid2409.170995.


Mesenteric lymphadenitis as a presenting feature of Whipple's disease: Value of PCR analysis.

Wartique L, Lagier JC, Raoult D, Jamilloux Y, Sève P.

Int J Infect Dis. 2018 Oct;75:15-17. doi: 10.1016/j.ijid.2018.08.003. Epub 2018 Aug 7.


Bacterial Cocktail to Treat Clostridium difficile Infection: Primum Non Nocere.

Million M, Lagier JC, Chaudet H, Raoult D.

Clin Infect Dis. 2018 Nov 13;67(11):1799. doi: 10.1093/cid/ciy459. No abstract available.


'Helcococcus massiliensis' sp. nov., a new bacterial species isolated from the vaginal sample of a woman with bacterial vaginosis living in Dielmo, Senegal.

Fall NS, Raoult D, Sokhna C, Lagier JC.

New Microbes New Infect. 2018 Jun 12;25:27-29. doi: 10.1016/j.nmni.2018.06.002. eCollection 2018 Sep.


Limbic encephalitis as a relapse of Whipple's disease with digestive involvement and spondylodiscitis.

Brönnimann D, Vareil MO, Sibon I, Lagier JC, Lepidi H, Puges M, Haneche F, Raoult D, Desclaux A, Neau D, Cazanave C.

Infection. 2019 Aug;47(4):637-641. doi: 10.1007/s15010-018-1173-x. Epub 2018 Jul 10.


Anaerococcus jeddahensis sp. nov., a New Bacterial Species Isolated From Healthy Nomadic Bedouin Woman From Saudi Arabia.

Dione N, Bellali S, Yasir M, Azhar EI, Bibi F, Beye M, Armstrong N, Cadoret F, Jiman-Fatani AA, Helmy N, Rathored J, Labas N, Fournier PE, Raoult D, Lagier JC.

Curr Microbiol. 2018 Nov;75(11):1419-1428. doi: 10.1007/s00284-018-1538-5. Epub 2018 Jul 7.


Culturing the human microbiota and culturomics.

Lagier JC, Dubourg G, Million M, Cadoret F, Bilen M, Fenollar F, Levasseur A, Rolain JM, Fournier PE, Raoult D.

Nat Rev Microbiol. 2018 May 1:540-550. doi: 10.1038/s41579-018-0041-0. Review.


Genome sequence and description of Clostridium niameyense sp. nov., isolated from a human with marasmus in Nigeria.

Chabou S, Tidjani Alou M, Khelaifia S, Lagier JC, Labas N, Cimmino T, Diene S, Raoult D, Rolain JM.

New Microbes New Infect. 2018 Mar 14;24:26-31. doi: 10.1016/j.nmni.2018.03.001. eCollection 2018 Jul.


Eggerthella timonensis sp. nov, a new species isolated from the stool sample of a pygmy female.

Bilen M, Fonkou MDM, Tomei E, Armstrong N, Bittar F, Lagier JC, Daoud Z, Fournier PE, Raoult D, Cadoret F.

Microbiologyopen. 2018 Oct;7(5):e00575. doi: 10.1002/mbo3.575. Epub 2018 Jun 13.


Draft Genome and Description of Eisenbergiella massiliensis Strain AT11T: A New Species Isolated from Human Feces After Bariatric Surgery.

Togo AH, Diop A, Million M, Maraninchi M, Lagier JC, Robert C, Di Pinto F, Raoult D, Fournier PE, Bittar F.

Curr Microbiol. 2018 Oct;75(10):1274-1281. doi: 10.1007/s00284-018-1520-2. Epub 2018 Jun 1.


The contribution of culturomics to the repertoire of isolated human bacterial and archaeal species.

Bilen M, Dufour JC, Lagier JC, Cadoret F, Daoud Z, Dubourg G, Raoult D.

Microbiome. 2018 May 24;6(1):94. doi: 10.1186/s40168-018-0485-5. Review.


Halophilic & halotolerant prokaryotes in humans.

Seck EH, Dufour JC, Raoult D, Lagier JC.

Future Microbiol. 2018 Jun 1;13:799-812. doi: 10.2217/fmb-2017-0237. Epub 2018 May 4. Review.


'Citricoccus massiliensis' sp. nov., a new bacterial species isolated from human skin by culturomics.

Ndiaye C, Bassène H, Cadoret F, Raoult D, Lagier JC, Sokhna C.

New Microbes New Infect. 2018 Feb 17;23:83-85. doi: 10.1016/j.nmni.2018.02.004. eCollection 2018 May.


'Cellulomonas timonensis' sp. nov., taxonogenomics description of a new bacterial species isolated from human gut.

Ndongo S, Bittar F, Beye M, Robert C, Di Pinto F, Fournier PE, Raoult D, Lagier JC.

New Microbes New Infect. 2018 Feb 8;23:7-16. doi: 10.1016/j.nmni.2018.01.003. eCollection 2018 May.


Metagenomics, culturomics, and the human gut microbiota.

Amrane S, Raoult D, Lagier JC.

Expert Rev Anti Infect Ther. 2018 May;16(5):373-375. doi: 10.1080/14787210.2018.1467268. Epub 2018 Apr 23. No abstract available.


Noncontiguous finished genome sequence and description of Intestinimonas massiliensis sp. nov strain GD2T , the second Intestinimonas species cultured from the human gut.

Afouda P, Durand GA, Lagier JC, Labas N, Cadoret F, Armstrong N, Raoult D, Dubourg G.

Microbiologyopen. 2019 Jan;8(1):e00621. doi: 10.1002/mbo3.621. Epub 2018 Apr 14.


[Oculoplastic complications of the excision of meningiomas with orbital extension].

Stoll N, Paquis P, Lonjon M, Baillif S, Lagier J.

J Fr Ophtalmol. 2018 Mar;41(3):212-217. doi: 10.1016/j.jfo.2017.09.008. Epub 2018 Mar 21. French.


Gorillibacterium timonense sp. nov. and Vitreoscilla massiliensis sp. nov., two new bacterial species isolated from stool specimens of obese Amazonian patients.

Ndongo S, Lagier JC, Raoult D, Fournier PE.

New Microbes New Infect. 2018 Feb 22;23:48-51. doi: 10.1016/j.nmni.2018.02.005. eCollection 2018 May.


'Collinsella provencensis' sp. nov., 'Parabacteroides bouchesdurhonensis' sp. nov. and 'Sutterella seckii,' sp. nov., three new bacterial species identified from human gut microbiota.

Dione N, Ngom II, Valles C, Cadoret F, Fournier PE, Raoult D, Lagier JC.

New Microbes New Infect. 2018 Feb 22;23:44-47. doi: 10.1016/j.nmni.2018.02.003. eCollection 2018 May.


Koch Postulate: Why Should we Grow Bacteria?

Lagier JC, Dubourg G, Amrane S, Raoult D.

Arch Med Res. 2017 Nov;48(8):774-779. doi: 10.1016/j.arcmed.2018.02.003. Epub 2018 Mar 6. Review. No abstract available.


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