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Items: 23

1.

DNA methylation signature of human hippocampus in Alzheimer's disease is linked to neurogenesis.

Altuna M, Urdánoz-Casado A, Sánchez-Ruiz de Gordoa J, Zelaya MV, Labarga A, Lepesant JMJ, Roldán M, Blanco-Luquin I, Perdones Á, Larumbe R, Jericó I, Echavarri C, Méndez-López I, Di Stefano L, Mendioroz M.

Clin Epigenetics. 2019 Jun 19;11(1):91. doi: 10.1186/s13148-019-0672-7.

2.

Mass Spectrometry-Based Proteomic Profiling of Thrombotic Material Obtained by Endovascular Thrombectomy in Patients with Ischemic Stroke.

Muñoz R, Santamaría E, Rubio I, Ausín K, Ostolaza A, Labarga A, Roldán M, Zandio B, Mayor S, Bermejo R, Mendigaña M, Herrera M, Aymerich N, Olier J, Gállego J, Mendioroz M, Fernández-Irigoyen J.

Int J Mol Sci. 2018 Feb 7;19(2). pii: E498. doi: 10.3390/ijms19020498.

3.

Information Management.

Labarga A, Beloqui I, Martin AG.

Methods Mol Biol. 2017;1590:29-39. doi: 10.1007/978-1-4939-6921-0_4. Review.

PMID:
28353261
4.

Toward defining the anatomo-proteomic puzzle of the human brain: An integrative analysis.

Fernandez-Irigoyen J, Labarga A, Zabaleta A, de Morentin XM, Perez-Valderrama E, Zelaya MV, Santamaria E.

Proteomics Clin Appl. 2015 Oct;9(9-10):796-807. doi: 10.1002/prca.201400127. Epub 2015 Feb 24. Review.

PMID:
25418211
5.

The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies.

Katayama T, Wilkinson MD, Micklem G, Kawashima S, Yamaguchi A, Nakao M, Yamamoto Y, Okamoto S, Oouchida K, Chun HW, Aerts J, Afzal H, Antezana E, Arakawa K, Aranda B, Belleau F, Bolleman J, Bonnal RJ, Chapman B, Cock PJ, Eriksson T, Gordon PM, Goto N, Hayashi K, Horn H, Ishiwata R, Kaminuma E, Kasprzyk A, Kawaji H, Kido N, Kim YJ, Kinjo AR, Konishi F, Kwon KH, Labarga A, Lamprecht AL, Lin Y, Lindenbaum P, McCarthy L, Morita H, Murakami K, Nagao K, Nishida K, Nishimura K, Nishizawa T, Ogishima S, Ono K, Oshita K, Park KJ, Prins P, Saito TL, Samwald M, Satagopam VP, Shigemoto Y, Smith R, Splendiani A, Sugawara H, Taylor J, Vos RA, Withers D, Yamasaki C, Zmasek CM, Kawamoto S, Okubo K, Asai K, Takagi T.

J Biomed Semantics. 2013 Feb 11;4(1):6. doi: 10.1186/2041-1480-4-6.

6.

The differentiation stage of p53-Rb-deficient bone marrow mesenchymal stem cells imposes the phenotype of in vivo sarcoma development.

Rubio R, Gutierrez-Aranda I, Sáez-Castillo AI, Labarga A, Rosu-Myles M, Gonzalez-Garcia S, Toribio ML, Menendez P, Rodriguez R.

Oncogene. 2013 Oct 10;32(41):4970-80. doi: 10.1038/onc.2012.507. Epub 2012 Dec 10.

PMID:
23222711
7.

A public resource facilitating clinical use of genomes.

Ball MP, Thakuria JV, Zaranek AW, Clegg T, Rosenbaum AM, Wu X, Angrist M, Bhak J, Bobe J, Callow MJ, Cano C, Chou MF, Chung WK, Douglas SM, Estep PW, Gore A, Hulick P, Labarga A, Lee JH, Lunshof JE, Kim BC, Kim JI, Li Z, Murray MF, Nilsen GB, Peters BA, Raman AM, Rienhoff HY, Robasky K, Wheeler MT, Vandewege W, Vorhaus DB, Yang JL, Yang L, Aach J, Ashley EA, Drmanac R, Kim SJ, Li JB, Peshkin L, Seidman CE, Seo JS, Zhang K, Rehm HL, Church GM.

Proc Natl Acad Sci U S A. 2012 Jul 24;109(30):11920-7. doi: 10.1073/pnas.1201904109. Epub 2012 Jul 13.

8.

The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications.

Katayama T, Wilkinson MD, Vos R, Kawashima T, Kawashima S, Nakao M, Yamamoto Y, Chun HW, Yamaguchi A, Kawano S, Aerts J, Aoki-Kinoshita KF, Arakawa K, Aranda B, Bonnal RJ, Fernández JM, Fujisawa T, Gordon PM, Goto N, Haider S, Harris T, Hatakeyama T, Ho I, Itoh M, Kasprzyk A, Kido N, Kim YJ, Kinjo AR, Konishi F, Kovarskaya Y, von Kuster G, Labarga A, Limviphuvadh V, McCarthy L, Nakamura Y, Nam Y, Nishida K, Nishimura K, Nishizawa T, Ogishima S, Oinn T, Okamoto S, Okuda S, Ono K, Oshita K, Park KJ, Putnam N, Senger M, Severin J, Shigemoto Y, Sugawara H, Taylor J, Trelles O, Yamasaki C, Yamashita R, Satoh N, Takagi T.

J Biomed Semantics. 2011 Aug 2;2:4. doi: 10.1186/2041-1480-2-4.

9.

Dasty2, an Ajax protein DAS client.

Jimenez RC, Quinn AF, Garcia A, Labarga A, O'Neill K, Martinez F, Salazar GA, Hermjakob H.

Bioinformatics. 2008 Sep 15;24(18):2119-21. doi: 10.1093/bioinformatics/btn387. Epub 2008 Aug 11.

PMID:
18694895
10.

Experience using web services for biological sequence analysis.

Stockinger H, Attwood T, Chohan SN, Côté R, Cudré-Mauroux P, Falquet L, Fernandes P, Finn RD, Hupponen T, Korpelainen E, Labarga A, Laugraud A, Lima T, Pafilis E, Pagni M, Pettifer S, Phan I, Rahman N.

Brief Bioinform. 2008 Nov;9(6):493-505. doi: 10.1093/bib/bbn029. Epub 2008 Jul 11.

11.

A tree-based conservation scoring method for short linear motifs in multiple alignments of protein sequences.

Chica C, Labarga A, Gould CM, López R, Gibson TJ.

BMC Bioinformatics. 2008 May 6;9:229. doi: 10.1186/1471-2105-9-229.

12.

Priorities for nucleotide trace, sequence and annotation data capture at the Ensembl Trace Archive and the EMBL Nucleotide Sequence Database.

Cochrane G, Akhtar R, Aldebert P, Althorpe N, Baldwin A, Bates K, Bhattacharyya S, Bonfield J, Bower L, Browne P, Castro M, Cox T, Demiralp F, Eberhardt R, Faruque N, Hoad G, Jang M, Kulikova T, Labarga A, Leinonen R, Leonard S, Lin Q, Lopez R, Lorenc D, McWilliam H, Mukherjee G, Nardone F, Plaister S, Robinson S, Sobhany S, Vaughan R, Wu D, Zhu W, Apweiler R, Hubbard T, Birney E.

Nucleic Acids Res. 2008 Jan;36(Database issue):D5-12. Epub 2007 Nov 26.

13.

Web services at the European bioinformatics institute.

Labarga A, Valentin F, Anderson M, Lopez R.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W6-11. Epub 2007 Jun 18.

14.

A gene signature of 8 genes could identify the risk of recurrence and progression in Dukes' B colon cancer patients.

Bandrés E, Malumbres R, Cubedo E, Honorato B, Zarate R, Labarga A, Gabisu U, Sola JJ, García-Foncillas J.

Oncol Rep. 2007 May;17(5):1089-94.

15.

New developments in the InterPro database.

Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bork P, Buillard V, Cerutti L, Copley R, Courcelle E, Das U, Daugherty L, Dibley M, Finn R, Fleischmann W, Gough J, Haft D, Hulo N, Hunter S, Kahn D, Kanapin A, Kejariwal A, Labarga A, Langendijk-Genevaux PS, Lonsdale D, Lopez R, Letunic I, Madera M, Maslen J, McAnulla C, McDowall J, Mistry J, Mitchell A, Nikolskaya AN, Orchard S, Orengo C, Petryszak R, Selengut JD, Sigrist CJ, Thomas PD, Valentin F, Wilson D, Wu CH, Yeats C.

Nucleic Acids Res. 2007 Jan;35(Database issue):D224-8.

16.

Frontal and central oscillatory changes related to different aspects of the motor process: a study in go/no-go paradigms.

Alegre M, Gurtubay IG, Labarga A, Iriarte J, Valencia M, Artieda J.

Exp Brain Res. 2004 Nov;159(1):14-22. Epub 2004 Jul 29.

PMID:
15480586
17.

Gamma band responses to target and non-target auditory stimuli in humans.

Gurtubay IG, Alegre M, Labarga A, Malanda A, Artieda J.

Neurosci Lett. 2004 Aug 26;367(1):6-9.

PMID:
15308286
18.

Alpha and beta oscillatory activity during a sequence of two movements.

Alegre M, de Gurtubay IG, Labarga A, Iriarte J, Malanda A, Artieda J.

Clin Neurophysiol. 2004 Jan;115(1):124-30.

PMID:
14706479
19.

GARBAN: genomic analysis and rapid biological annotation of cDNA microarray and proteomic data.

Martínez-Cruz LA, Rubio A, Martínez-Chantar ML, Labarga A, Barrio I, Podhorski A, Segura V, Sevilla Campo JL, Avila MA, Mato JM.

Bioinformatics. 2003 Nov 1;19(16):2158-60.

20.

Alpha and beta oscillatory changes during stimulus-induced movement paradigms: effect of stimulus predictability.

Alegre M, Gurtubay IG, Labarga A, Iriarte J, Malanda A, Artieda J.

Neuroreport. 2003 Mar 3;14(3):381-5.

PMID:
12634488
21.

Movement-related changes in cortical oscillatory activity in ballistic, sustained and negative movements.

Alegre M, Labarga A, Gurtubay IG, Iriarte J, Malanda A, Artieda J.

Exp Brain Res. 2003 Jan;148(1):17-25. Epub 2002 Nov 9.

PMID:
12478393
22.

Beta electroencephalograph changes during passive movements: sensory afferences contribute to beta event-related desynchronization in humans.

Alegre M, Labarga A, Gurtubay IG, Iriarte J, Malanda A, Artieda J.

Neurosci Lett. 2002 Oct 4;331(1):29-32.

PMID:
12359316
23.

Gamma band activity in an auditory oddball paradigm studied with the wavelet transform.

Gurtubay IG, Alegre M, Labarga A, Malanda A, Iriarte J, Artieda J.

Clin Neurophysiol. 2001 Jul;112(7):1219-28.

PMID:
11516733

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