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Tanycytes Regulate Lipid Homeostasis by Sensing Free Fatty Acids and Signaling to Key Hypothalamic Neuronal Populations via FGF21 Secretion.

Geller S, Arribat Y, Netzahualcoyotzi C, Lagarrigue S, Carneiro L, Zhang L, Amati F, Lopez-Mejia IC, Pellerin L.

Cell Metab. 2019 Oct 1;30(4):833-844.e7. doi: 10.1016/j.cmet.2019.08.004. Epub 2019 Aug 29.


Maternal High-Protein and Low-Protein Diets Perturb Hypothalamus and Liver Transcriptome and Metabolic Homeostasis in Adult Mouse Offspring.

Martin LJ, Meng Q, Blencowe M, Lagarrigue S, Xiao S, Pan C, Wier J, Temple WC, Devaskar SU, Lusis AJ, Yang X.

Front Genet. 2018 Dec 11;9:642. doi: 10.3389/fgene.2018.00642. eCollection 2018.


Distinct patterns of skeletal muscle mitochondria fusion, fission and mitophagy upon duration of exercise training.

Arribat Y, Broskey NT, Greggio C, Boutant M, Conde Alonso S, Kulkarni SS, Lagarrigue S, Carnero EA, Besson C, Cantó C, Amati F.

Acta Physiol (Oxf). 2019 Feb;225(2):e13179. doi: 10.1111/apha.13179. Epub 2018 Sep 14.


Multi-tissue transcriptomic study reveals the main role of liver in the chicken adaptive response to a switch in dietary energy source through the transcriptional regulation of lipogenesis.

Desert C, Baéza E, Aite M, Boutin M, Le Cam A, Montfort J, Houee-Bigot M, Blum Y, Roux PF, Hennequet-Antier C, Berri C, Metayer-Coustard S, Collin A, Allais S, Le Bihan E, Causeur D, Gondret F, Duclos MJ, Lagarrigue S.

BMC Genomics. 2018 Mar 7;19(1):187. doi: 10.1186/s12864-018-4520-5.


CDK4 Phosphorylates AMPKα2 to Inhibit Its Activity and Repress Fatty Acid Oxidation.

Lopez-Mejia IC, Lagarrigue S, Giralt A, Martinez-Carreres L, Zanou N, Denechaud PD, Castillo-Armengol J, Chavey C, Orpinell M, Delacuisine B, Nasrallah A, Collodet C, Zhang L, Viollet B, Hardie DG, Fajas L.

Mol Cell. 2017 Oct 19;68(2):336-349.e6. doi: 10.1016/j.molcel.2017.09.034.


Role of cell cycle regulators in adipose tissue and whole body energy homeostasis.

Lopez-Mejia IC, Castillo-Armengol J, Lagarrigue S, Fajas L.

Cell Mol Life Sci. 2018 Mar;75(6):975-987. doi: 10.1007/s00018-017-2668-9. Epub 2017 Oct 7. Review.


Muscle transcriptome analysis reveals molecular pathways and biomarkers involved in extreme ultimate pH and meat defect occurrence in chicken.

Beauclercq S, Hennequet-Antier C, Praud C, Godet E, Collin A, Tesseraud S, Métayer-Coustard S, Bourin M, Moroldo M, Martins F, Lagarrigue S, Bihan-Duval EL, Berri C.

Sci Rep. 2017 Jul 25;7(1):6447. doi: 10.1038/s41598-017-06511-6.


A transcriptome multi-tissue analysis identifies biological pathways and genes associated with variations in feed efficiency of growing pigs.

Gondret F, Vincent A, Houée-Bigot M, Siegel A, Lagarrigue S, Causeur D, Gilbert H, Louveau I.

BMC Genomics. 2017 Mar 21;18(1):244. doi: 10.1186/s12864-017-3639-0.


Long noncoding RNA repertoire in chicken liver and adipose tissue.

Muret K, Klopp C, Wucher V, Esquerré D, Legeai F, Lecerf F, Désert C, Boutin M, Jehl F, Acloque H, Giuffra E, Djebali S, Foissac S, Derrien T, Lagarrigue S.

Genet Sel Evol. 2017 Jan 10;49(1):6. doi: 10.1186/s12711-016-0275-0.


Enhanced Respiratory Chain Supercomplex Formation in Response to Exercise in Human Skeletal Muscle.

Greggio C, Jha P, Kulkarni SS, Lagarrigue S, Broskey NT, Boutant M, Wang X, Conde Alonso S, Ofori E, Auwerx J, Cantó C, Amati F.

Cell Metab. 2017 Feb 7;25(2):301-311. doi: 10.1016/j.cmet.2016.11.004. Epub 2016 Dec 1.


Transcriptomes of whole blood and PBMC in chickens.

Désert C, Merlot E, Zerjal T, Bed'hom B, Härtle S, Le Cam A, Roux PF, Baeza E, Gondret F, Duclos MJ, Lagarrigue S.

Comp Biochem Physiol Part D Genomics Proteomics. 2016 Dec;20:1-9. doi: 10.1016/j.cbd.2016.06.008. Epub 2016 Jun 27.


Thermal manipulation of the chicken embryo triggers differential gene expression in response to a later heat challenge.

Loyau T, Hennequet-Antier C, Coustham V, Berri C, Leduc M, Crochet S, Sannier M, Duclos MJ, Mignon-Grasteau S, Tesseraud S, Brionne A, Métayer-Coustard S, Moroldo M, Lecardonnel J, Martin P, Lagarrigue S, Yahav S, Collin A.

BMC Genomics. 2016 May 4;17:329. doi: 10.1186/s12864-016-2661-y.


Erratum: Hepatic circadian clock oscillators and nuclear receptors integrate microbiome-derived signals.

Montagner A, Korecka A, Polizzi A, Lippi Y, Blum Y, Canlet C, Tremblay-Franco M, Gautier-Stein A, Burcelin R, Yen YC, Je HS, Al-Asmakh M, Mithieux G, Arulampalam V, Lagarrigue S, Guillou H, Pettersson S, Wahli W.

Sci Rep. 2016 Apr 20;6:23951. doi: 10.1038/srep23951. No abstract available.


Molecular alterations induced by a high-fat high-fiber diet in porcine adipose tissues: variations according to the anatomical fat location.

Gondret F, Vincent A, Houée-Bigot M, Siegel A, Lagarrigue S, Louveau I, Causeur D.

BMC Genomics. 2016 Feb 18;17:120. doi: 10.1186/s12864-016-2438-3.


Hepatic circadian clock oscillators and nuclear receptors integrate microbiome-derived signals.

Montagner A, Korecka A, Polizzi A, Lippi Y, Blum Y, Canlet C, Tremblay-Franco M, Gautier-Stein A, Burcelin R, Yen YC, Je HS, Al-Asmakh M, Mithieux G, Arulampalam V, Lagarrigue S, Guillou H, Pettersson S, Wahli W.

Sci Rep. 2016 Feb 16;6:20127. doi: 10.1038/srep20127. Erratum in: Sci Rep. 2016;6:23951. Maha, Al-Asmakh [corrected to Al-Asmakh, Maha].


Liver PPARα is crucial for whole-body fatty acid homeostasis and is protective against NAFLD.

Montagner A, Polizzi A, Fouché E, Ducheix S, Lippi Y, Lasserre F, Barquissau V, Régnier M, Lukowicz C, Benhamed F, Iroz A, Bertrand-Michel J, Al Saati T, Cano P, Mselli-Lakhal L, Mithieux G, Rajas F, Lagarrigue S, Pineau T, Loiseau N, Postic C, Langin D, Wahli W, Guillou H.

Gut. 2016 Jul;65(7):1202-14. doi: 10.1136/gutjnl-2015-310798. Epub 2016 Feb 1.


CDK4 is an essential insulin effector in adipocytes.

Lagarrigue S, Lopez-Mejia IC, Denechaud PD, Escoté X, Castillo-Armengol J, Jimenez V, Chavey C, Giralt A, Lai Q, Zhang L, Martinez-Carreres L, Delacuisine B, Annicotte JS, Blanchet E, Huré S, Abella A, Tinahones FJ, Vendrell J, Dubus P, Bosch F, Kahn CR, Fajas L.

J Clin Invest. 2016 Jan;126(1):335-48. doi: 10.1172/JCI81480. Epub 2015 Dec 14.


The Extent of mRNA Editing Is Limited in Chicken Liver and Adipose, but Impacted by Tissular Context, Genotype, Age, and Feeding as Exemplified with a Conserved Edited Site in COG3.

Roux PF, Frésard L, Boutin M, Leroux S, Klopp C, Djari A, Esquerré D, Martin PG, Zerjal T, Gourichon D, Pitel F, Lagarrigue S.

G3 (Bethesda). 2015 Dec 4;6(2):321-35. doi: 10.1534/g3.115.022251.


Third Report on Chicken Genes and Chromosomes 2015.

Schmid M, Smith J, Burt DW, Aken BL, Antin PB, Archibald AL, Ashwell C, Blackshear PJ, Boschiero C, Brown CT, Burgess SC, Cheng HH, Chow W, Coble DJ, Cooksey A, Crooijmans RP, Damas J, Davis RV, de Koning DJ, Delany ME, Derrien T, Desta TT, Dunn IC, Dunn M, Ellegren H, Eöry L, Erb I, Farré M, Fasold M, Fleming D, Flicek P, Fowler KE, Frésard L, Froman DP, Garceau V, Gardner PP, Gheyas AA, Griffin DK, Groenen MA, Haaf T, Hanotte O, Hart A, Häsler J, Hedges SB, Hertel J, Howe K, Hubbard A, Hume DA, Kaiser P, Kedra D, Kemp SJ, Klopp C, Kniel KE, Kuo R, Lagarrigue S, Lamont SJ, Larkin DM, Lawal RA, Markland SM, McCarthy F, McCormack HA, McPherson MC, Motegi A, Muljo SA, Münsterberg A, Nag R, Nanda I, Neuberger M, Nitsche A, Notredame C, Noyes H, O'Connor R, O'Hare EA, Oler AJ, Ommeh SC, Pais H, Persia M, Pitel F, Preeyanon L, Prieto Barja P, Pritchett EM, Rhoads DD, Robinson CM, Romanov MN, Rothschild M, Roux PF, Schmidt CJ, Schneider AS, Schwartz MG, Searle SM, Skinner MA, Smith CA, Stadler PF, Steeves TE, Steinlein C, Sun L, Takata M, Ulitsky I, Wang Q, Wang Y, Warren WC, Wood JM, Wragg D, Zhou H.

Cytogenet Genome Res. 2015;145(2):78-179. doi: 10.1159/000430927. Epub 2015 Jul 14. No abstract available.


Genome-Wide Characterization of RNA Editing in Chicken Embryos Reveals Common Features among Vertebrates.

Frésard L, Leroux S, Roux PF, Klopp C, Fabre S, Esquerré D, Dehais P, Djari A, Gourichon D, Lagarrigue S, Pitel F.

PLoS One. 2015 May 29;10(5):e0126776. doi: 10.1371/journal.pone.0126776. eCollection 2015.


The ability of genetically lean or fat slow-growing chickens to synthesize and store lipids is not altered by the dietary energy source.

Baéza E, Gondret F, Chartrin P, Le Bihan-Duval E, Berri C, Gabriel I, Narcy A, Lessire M, Métayer-Coustard S, Collin A, Jégou M, Lagarrigue S, Duclos MJ.

Animal. 2015 Oct;9(10):1643-52. doi: 10.1017/S1751731115000683. Epub 2015 May 11.


Expanding Duplication of Free Fatty Acid Receptor-2 (GPR43) Genes in the Chicken Genome.

Meslin C, Desert C, Callebaut I, Djari A, Klopp C, Pitel F, Leroux S, Martin P, Froment P, Guilbert E, Gondret F, Lagarrigue S, Monget P.

Genome Biol Evol. 2015 Apr 24;7(5):1332-48. doi: 10.1093/gbe/evv072.


Combined QTL and selective sweep mappings with coding SNP annotation and cis-eQTL analysis revealed PARK2 and JAG2 as new candidate genes for adiposity regulation.

Roux PF, Boitard S, Blum Y, Parks B, Montagner A, Mouisel E, Djari A, Esquerré D, Désert C, Boutin M, Leroux S, Lecerf F, Le Bihan-Duval E, Klopp C, Servin B, Pitel F, Duclos MJ, Guillou H, Lusis AJ, Demeure O, Lagarrigue S.

G3 (Bethesda). 2015 Feb 3;5(4):517-29. doi: 10.1534/g3.115.016865.


Pertinent plasma indicators of the ability of chickens to synthesize and store lipids.

Baéza E, Jégou M, Gondret F, Lalande-Martin J, Tea I, Le Bihan-Duval E, Berri C, Collin A, Métayer-Coustard S, Louveau I, Lagarrigue S, Duclos MJ.

J Anim Sci. 2015 Jan;93(1):107-16. doi: 10.2527/jas.2014-8482.


Comparison of whole-genome (13X) and capture (87X) resequencing methods for SNP and genotype callings.

Roux PF, Marthey S, Djari A, Moroldo M, Esquerré D, Estellé J, Klopp C, Lagarrigue S, Demeure O.

Anim Genet. 2015 Feb;46(1):82-6. doi: 10.1111/age.12248. Epub 2014 Dec 16.


Re-sequencing data for refining candidate genes and polymorphisms in QTL regions affecting adiposity in chicken.

Roux PF, Boutin M, Désert C, Djari A, Esquerré D, Klopp C, Lagarrigue S, Demeure O.

PLoS One. 2014 Oct 21;9(10):e111299. doi: 10.1371/journal.pone.0111299. eCollection 2014.


Dietary energy sources affect the partition of body lipids and the hierarchy of energy metabolic pathways in growing pigs differing in feed efficiency.

Gondret F, Louveau I, Mourot J, Duclos MJ, Lagarrigue S, Gilbert H, van Milgen J.

J Anim Sci. 2014 Nov;92(11):4865-77. doi: 10.2527/jas.2014-7995. Epub 2014 Sep 24.


The loss of adipokine genes in the chicken genome and implications for insulin metabolism.

Daković N, Térézol M, Pitel F, Maillard V, Elis S, Leroux S, Lagarrigue S, Gondret F, Klopp C, Baeza E, Duclos MJ, Roest Crollius H, Monget P.

Mol Biol Evol. 2014 Oct;31(10):2637-46. doi: 10.1093/molbev/msu208. Epub 2014 Jul 10.


Using a large-scale knowledge database on reactions and regulations to propose key upstream regulators of various sets of molecules participating in cell metabolism.

Blavy P, Gondret F, Lagarrigue S, van Milgen J, Siegel A.

BMC Syst Biol. 2014 Mar 17;8:32. doi: 10.1186/1752-0509-8-32.


Transcriptome-wide investigation of genomic imprinting in chicken.

Frésard L, Leroux S, Servin B, Gourichon D, Dehais P, Cristobal MS, Marsaud N, Vignoles F, Bed'hom B, Coville JL, Hormozdiari F, Beaumont C, Zerjal T, Vignal A, Morisson M, Lagarrigue S, Pitel F.

Nucleic Acids Res. 2014 Apr;42(6):3768-82. doi: 10.1093/nar/gkt1390. Epub 2014 Jan 21.


Genome-wide interval mapping using SNPs identifies new QTL for growth, body composition and several physiological variables in an F2 intercross between fat and lean chicken lines.

Demeure O, Duclos MJ, Bacciu N, Le Mignon G, Filangi O, Pitel F, Boland A, Lagarrigue S, Cogburn LA, Simon J, Le Roy P, Le Bihan-Duval E.

Genet Sel Evol. 2013 Sep 30;45:36. doi: 10.1186/1297-9686-45-36.


Analysis of allele-specific expression in mouse liver by RNA-Seq: a comparison with Cis-eQTL identified using genetic linkage.

Lagarrigue S, Martin L, Hormozdiari F, Roux PF, Pan C, van Nas A, Demeure O, Cantor R, Ghazalpour A, Eskin E, Lusis AJ.

Genetics. 2013 Nov;195(3):1157-66. doi: 10.1534/genetics.113.153882. Epub 2013 Sep 11. Erratum in: Genetics. 2014 Apr;196(4):1359.


Limited RNA editing in exons of mouse liver and adipose.

Lagarrigue S, Hormozdiari F, Martin LJ, Lecerf F, Hasin Y, Rau C, Hagopian R, Xiao Y, Yan J, Drake TA, Ghazalpour A, Eskin E, Lusis AJ.

Genetics. 2013 Apr;193(4):1107-15. doi: 10.1534/genetics.112.149054. Epub 2013 Feb 14.


Pleiotropic effects of polymorphism of the gene diacylglycerol-O-transferase 1 (DGAT1) in the mammary gland tissue of dairy cows.

Mach N, Blum Y, Bannink A, Causeur D, Houee-Bigot M, Lagarrigue S, Smits MA.

J Dairy Sci. 2012 Sep;95(9):4989-5000. doi: 10.3168/jds.2012-5348.


In vivo quantification of epidermis pigmentation and dermis papilla density with reflectance confocal microscopy: variations with age and skin phototype.

Lagarrigue SG, George J, Questel E, Lauze C, Meyer N, Lagarde JM, Simon M, Schmitt AM, Serre G, Paul C.

Exp Dermatol. 2012 Apr;21(4):281-6. doi: 10.1111/j.1600-0625.2012.01451.x.


Complex trait subtypes identification using transcriptome profiling reveals an interaction between two QTL affecting adiposity in chicken.

Blum Y, Le Mignon G, Causeur D, Filangi O, Désert C, Demeure O, Le Roy P, Lagarrigue S.

BMC Genomics. 2011 Nov 21;12:567. doi: 10.1186/1471-2164-12-567.


E2F transcription factor-1 regulates oxidative metabolism.

Blanchet E, Annicotte JS, Lagarrigue S, Aguilar V, Clapé C, Chavey C, Fritz V, Casas F, Apparailly F, Auwerx J, Fajas L.

Nat Cell Biol. 2011 Aug 14;13(9):1146-52. doi: 10.1038/ncb2309.


Detection of a Cis [corrected] eQTL controlling BCMO1 gene expression leads to the identification of a QTG for chicken breast meat color.

Le Bihan-Duval E, Nadaf J, Berri C, Pitel F, Graulet B, Godet E, Leroux SY, Demeure O, Lagarrigue S, Duby C, Cogburn LA, Beaumont CM, Duclos MJ.

PLoS One. 2011;6(7):e14825. doi: 10.1371/journal.pone.0014825. Epub 2011 Jul 5. Erratum in: PLoS One. 2011;6(9). doi: 10.1371/annotation/17f0c1e7-7cca-4886-9f0b-3891ab2dc128.


E4F1 deficiency results in oxidative stress-mediated cell death of leukemic cells.

Hatchi E, Rodier G, Lacroix M, Caramel J, Kirsh O, Jacquet C, Schrepfer E, Lagarrigue S, Linares LK, Lledo G, Tondeur S, Dubus P, Sardet C, Le Cam L.

J Exp Med. 2011 Jul 4;208(7):1403-17. doi: 10.1084/jem.20101995. Epub 2011 Jun 27.


[Emerging key role of cell cycle regulators in cell metabolism].

Lagarrigue S, Blanchet É, Annicotte JS, Fajas L.

Med Sci (Paris). 2011 May;27(5):508-13. doi: 10.1051/medsci/2011275016. Epub 2011 May 25. Review. French.


AnnotQTL: a new tool to gather functional and comparative information on a genomic region.

Lecerf F, Bretaudeau A, Sallou O, Desert C, Blum Y, Lagarrigue S, Demeure O.

Nucleic Acids Res. 2011 Jul;39(Web Server issue):W328-33. doi: 10.1093/nar/gkr361. Epub 2011 May 19.


Regulation of LPCAT3 by LXR.

Demeure O, Lecerf F, Duby C, Desert C, Ducheix S, Guillou H, Lagarrigue S.

Gene. 2011 Jan 1;470(1-2):7-11. doi: 10.1016/j.gene.2010.09.002. Epub 2010 Sep 15.


A factor model to analyze heterogeneity in gene expression.

Blum Y, Le Mignon G, Lagarrigue S, Causeur D.

BMC Bioinformatics. 2010 Jul 2;11:368. doi: 10.1186/1471-2105-11-368.


Using transcriptome profiling to characterize QTL regions on chicken chromosome 5.

Le Mignon G, Désert C, Pitel F, Leroux S, Demeure O, Guernec G, Abasht B, Douaire M, Le Roy P, Lagarrigue S.

BMC Genomics. 2009 Dec 2;10:575. doi: 10.1186/1471-2164-10-575.


Liver X receptor alpha regulates fatty acid synthase expression in chicken.

Demeure O, Duby C, Desert C, Assaf S, Hazard D, Guillou H, Lagarrigue S.

Poult Sci. 2009 Dec;88(12):2628-35. doi: 10.3382/ps.2009-00258.


A minimal model for hepatic fatty acid balance during fasting: application to PPAR alpha-deficient mice.

Blavy P, Gondret F, Guillou H, Lagarrigue S, Martin PG, van Milgen J, Radulescu O, Siegel A.

J Theor Biol. 2009 Nov 21;261(2):266-78. doi: 10.1016/j.jtbi.2009.07.025. Epub 2009 Jul 25.


Methods for interpreting lists of affected genes obtained in a DNA microarray experiment.

Hedegaard J, Arce C, Bicciato S, Bonnet A, Buitenhuis B, Collado-Romero M, Conley LN, SanCristobal M, Ferrari F, Garrido JJ, Groenen MA, Hornshøj H, Hulsegge I, Jiang L, Jiménez-Marín Á, Kommadath A, Lagarrigue S, Leunissen JA, Liaubet L, Neerincx PB, Nie H, Poel JV, Prickett D, Ramirez-Boo M, Rebel JM, Robert-Granié C, Skarman A, Smits MA, Sørensen P, Tosser-Klopp G, Watson M.

BMC Proc. 2009 Jul 16;3 Suppl 4:S5.


sigReannot: an oligo-set re-annotation pipeline based on similarities with the Ensembl transcripts and Unigene clusters.

Casel P, Moreews F, Lagarrigue S, Klopp C.

BMC Proc. 2009 Jul 16;3 Suppl 4:S3. doi: 10.1186/1753-6561-3-S4-S3.


Pathway results from the chicken data set using GOTM, Pathway Studio and Ingenuity softwares.

Bonnet A, Lagarrigue S, Liaubet L, Robert-Granié C, Sancristobal M, Tosser-Klopp G.

BMC Proc. 2009 Jul 16;3 Suppl 4:S11. doi: 10.1186/1753-6561-3-S4-S11.


CXC ligand 5 is an adipose-tissue derived factor that links obesity to insulin resistance.

Chavey C, Lazennec G, Lagarrigue S, Clapé C, Iankova I, Teyssier J, Annicotte JS, Schmidt J, Mataki C, Yamamoto H, Sanches R, Guma A, Stich V, Vitkova M, Jardin-Watelet B, Renard E, Strieter R, Tuthill A, Hotamisligil GS, Vidal-Puig A, Zorzano A, Langin D, Fajas L.

Cell Metab. 2009 Apr;9(4):339-49. doi: 10.1016/j.cmet.2009.03.002.

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