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Best matches for Labonté J[au]:

Minimum Information about an Uncultivated Virus Genome (MIUViG). Roux S et al. Nat Biotechnol. (2019)

The Rosetta All-Atom Energy Function for Macromolecular Modeling and Design. Alford RF et al. J Chem Theory Comput. (2017)

<i>Bembidion ambiguum</i> (Coleoptera: Carabidae) is established in California. Maddison DR et al. Biodivers Data J. (2018)

Search results

Items: 1 to 50 of 72

1.

Novel sampling strategies and a coarse-grained score function for docking homomers, flexible heteromers, and oligosaccharides using Rosetta in CAPRI rounds 37-45.

Roy Burman SS, Nance ML, Jeliazkov JR, Labonte JW, Lubin JH, Biswas N, Gray JJ.

Proteins. 2019 Nov 19. doi: 10.1002/prot.25855. [Epub ahead of print]

PMID:
31742764
2.

Single Cell Genomics-Based Analysis of Gene Content and Expression of Prophages in a Diffuse-Flow Deep-Sea Hydrothermal System.

Labonté JM, Pachiadaki M, Fergusson E, McNichol J, Grosche A, Gulmann LK, Vetriani C, Sievert SM, Stepanauskas R.

Front Microbiol. 2019 Jun 12;10:1262. doi: 10.3389/fmicb.2019.01262. eCollection 2019.

3.

Bembidion ambiguum (Coleoptera: Carabidae) is established in California.

Maddison DR, Will K, Crews S, LaBonte J.

Biodivers Data J. 2018 Dec 4;(6):e30763. doi: 10.3897/BDJ.6.e30763. eCollection 2018.

4.

Minimum Information about an Uncultivated Virus Genome (MIUViG).

Roux S, Adriaenssens EM, Dutilh BE, Koonin EV, Kropinski AM, Krupovic M, Kuhn JH, Lavigne R, Brister JR, Varsani A, Amid C, Aziz RK, Bordenstein SR, Bork P, Breitbart M, Cochrane GR, Daly RA, Desnues C, Duhaime MB, Emerson JB, Enault F, Fuhrman JA, Hingamp P, Hugenholtz P, Hurwitz BL, Ivanova NN, Labonté JM, Lee KB, Malmstrom RR, Martinez-Garcia M, Mizrachi IK, Ogata H, Páez-Espino D, Petit MA, Putonti C, Rattei T, Reyes A, Rodriguez-Valera F, Rosario K, Schriml L, Schulz F, Steward GF, Sullivan MB, Sunagawa S, Suttle CA, Temperton B, Tringe SG, Thurber RV, Webster NS, Whiteson KL, Wilhelm SW, Wommack KE, Woyke T, Wrighton KC, Yilmaz P, Yoshida T, Young MJ, Yutin N, Allen LZ, Kyrpides NC, Eloe-Fadrosh EA.

Nat Biotechnol. 2019 Jan;37(1):29-37. doi: 10.1038/nbt.4306. Epub 2018 Dec 17.

5.

Extracellular polymeric substances (EPS) producing and oil degrading bacteria isolated from the northern Gulf of Mexico.

Bacosa HP, Kamalanathan M, Chiu MH, Tsai SM, Sun L, Labonté JM, Schwehr KA, Hala D, Santschi PH, Chin WC, Quigg A.

PLoS One. 2018 Dec 6;13(12):e0208406. doi: 10.1371/journal.pone.0208406. eCollection 2018.

6.

Author Correction: Improved genome recovery and integrated cell-size analyses of individual uncultured microbial cells and viral particles.

Stepanauskas R, Fergusson EA, Brown J, Poulton NJ, Tupper B, Labonté JM, Becraft ED, Brown JM, Pachiadaki MG, Povilaitis T, Thompson BP, Mascena CJ, Bellows WK, Lubys A.

Nat Commun. 2017 Dec 12;8(1):2134. doi: 10.1038/s41467-017-02128-5.

7.

Prognostic Value of Cardiac Troponin I and L-Lactate in Blood of Dairy Cows Affected by Downer Cow Syndrome.

Labonté J, Dubuc J, Roy JP, Buczinski S.

J Vet Intern Med. 2018 Jan;32(1):484-490. doi: 10.1111/jvim.14874. Epub 2017 Dec 4.

8.

Influence of Igneous Basement on Deep Sediment Microbial Diversity on the Eastern Juan de Fuca Ridge Flank.

Labonté JM, Lever MA, Edwards KJ, Orcutt BN.

Front Microbiol. 2017 Aug 2;8:1434. doi: 10.3389/fmicb.2017.01434. eCollection 2017.

9.

Improved genome recovery and integrated cell-size analyses of individual uncultured microbial cells and viral particles.

Stepanauskas R, Fergusson EA, Brown J, Poulton NJ, Tupper B, Labonté JM, Becraft ED, Brown JM, Pachiadaki MG, Povilaitis T, Thompson BP, Mascena CJ, Bellows WK, Lubys A.

Nat Commun. 2017 Jul 20;8(1):84. doi: 10.1038/s41467-017-00128-z. Erratum in: Nat Commun. 2017 Dec 12;8(1):2134.

10.

The Rosetta All-Atom Energy Function for Macromolecular Modeling and Design.

Alford RF, Leaver-Fay A, Jeliazkov JR, O'Meara MJ, DiMaio FP, Park H, Shapovalov MV, Renfrew PD, Mulligan VK, Kappel K, Labonte JW, Pacella MS, Bonneau R, Bradley P, Dunbrack RL Jr, Das R, Baker D, Kuhlman B, Kortemme T, Gray JJ.

J Chem Theory Comput. 2017 Jun 13;13(6):3031-3048. doi: 10.1021/acs.jctc.7b00125. Epub 2017 May 12.

11.

Glycoengineering of Esterase Activity through Metabolic Flux-Based Modulation of Sialic Acid.

Mathew MP, Tan E, Labonte JW, Shah S, Saeui CT, Liu L, Bhattacharya R, Bovonratwet P, Gray JJ, Yarema KJ.

Chembiochem. 2017 Jul 4;18(13):1204-1215. doi: 10.1002/cbic.201600698. Epub 2017 Apr 20.

12.

Residue-centric modeling and design of saccharide and glycoconjugate structures.

Labonte JW, Adolf-Bryfogle J, Schief WR, Gray JJ.

J Comput Chem. 2017 Feb 15;38(5):276-287. doi: 10.1002/jcc.24679. Epub 2016 Nov 30. Erratum in: J Comput Chem. 2017 May 15;38(13):1015.

13.

Structural Diversity in the Type IV Pili of Multidrug-resistant Acinetobacter.

Piepenbrink KH, Lillehoj E, Harding CM, Labonte JW, Zuo X, Rapp CA, Munson RS Jr, Goldblum SE, Feldman MF, Gray JJ, Sundberg EJ.

J Biol Chem. 2016 Oct 28;291(44):22924-22935. Epub 2016 Sep 15.

14.

A Comprehensive, High-Resolution Map of a Gene's Fitness Landscape.

Firnberg E, Labonte JW, Gray JJ, Ostermeier M.

Mol Biol Evol. 2016 May;33(5):1378. doi: 10.1093/molbev/msw021. Epub 2016 Feb 23. No abstract available.

15.

Molecular Determinants for Protein Stabilization by Insertional Fusion to a Thermophilic Host Protein.

Pierre B, Labonte JW, Xiong T, Aoraha E, Williams A, Shah V, Chau E, Helal KY, Gray JJ, Kim JR.

Chembiochem. 2015 Nov 2;16(16):2392-402. doi: 10.1002/cbic.201500310. Epub 2015 Sep 22.

PMID:
26391210
16.

DNA Extraction Method Affects the Detection of a Fungal Pathogen in Formalin-Fixed Specimens Using qPCR.

Adams AJ, LaBonte JP, Ball ML, Richards-Hrdlicka KL, Toothman MH, Briggs CJ.

PLoS One. 2015 Aug 20;10(8):e0135389. doi: 10.1371/journal.pone.0135389. eCollection 2015.

17.

Measurement of cardiac troponin I in healthy lactating dairy cows using a point of care analyzer (i-STAT-1).

Labonté J, Roy JP, Dubuc J, Buczinski S.

J Vet Cardiol. 2015 Jun;17(2):129-33. doi: 10.1016/j.jvc.2015.02.003. Epub 2015 Jun 1.

PMID:
26044189
18.

Single cell genomics indicates horizontal gene transfer and viral infections in a deep subsurface Firmicutes population.

Labonté JM, Field EK, Lau M, Chivian D, Van Heerden E, Wommack KE, Kieft TL, Onstott TC, Stepanauskas R.

Front Microbiol. 2015 Apr 22;6:349. doi: 10.3389/fmicb.2015.00349. eCollection 2015.

19.

Previously unknown evolutionary groups dominate the ssDNA gokushoviruses in oxic and anoxic waters of a coastal marine environment.

Labonté JM, Hallam SJ, Suttle CA.

Front Microbiol. 2015 Apr 22;6:315. doi: 10.3389/fmicb.2015.00315. eCollection 2015.

20.

Single-cell genomics-based analysis of virus-host interactions in marine surface bacterioplankton.

Labonté JM, Swan BK, Poulos B, Luo H, Koren S, Hallam SJ, Sullivan MB, Woyke T, Wommack KE, Stepanauskas R.

ISME J. 2015 Nov;9(11):2386-99. doi: 10.1038/ismej.2015.48. Epub 2015 Apr 7.

21.

Corrigendum: Metagenomic and whole-genome analysis reveals new lineages of gokushoviruses and biogeographic separation in the sea.

Labonté JM, Suttle CA.

Front Microbiol. 2015 Feb 11;6:114. doi: 10.3389/fmicb.2015.00114. eCollection 2015.

22.

Chymase inhibitor-sensitive synthesis of endothelin-1 (1-31) by recombinant mouse mast cell protease 4 and human chymase.

Semaan W, Desbiens L, Houde M, Labonté J, Gagnon H, Yamamoto D, Takai S, Laidlaw T, Bkaily G, Schwertani A, Pejler G, Levesque C, Desjardins R, Day R, D'Orléans-Juste P.

Biochem Pharmacol. 2015 Mar 15;94(2):91-100. doi: 10.1016/j.bcp.2015.02.001. Epub 2015 Feb 7.

PMID:
25667044
23.

Ground beetles (Coleoptera, Carabidae) of the Hanford Nuclear Site in south-central Washington State.

Looney C, Zack RS, Labonte JR.

Zookeys. 2014 Apr 2;(396):13-42. doi: 10.3897/zookeys.396.6936. eCollection 2014.

24.

A comprehensive, high-resolution map of a gene's fitness landscape.

Firnberg E, Labonte JW, Gray JJ, Ostermeier M.

Mol Biol Evol. 2014 Jun;31(6):1581-92. doi: 10.1093/molbev/msu081. Epub 2014 Feb 23. Erratum in: Mol Biol Evol. 2016 May;33(5):1378.

25.

Metagenomic and whole-genome analysis reveals new lineages of gokushoviruses and biogeographic separation in the sea.

Labonté JM, Suttle CA.

Front Microbiol. 2013 Dec 24;4:404. doi: 10.3389/fmicb.2013.00404. eCollection 2013. Erratum in: Front Microbiol. 2015;6:114.

26.

Extending RosettaDock with water, sugar, and pH for prediction of complex structures and affinities for CAPRI rounds 20-27.

Kilambi KP, Pacella MS, Xu J, Labonte JW, Porter JR, Muthu P, Drew K, Kuroda D, Schueler-Furman O, Bonneau R, Gray JJ.

Proteins. 2013 Dec;81(12):2201-9. doi: 10.1002/prot.24425. Epub 2013 Oct 17.

27.

NMR detection and study of hydrolysis of HNO-derived sulfinamides.

Keceli G, Moore CD, Labonte JW, Toscano JP.

Biochemistry. 2013 Oct 22;52(42):7387-96. doi: 10.1021/bi401110f. Epub 2013 Oct 7.

PMID:
24073927
28.

Adding diverse noncanonical backbones to rosetta: enabling peptidomimetic design.

Drew K, Renfrew PD, Craven TW, Butterfoss GL, Chou FC, Lyskov S, Bullock BN, Watkins A, Labonte JW, Pacella M, Kilambi KP, Leaver-Fay A, Kuhlman B, Gray JJ, Bradley P, Kirshenbaum K, Arora PS, Das R, Bonneau R.

PLoS One. 2013 Jul 15;8(7):e67051. doi: 10.1371/journal.pone.0067051. Print 2013.

29.

Previously unknown and highly divergent ssDNA viruses populate the oceans.

Labonté JM, Suttle CA.

ISME J. 2013 Nov;7(11):2169-77. doi: 10.1038/ismej.2013.110. Epub 2013 Jul 11.

30.

Pivotal role of mouse mast cell protease 4 in the conversion and pressor properties of Big-endothelin-1.

Houde M, Jamain MD, Labonté J, Desbiens L, Pejler G, Gurish M, Takai S, D'Orléans-Juste P.

J Pharmacol Exp Ther. 2013 Jul;346(1):31-7. doi: 10.1124/jpet.112.202275. Epub 2013 Apr 17.

31.

Further pharmacological evaluation of a novel synthetic peptide bradykinin B2 receptor agonist.

Savard M, Labonté J, Dubuc C, Neugebauer W, D'Orléans-Juste P, Gobeil F Jr.

Biol Chem. 2013 Mar;394(3):353-60. doi: 10.1515/hsz-2012-0295.

PMID:
23362191
33.

Characterization of a fungal thioesterase having Claisen cyclase and deacetylase activities in melanin biosynthesis.

Vagstad AL, Hill EA, Labonte JW, Townsend CA.

Chem Biol. 2012 Dec 21;19(12):1525-34. doi: 10.1016/j.chembiol.2012.10.002.

34.

Active site comparisons and catalytic mechanisms of the hot dog superfamily.

Labonte JW, Townsend CA.

Chem Rev. 2013 Mar 13;113(3):2182-204. doi: 10.1021/cr300169a. Epub 2012 Dec 3. Review. No abstract available.

35.

Autoproteolytic activation of ThnT results in structural reorganization necessary for substrate binding and catalysis.

Buller AR, Labonte JW, Freeman MF, Wright NT, Schildbach JF, Townsend CA.

J Mol Biol. 2012 Sep 28;422(4):508-18. doi: 10.1016/j.jmb.2012.06.012. Epub 2012 Jun 15.

36.

Nebria brevicollis (Fabricius, 1792) in North America, benign or malign? (Coleoptera, Carabidae, Nebriini).

Labonte JR.

Zookeys. 2011;(147):497-543. doi: 10.3897/zookeys.147.2119. Epub 2011 Nov 16.

37.

Engineering the synthetic potential of β-lactam synthetase and the importance of catalytic loop dynamics.

Labonte JW, Kudo F, Freeman MF, Raber ML, Townsend CA.

Medchemcomm. 2012 Jan 1;3:960-966.

38.

Peptide and non-peptide antagonists targeting endothelin receptors in physiology and pathology.

Houde M, Labonté J, D'Orléans-Juste P.

Curr Pharm Des. 2011;17(25):2613-25. Review.

PMID:
21728984
39.

Structure and function of an iterative polyketide synthase thioesterase domain catalyzing Claisen cyclization in aflatoxin biosynthesis.

Korman TP, Crawford JM, Labonte JW, Newman AG, Wong J, Townsend CA, Tsai SC.

Proc Natl Acad Sci U S A. 2010 Apr 6;107(14):6246-51. doi: 10.1073/pnas.0913531107. Epub 2010 Mar 23.

40.

Two patients with EP300 mutations and facial dysmorphism different from the classic Rubinstein-Taybi syndrome.

Bartsch O, Labonté J, Albrecht B, Wieczorek D, Lechno S, Zechner U, Haaf T.

Am J Med Genet A. 2010 Jan;152A(1):181-4. doi: 10.1002/ajmg.a.33153.

PMID:
20014264
41.

Structural basis for biosynthetic programming of fungal aromatic polyketide cyclization.

Crawford JM, Korman TP, Labonte JW, Vagstad AL, Hill EA, Kamari-Bidkorpeh O, Tsai SC, Townsend CA.

Nature. 2009 Oct 22;461(7267):1139-43. doi: 10.1038/nature08475.

42.

Phylogenetic analysis indicates evolutionary diversity and environmental segregation of marine podovirus DNA polymerase gene sequences.

Labonté JM, Reid KE, Suttle CA.

Appl Environ Microbiol. 2009 Jun;75(11):3634-40. doi: 10.1128/AEM.02317-08. Epub 2009 Apr 10.

43.

Distinct modulation of the endothelin-1 pathway in iNOS-/- and eNOS-/- mice.

Labonté J, Brochu I, Simard E, D'Orléans-Juste P.

Can J Physiol Pharmacol. 2008 Aug;86(8):516-25. doi: 10.1139/Y08-042.

44.

Phage response to CRISPR-encoded resistance in Streptococcus thermophilus.

Deveau H, Barrangou R, Garneau JE, Labonté J, Fremaux C, Boyaval P, Romero DA, Horvath P, Moineau S.

J Bacteriol. 2008 Feb;190(4):1390-400. Epub 2007 Dec 7.

45.

Adaptation of the human immunodeficiency virus type 1 envelope glycoproteins to new world monkey receptors.

Pacheco B, Basmaciogullari S, Labonte JA, Xiang SH, Sodroski J.

J Virol. 2008 Jan;82(1):346-57. Epub 2007 Oct 24.

46.

The unconventional Xer recombination machinery of Streptococci/Lactococci.

Le Bourgeois P, Bugarel M, Campo N, Daveran-Mingot ML, Labonté J, Lanfranchi D, Lautier T, Pagès C, Ritzenthaler P.

PLoS Genet. 2007 Jul;3(7):e117.

47.

Effects of tillage on the activity density and biological diversity of carabid beetles in spring and winter crops.

Hatten TD, Bosque-Pérez NA, Labonte JR, Guy SO, Eigenbrode SD.

Environ Entomol. 2007 Apr;36(2):356-68.

PMID:
17445370
48.

Genomic organization and molecular analysis of virulent bacteriophage 2972 infecting an exopolysaccharide-producing Streptococcus thermophilus strain.

Lévesque C, Duplessis M, Labonté J, Labrie S, Fremaux C, Tremblay D, Moineau S.

Appl Environ Microbiol. 2005 Jul;71(7):4057-68.

49.

Endothelin-1 (1-31) is an intermediate in the production of endothelin-1 after big endothelin-1 administration in vivo.

Fecteau MH, Honoré JC, Plante M, Labonté J, Rae GA, D'Orléans-Juste P.

Hypertension. 2005 Jul;46(1):87-92. Epub 2005 Jun 13.

PMID:
15956117
50.

Concomitant antagonism of endothelial and vascular smooth muscle cell ETB receptors for endothelin induces hypertension in the hamster.

Honoré JC, Fecteau MH, Brochu I, Labonté J, Bkaily G, D'Orleans-Juste P.

Am J Physiol Heart Circ Physiol. 2005 Sep;289(3):H1258-64. Epub 2005 May 6.

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