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Items: 32

1.

Author Correction: Bioprospecting desert plant Bacillus endophytic strains for their potential to enhance plant stress tolerance.

Bokhari A, Essack M, Lafi FF, Andres-Barrao C, Jalal R, Alamoudi S, Razali R, Alzubaidy H, Shah KH, Siddique S, Bajic VB, Hirt H, Saad MM.

Sci Rep. 2020 Feb 14;10(1):3001. doi: 10.1038/s41598-020-58957-w.

2.

Comparative genomics study reveals Red Sea Bacillus with characteristics associated with potential microbial cell factories (MCFs).

Othoum G, Prigent S, Derouiche A, Shi L, Bokhari A, Alamoudi S, Bougouffa S, Gao X, Hoehndorf R, Arold ST, Gojobori T, Hirt H, Lafi FF, Nielsen J, Bajic VB, Mijakovic I, Essack M.

Sci Rep. 2019 Dec 17;9(1):19254. doi: 10.1038/s41598-019-55726-2.

3.

Bioprospecting desert plant Bacillus endophytic strains for their potential to enhance plant stress tolerance.

Bokhari A, Essack M, Lafi FF, Andres-Barrao C, Jalal R, Alamoudi S, Razali R, Alzubaidy H, Shah KH, Siddique S, Bajic VB, Hirt H, Saad MM.

Sci Rep. 2019 Dec 3;9(1):18154. doi: 10.1038/s41598-019-54685-y. Erratum in: Sci Rep. 2020 Feb 14;10(1):3001.

4.

Mining biosynthetic gene clusters in Virgibacillus genomes.

Othoum G, Bougouffa S, Bokhari A, Lafi FF, Gojobori T, Hirt H, Mijakovic I, Bajic VB, Essack M.

BMC Genomics. 2019 Sep 3;20(1):696. doi: 10.1186/s12864-019-6065-7.

5.

Phylogenetically diverse endophytic bacteria from desert plants induce transcriptional changes of tissue-specific ion transporters and salinity stress in Arabidopsis thaliana.

Eida AA, Alzubaidy HS, de Zélicourt A, Synek L, Alsharif W, Lafi FF, Hirt H, Saad MM.

Plant Sci. 2019 Mar;280:228-240. doi: 10.1016/j.plantsci.2018.12.002. Epub 2018 Dec 7.

PMID:
30824001
6.

Desert plant bacteria reveal host influence and beneficial plant growth properties.

Eida AA, Ziegler M, Lafi FF, Michell CT, Voolstra CR, Hirt H, Saad MM.

PLoS One. 2018 Dec 12;13(12):e0208223. doi: 10.1371/journal.pone.0208223. eCollection 2018.

7.

In silico exploration of Red Sea Bacillus genomes for natural product biosynthetic gene clusters.

Othoum G, Bougouffa S, Razali R, Bokhari A, Alamoudi S, Antunes A, Gao X, Hoehndorf R, Arold ST, Gojobori T, Hirt H, Mijakovic I, Bajic VB, Lafi FF, Essack M.

BMC Genomics. 2018 May 22;19(1):382. doi: 10.1186/s12864-018-4796-5.

8.

Complete Genome Sequence Analysis of Enterobacter sp. SA187, a Plant Multi-Stress Tolerance Promoting Endophytic Bacterium.

Andrés-Barrao C, Lafi FF, Alam I, de Zélicourt A, Eida AA, Bokhari A, Alzubaidy H, Bajic VB, Hirt H, Saad MM.

Front Microbiol. 2017 Oct 20;8:2023. doi: 10.3389/fmicb.2017.02023. eCollection 2017.

9.

Draft Genome Sequence of the Plant Growth-Promoting Rhizobacterium Acinetobacter radioresistens Strain SA188 Isolated from the Desert Plant Indigofera argentea.

Lafi FF, Alam I, Bisseling T, Geurts R, Bajic VB, Hirt H, Saad MM.

Genome Announc. 2017 Mar 2;5(9). pii: e01708-16. doi: 10.1128/genomeA.01708-16.

10.

Draft Genome Sequence of Ochrobactrum intermedium Strain SA148, a Plant Growth-Promoting Desert Rhizobacterium.

Lafi FF, Alam I, Geurts R, Bisseling T, Bajic VB, Hirt H, Saad MM.

Genome Announc. 2017 Mar 2;5(9). pii: e01707-16. doi: 10.1128/genomeA.01707-16.

11.

Draft Genome Sequence of Enterobacter sp. Sa187, an Endophytic Bacterium Isolated from the Desert Plant Indigofera argentea.

Lafi FF, Alam I, Geurts R, Bisseling T, Bajic VB, Hirt H, Saad MM.

Genome Announc. 2017 Feb 16;5(7). pii: e01638-16. doi: 10.1128/genomeA.01638-16.

12.

Draft Genome Sequence of Plant Growth-Promoting Micrococcus luteus Strain K39 Isolated from Cyperus conglomeratus in Saudi Arabia.

Lafi FF, Ramirez-Prado JS, Alam I, Bajic VB, Hirt H, Saad MM.

Genome Announc. 2017 Jan 26;5(4). pii: e01520-16. doi: 10.1128/genomeA.01520-16.

13.

Draft Genome Sequence of the Plant Growth-Promoting Pseudomonas punonensis Strain D1-6 Isolated from the Desert Plant Erodium hirtum in Jordan.

Lafi FF, AlBladi ML, Salem NM, Al-Banna L, Alam I, Bajic VB, Hirt H, Saad MM.

Genome Announc. 2017 Jan 12;5(2). pii: e01437-16. doi: 10.1128/genomeA.01437-16.

14.

Draft Genome Sequence of the Phosphate-Solubilizing Bacterium Pseudomonas argentinensis Strain SA190 Isolated from the Desert Plant Indigofera argentea.

Lafi FF, Alam I, Geurts R, Bisseling T, Bajic VB, Hirt H, Saad MM.

Genome Announc. 2016 Dec 22;4(6). pii: e01431-16. doi: 10.1128/genomeA.01431-16.

15.

Draft Genome Sequence of Halomonas elongata Strain K4, an Endophytic Growth-Promoting Bacterium Enhancing Salinity Tolerance In Planta.

Lafi FF, Ramirez-Prado JS, Alam I, Bajic VB, Hirt H, Saad MM.

Genome Announc. 2016 Nov 3;4(6). pii: e01214-16. doi: 10.1128/genomeA.01214-16.

16.

Metagenomics as a preliminary screen for antimicrobial bioprospecting.

Al-Amoudi S, Razali R, Essack M, Amini MS, Bougouffa S, Archer JA, Lafi FF, Bajic VB.

Gene. 2016 Dec 15;594(2):248-258. doi: 10.1016/j.gene.2016.09.021. Epub 2016 Sep 15.

17.

Bioprospecting Red Sea Coastal Ecosystems for Culturable Microorganisms and Their Antimicrobial Potential.

Al-Amoudi S, Essack M, Simões MF, Bougouffa S, Soloviev I, Archer JA, Lafi FF, Bajic VB.

Mar Drugs. 2016 Sep 10;14(9). pii: E165. doi: 10.3390/md14090165.

18.

Draft Genome Sequence of the Plant Growth-Promoting Cupriavidus gilardii Strain JZ4 Isolated from the Desert Plant Tribulus terrestris.

Lafi FF, Bokhari A, Alam I, Bajic VB, Hirt H, Saad MM.

Genome Announc. 2016 Jul 28;4(4). pii: e00678-16. doi: 10.1128/genomeA.00678-16.

19.

Hologenome analysis of two marine sponges with different microbiomes.

Ryu T, Seridi L, Moitinho-Silva L, Oates M, Liew YJ, Mavromatis C, Wang X, Haywood A, Lafi FF, Kupresanin M, Sougrat R, Alzahrani MA, Giles E, Ghosheh Y, Schunter C, Baumgarten S, Berumen ML, Gao X, Aranda M, Foret S, Gough J, Voolstra CR, Hentschel U, Ravasi T.

BMC Genomics. 2016 Feb 29;17:158. doi: 10.1186/s12864-016-2501-0.

20.

DESM: portal for microbial knowledge exploration systems.

Salhi A, Essack M, Radovanovic A, Marchand B, Bougouffa S, Antunes A, Simoes MF, Lafi FF, Motwalli OA, Bokhari A, Malas T, Amoudi SA, Othum G, Allam I, Mineta K, Gao X, Hoehndorf R, C Archer JA, Gojobori T, Bajic VB.

Nucleic Acids Res. 2016 Jan 4;44(D1):D624-33. doi: 10.1093/nar/gkv1147. Epub 2015 Nov 5.

21.

Rhizosphere microbiome metagenomics of gray mangroves (Avicennia marina) in the Red Sea.

Alzubaidy H, Essack M, Malas TB, Bokhari A, Motwalli O, Kamanu FK, Jamhor SA, Mokhtar NA, Antunes A, Simões MF, Alam I, Bougouffa S, Lafi FF, Bajic VB, Archer JA.

Gene. 2016 Feb 1;576(2 Pt 1):626-36. doi: 10.1016/j.gene.2015.10.032. Epub 2015 Nov 10.

22.

Pyrosequencing revealed shifts of prokaryotic communities between healthy and disease-like tissues of the Red Sea sponge Crella cyathophora.

Gao ZM, Wang Y, Tian RM, Lee OO, Wong YH, Batang ZB, Al-Suwailem A, Lafi FF, Bajic VB, Qian PY.

PeerJ. 2015 Jun 11;3:e890. doi: 10.7717/peerj.890. eCollection 2015.

23.

Aerobic methanotrophic communities at the Red Sea brine-seawater interface.

Abdallah RZ, Adel M, Ouf A, Sayed A, Ghazy MA, Alam I, Essack M, Lafi FF, Bajic VB, El-Dorry H, Siam R.

Front Microbiol. 2014 Sep 23;5:487. doi: 10.3389/fmicb.2014.00487. eCollection 2014.

24.

Pyrosequencing reveals the microbial communities in the Red Sea sponge Carteriospongia foliascens and their impressive shifts in abnormal tissues.

Gao ZM, Wang Y, Lee OO, Tian RM, Wong YH, Bougouffa S, Batang Z, Al-Suwailem A, Lafi FF, Bajic VB, Qian PY.

Microb Ecol. 2014 Oct;68(3):621-32. doi: 10.1007/s00248-014-0419-0. Epub 2014 Apr 24.

PMID:
24760170
25.

In situ environment rather than substrate type dictates microbial community structure of biofilms in a cold seep system.

Lee OO, Wang Y, Tian R, Zhang W, Shek CS, Bougouffa S, Al-Suwailem A, Batang ZB, Xu W, Wang GC, Zhang X, Lafi FF, Bajic VB, Qian PY.

Sci Rep. 2014 Jan 8;4:3587. doi: 10.1038/srep03587.

26.

Deep sequencing of Myxilla (Ectyomyxilla) methanophila, an epibiotic sponge on cold-seep tubeworms, reveals methylotrophic, thiotrophic, and putative hydrocarbon-degrading microbial associations.

Arellano SM, Lee OO, Lafi FF, Yang J, Wang Y, Young CM, Qian PY.

Microb Ecol. 2013 Feb;65(2):450-61. doi: 10.1007/s00248-012-0130-y. Epub 2012 Oct 11.

PMID:
23052927
27.

Pyrosequencing reveals highly diverse and species-specific microbial communities in sponges from the Red Sea.

Lee OO, Wang Y, Yang J, Lafi FF, Al-Suwailem A, Qian PY.

ISME J. 2011 Apr;5(4):650-64. doi: 10.1038/ismej.2010.165. Epub 2010 Nov 18.

28.

Vertical stratification of microbial communities in the Red Sea revealed by 16S rDNA pyrosequencing.

Qian PY, Wang Y, Lee OO, Lau SC, Yang J, Lafi FF, Al-Suwailem A, Wong TY.

ISME J. 2011 Mar;5(3):507-18. doi: 10.1038/ismej.2010.112. Epub 2010 Jul 29. Erratum in: ISME J. 2011 Mar;5(3):568.

29.

Widespread distribution of poribacteria in demospongiae.

Lafi FF, Fuerst JA, Fieseler L, Engels C, Goh WW, Hentschel U.

Appl Environ Microbiol. 2009 Sep;75(17):5695-9. doi: 10.1128/AEM.00035-09. Epub 2009 Jun 26.

31.

Close relationship of RNase P RNA in Gemmata and anammox planctomycete bacteria.

Butler MK, Op den Camp HJ, Harhangi HR, Lafi FF, Strous M, Fuerst JA.

FEMS Microbiol Lett. 2007 Mar;268(2):244-53. Epub 2007 Jan 10.

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