Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 158

1.

Launching the C-HPP pilot project for functional characterization of identified proteins with no known function.

Paik YK, Lane L, Kawamura T, Chen YJ, Cho JY, LaBaer J, Yoo JS, Domont GB, Corrales F, Omenn GS, Archakov A, Encarnación-Guevara S, Liu S, Salekdeh GH, Cho JY, Kim CY, Overall CM.

J Proteome Res. 2018 Oct 1. doi: 10.1021/acs.jproteome.8b00383. [Epub ahead of print]

PMID:
30269496
2.

A Non-Invasive Blood-Based Combinatorial Proteomic Biomarker Assay to Detect Breast Cancer in Women over age 50 with BI-RADS 3, 4, or 5 Assessment.

Henderson MC, Silver M, Tran Q, Letsios EE, Mulpuri R, Reese DE, Lourenco AP, LaBaer J, Anderson KS, Alpers J, Costantini C, Rohatgi N, Ali H, Baker K, Northfelt DW, Ghosh K, Grobmyer SR, Polen W, Wolf JK.

Clin Cancer Res. 2018 Sep 5. pii: clincanres.0843.2018. doi: 10.1158/1078-0432.CCR-18-0843. [Epub ahead of print]

PMID:
30185421
3.

Self-assembling functional programmable protein array for studying protein-protein interactions in malaria parasites.

Arévalo-Pinzón G, González-González M, Suárez CF, Curtidor H, Carabias-Sánchez J, Muro A, LaBaer J, Patarroyo MA, Fuentes M.

Malar J. 2018 Jul 17;17(1):270. doi: 10.1186/s12936-018-2414-2.

4.

What's in a sample? Increasing transparency in biospecimen procurement methods.

LaBaer J, Miceli JF 3rd, Freedman LP.

Nat Methods. 2018 Apr 27;15(5):303-304. doi: 10.1038/nmeth.4684. No abstract available.

PMID:
29702632
5.

Legionella effector AnkX interacts with host nuclear protein PLEKHN1.

Yu X, Noll RR, Romero Dueñas BP, Allgood SC, Barker K, Caplan JL, Machner MP, LaBaer J, Qiu J, Neunuebel MR.

BMC Microbiol. 2018 Jan 5;18(1):5. doi: 10.1186/s12866-017-1147-7.

6.

Tandem Histone-Binding Domains Enhance the Activity of a Synthetic Chromatin Effector.

Tekel SJ, Vargas DA, Song L, LaBaer J, Caplan MR, Haynes KA.

ACS Synth Biol. 2018 Mar 16;7(3):842-852. doi: 10.1021/acssynbio.7b00281. Epub 2018 Feb 23.

PMID:
29429329
7.

Ibrutinib inhibition of ERBB4 reduces cell growth in a WNT5A-dependent manner.

Rauf F, Festa F, Park JG, Magee M, Eaton S, Rinaldi C, Betanzos CM, Gonzalez-Malerva L, LaBaer J.

Oncogene. 2018 Apr;37(17):2237-2250. doi: 10.1038/s41388-017-0079-x. Epub 2018 Feb 5.

8.

A Perspective on Proteomics of Infectious Diseases.

Venkatesh A, Gil C, Fuentes M, LaBaer J, Srivastava S.

Proteomics Clin Appl. 2018 Jul;12(4):e1700139. doi: 10.1002/prca.201700139. Epub 2018 Jan 19.

PMID:
29282898
9.

Expression system for structural and functional studies of human glycosylation enzymes.

Moremen KW, Ramiah A, Stuart M, Steel J, Meng L, Forouhar F, Moniz HA, Gahlay G, Gao Z, Chapla D, Wang S, Yang JY, Prabhakar PK, Johnson R, Rosa MD, Geisler C, Nairn AV, Seetharaman J, Wu SC, Tong L, Gilbert HJ, LaBaer J, Jarvis DL.

Nat Chem Biol. 2018 Feb;14(2):156-162. doi: 10.1038/nchembio.2539. Epub 2017 Dec 18.

10.

Advances in cell-free protein array methods.

Yu X, Petritis B, Duan H, Xu D, LaBaer J.

Expert Rev Proteomics. 2018 Jan;15(1):1-11. doi: 10.1080/14789450.2018.1415146. Epub 2017 Dec 13.

PMID:
29214870
11.

Multiplexed Nucleic Acid Programmable Protein Arrays.

Yu X, Song L, Petritis B, Bian X, Wang H, Viloria J, Park J, Bui H, Li H, Wang J, Liu L, Yang L, Duan H, McMurray DN, Achkar JM, Magee M, Qiu J, LaBaer J.

Theranostics. 2017 Sep 20;7(16):4057-4070. doi: 10.7150/thno.20151. eCollection 2017.

12.

Automatic Identification and Quantification of Extra-Well Fluorescence in Microarray Images.

Rivera R, Wang J, Yu X, Demirkan G, Hopper M, Bian X, Tahsin T, Magee DM, Qiu J, LaBaer J, Wallstrom G.

J Proteome Res. 2017 Nov 3;16(11):3969-3977. doi: 10.1021/acs.jproteome.7b00267. Epub 2017 Oct 10.

PMID:
28938071
13.

Autoantibody biomarkers for the detection of serous ovarian cancer.

Katchman BA, Chowell D, Wallstrom G, Vitonis AF, LaBaer J, Cramer DW, Anderson KS.

Gynecol Oncol. 2017 Jul;146(1):129-136. doi: 10.1016/j.ygyno.2017.04.005. Epub 2017 Apr 18.

14.

Developing Human Radiation Biodosimetry Models: Testing Cross-Species Conversion Approaches Using an Ex Vivo Model System.

Park JG, Paul S, Briones N, Zeng J, Gillis K, Wallstrom G, LaBaer J, Amundson SA.

Radiat Res. 2017 Jun;187(6):708-721. doi: 10.1667/RR14655.1. Epub 2017 Mar 22.

15.

Discovering Protein-Protein Interactions Using Nucleic Acid Programmable Protein Arrays.

Tang Y, Qiu J, Machner M, LaBaer J.

Curr Protoc Cell Biol. 2017 Mar 3;74:15.21.1-15.21.14. doi: 10.1002/cpcb.14.

PMID:
28256722
16.

Identification of Antibody Targets for Tuberculosis Serology using High-Density Nucleic Acid Programmable Protein Arrays.

Song L, Wallstrom G, Yu X, Hopper M, Van Duine J, Steel J, Park J, Wiktor P, Kahn P, Brunner A, Wilson D, Jenny-Avital ER, Qiu J, Labaer J, Magee DM, Achkar JM.

Mol Cell Proteomics. 2017 Apr;16(4 suppl 1):S277-S289. doi: 10.1074/mcp.M116.065953. Epub 2017 Feb 21.

17.

Identification of Antibody Against SNRPB, Small Nuclear Ribonucleoprotein-Associated Proteins B and B', as an Autoantibody Marker in Crohn's Disease using an Immunoproteomics Approach.

Wang H, Demirkan G, Bian X, Wallstrom G, Barker K, Karthikeyan K, Tang Y, Pasha SF, Leighton JA, Qiu J, LaBaer J.

J Crohns Colitis. 2017 Jul 1;11(7):848-856. doi: 10.1093/ecco-jcc/jjx019.

PMID:
28204086
18.

The Immune System and the Proteome.

Marko-Varga G, LaBaer J.

J Proteome Res. 2017 Jan 6;16(1):1. doi: 10.1021/acs.jproteome.6b00607. No abstract available.

PMID:
28056507
19.

AAgAtlas 1.0: a human autoantigen database.

Wang D, Yang L, Zhang P, LaBaer J, Hermjakob H, Li D, Yu X.

Nucleic Acids Res. 2017 Jan 4;45(D1):D769-D776. doi: 10.1093/nar/gkw946. Epub 2016 Oct 19.

20.

Tracking the Antibody Immunome in Type 1 Diabetes Using Protein Arrays.

Bian X, Wasserfall C, Wallstrom G, Wang J, Wang H, Barker K, Schatz D, Atkinson M, Qiu J, LaBaer J.

J Proteome Res. 2017 Jan 6;16(1):195-203. doi: 10.1021/acs.jproteome.6b00354. Epub 2016 Oct 17.

PMID:
27690455
21.

Mapping transcription factor interactome networks using HaloTag protein arrays.

Yazaki J, Galli M, Kim AY, Nito K, Aleman F, Chang KN, Carvunis AR, Quan R, Nguyen H, Song L, Alvarez JM, Huang SS, Chen H, Ramachandran N, Altmann S, Gutiérrez RA, Hill DE, Schroeder JI, Chory J, LaBaer J, Vidal M, Braun P, Ecker JR.

Proc Natl Acad Sci U S A. 2016 Jul 19;113(29):E4238-47. doi: 10.1073/pnas.1603229113. Epub 2016 Jun 29.

22.

A Contra Capture Protein Array Platform for Studying Post-translationally Modified (PTM) Auto-antigenomes.

Karthikeyan K, Barker K, Tang Y, Kahn P, Wiktor P, Brunner A, Knabben V, Takulapalli B, Buckner J, Nepom G, LaBaer J, Qiu J.

Mol Cell Proteomics. 2016 Jul;15(7):2324-37. doi: 10.1074/mcp.M115.057661. Epub 2016 May 2.

23.

Proteomic mapping of p53 immunogenicity in pancreatic, ovarian, and breast cancers.

Katchman BA, Barderas R, Alam R, Chowell D, Field MS, Esserman LJ, Wallstrom G, LaBaer J, Cramer DW, Hollingsworth MA, Anderson KS.

Proteomics Clin Appl. 2016 Jul;10(7):720-31. doi: 10.1002/prca.201500096. Epub 2016 May 17.

24.

Comparative Study of Autoantibody Responses between Lung Adenocarcinoma and Benign Pulmonary Nodules.

Wang J, Shivakumar S, Barker K, Tang Y, Wallstrom G, Park JG, Tsay JC, Pass HI, Rom WN, LaBaer J, Qiu J.

J Thorac Oncol. 2016 Mar;11(3):334-45. doi: 10.1016/j.jtho.2015.11.011. Epub 2016 Feb 16.

25.

Advancing translational research with next-generation protein microarrays.

Yu X, Petritis B, LaBaer J.

Proteomics. 2016 Apr;16(8):1238-50. doi: 10.1002/pmic.201500374. Epub 2016 Mar 31. Review.

PMID:
26749402
26.

Sustainability in a Hospital-Based Biobank and University-Based DNA Biorepository: Strategic Roadmaps.

Seiler CY, Eschbacher J, Bowser R, LaBaer J.

Biopreserv Biobank. 2015 Dec;13(6):401-9. doi: 10.1089/bio.2015.0076.

27.

Immunoproteomic Profiling of Antiviral Antibodies in New-Onset Type 1 Diabetes Using Protein Arrays.

Bian X, Wallstrom G, Davis A, Wang J, Park J, Throop A, Steel J, Yu X, Wasserfall C, Schatz D, Atkinson M, Qiu J, LaBaer J.

Diabetes. 2016 Jan;65(1):285-96. doi: 10.2337/db15-0179. Epub 2015 Oct 8.

28.

Biophysical Characterization of a Vaccine Candidate against HIV-1: The Transmembrane and Membrane Proximal Domains of HIV-1 gp41 as a Maltose Binding Protein Fusion.

Gong Z, Martin-Garcia JM, Daskalova SM, Craciunescu FM, Song L, Dörner K, Hansen DT, Yang JH, LaBaer J, Hogue BG, Mor TS, Fromme P.

PLoS One. 2015 Aug 21;10(8):e0136507. doi: 10.1371/journal.pone.0136507. eCollection 2015.

29.

Integration of Proteomics and Transcriptomics Data Sets for the Analysis of a Lymphoma B-Cell Line in the Context of the Chromosome-Centric Human Proteome Project.

Díez P, Droste C, Dégano RM, González-Muñoz M, Ibarrola N, Pérez-Andrés M, Garin-Muga A, Segura V, Marko-Varga G, LaBaer J, Orfao A, Corrales FJ, De Las Rivas J, Fuentes M.

J Proteome Res. 2015 Sep 4;14(9):3530-40. doi: 10.1021/acs.jproteome.5b00474. Epub 2015 Aug 5.

PMID:
26216070
30.

In Vitro Transcription/Translation System: A Versatile Tool in the Search for Missing Proteins.

Horvatovich P, Végvári Á, Saul J, Park JG, Qiu J, Syring M, Pirrotte P, Petritis K, Tegeler TJ, Aziz M, Fuentes M, Diez P, Gonzalez-Gonzalez M, Ibarrola N, Droste C, De Las Rivas J, Gil C, Clemente F, Hernaez ML, Corrales FJ, Nilsson CL, Berven FS, Bischoff R, Fehniger TE, LaBaer J, Marko-Varga G.

J Proteome Res. 2015 Sep 4;14(9):3441-51. doi: 10.1021/acs.jproteome.5b00486. Epub 2015 Jul 28.

PMID:
26155874
31.

Nonenzymatic Protein Acetylation Detected by NAPPA Protein Arrays.

Olia AS, Barker K, McCullough CE, Tang HY, Speicher DW, Qiu J, LaBaer J, Marmorstein R.

ACS Chem Biol. 2015 Sep 18;10(9):2034-47. doi: 10.1021/acschembio.5b00342. Epub 2015 Jun 23.

32.

Plasma Autoantibodies Associated with Basal-like Breast Cancers.

Wang J, Figueroa JD, Wallstrom G, Barker K, Park JG, Demirkan G, Lissowska J, Anderson KS, Qiu J, LaBaer J.

Cancer Epidemiol Biomarkers Prev. 2015 Sep;24(9):1332-40. doi: 10.1158/1055-9965.EPI-15-0047. Epub 2015 Jun 12.

33.

High-throughput identification of proteins with AMPylation using self-assembled human protein (NAPPA) microarrays.

Yu X, LaBaer J.

Nat Protoc. 2015 May;10(5):756-67. doi: 10.1038/nprot.2015.044. Epub 2015 Apr 16.

34.

Site-specific recombinational cloning using gateway and in-fusion cloning schemes.

Park J, Throop AL, LaBaer J.

Curr Protoc Mol Biol. 2015 Apr 1;110:3.20.1-23. doi: 10.1002/0471142727.mb0320s110.

35.

Antiviral antibody profiling by high-density protein arrays.

Bian X, Wiktor P, Kahn P, Brunner A, Khela A, Karthikeyan K, Barker K, Yu X, Magee M, Wasserfall CH, Gibson D, Rooney ME, Qiu J, LaBaer J.

Proteomics. 2015 Jun;15(12):2136-45. doi: 10.1002/pmic.201400612. Epub 2015 May 15.

36.

Recent advances in proteomics applied to elucidate the role of environmental impacts on human health and organismal function.

Halden RU, Hartmann EM, Denslow ND, Haynes PA, LaBaer J.

J Proteome Res. 2015 Jan 2;14(1):1-4. doi: 10.1021/pr501224f. No abstract available.

PMID:
25751307
37.

Host-pathogen interaction profiling using self-assembling human protein arrays.

Yu X, Decker KB, Barker K, Neunuebel MR, Saul J, Graves M, Westcott N, Hang H, LaBaer J, Qiu J, Machner MP.

J Proteome Res. 2015 Apr 3;14(4):1920-36. doi: 10.1021/pr5013015. Epub 2015 Mar 18.

38.

Microreactor array device.

Wiktor P, Brunner A, Kahn P, Qiu J, Magee M, Bian X, Karthikeyan K, LaBaer J.

Sci Rep. 2015 Mar 4;5:8736. doi: 10.1038/srep08736.

39.

Kinome-level screening identifies inhibition of polo-like kinase-1 (PLK1) as a target for enhancing non-viral transgene expression.

Christensen MD, Elmer JJ, Eaton S, Gonzalez-Malerva L, LaBaer J, Rege K.

J Control Release. 2015 Apr 28;204:20-9. doi: 10.1016/j.jconrel.2015.01.036. Epub 2015 Feb 11.

PMID:
25681050
40.

NAPPA as a Real New Method for Protein Microarray Generation.

Díez P, González-González M, Lourido L, Dégano RM, Ibarrola N, Casado-Vela J, LaBaer J, Fuentes M.

Microarrays (Basel). 2015 Apr 24;4(2):214-27. doi: 10.3390/microarrays4020214. Review.

41.

Probing of CD4 binding pocket of HIV-1 gp120 glycoprotein using unnatural phenylalanine analogues.

Yu X, Talukder P, Bhattacharya C, Fahmi NE, Lines JA, Dedkova LM, LaBaer J, Hecht SM, Chen S.

Bioorg Med Chem Lett. 2014 Dec 15;24(24):5699-5703. doi: 10.1016/j.bmcl.2014.10.058. Epub 2014 Oct 22.

PMID:
25453804
42.

Recent advances of proteomics applied to human diseases.

Thongboonkerd V, LaBaer J, Domont GB.

J Proteome Res. 2014 Nov 7;13(11):4493-6. doi: 10.1021/pr501038g. No abstract available.

PMID:
25377741
43.

Use of ENCODE resources to characterize novel proteoforms and missing proteins in the human proteome.

Nilsson CL, Mostovenko E, Lichti CF, Ruggles K, Fenyö D, Rosenbloom KR, Hancock WS, Paik YK, Omenn GS, LaBaer J, Kroes RA, Uhlén M, Hober S, Végvári Á, Andrén PE, Sulman EP, Lang FF, Fuentes M, Carlsohn E, Emmett MR, Moskal JR, Berven FS, Fehniger TE, Marko-Varga G.

J Proteome Res. 2015 Feb 6;14(2):603-8. doi: 10.1021/pr500564q. Epub 2014 Nov 26.

PMID:
25369122
44.

Autoantibody signature for the serologic detection of ovarian cancer.

Anderson KS, Cramer DW, Sibani S, Wallstrom G, Wong J, Park J, Qiu J, Vitonis A, LaBaer J.

J Proteome Res. 2015 Jan 2;14(1):578-86. doi: 10.1021/pr500908n. Epub 2014 Nov 17.

45.

In situ drug-receptor binding kinetics in single cells: a quantitative label-free study of anti-tumor drug resistance.

Wang W, Yin L, Gonzalez-Malerva L, Wang S, Yu X, Eaton S, Zhang S, Chen HY, LaBaer J, Tao N.

Sci Rep. 2014 Oct 14;4:6609. doi: 10.1038/srep06609.

46.

AMPylation of Rho GTPases subverts multiple host signaling processes.

Woolery AR, Yu X, LaBaer J, Orth K.

J Biol Chem. 2014 Nov 21;289(47):32977-88. doi: 10.1074/jbc.M114.601310. Epub 2014 Oct 9.

47.

Mycobacterial membrane vesicles administered systemically in mice induce a protective immune response to surface compartments of Mycobacterium tuberculosis.

Prados-Rosales R, Carreño LJ, Batista-Gonzalez A, Baena A, Venkataswamy MM, Xu J, Yu X, Wallstrom G, Magee DM, LaBaer J, Achkar JM, Jacobs WR Jr, Chan J, Porcelli SA, Casadevall A.

MBio. 2014 Sep 30;5(5):e01921-14. doi: 10.1128/mBio.01921-14.

48.

Recombinant expression, purification, and biophysical characterization of the transmembrane and membrane proximal domains of HIV-1 gp41.

Gong Z, Kessans SA, Song L, Dörner K, Lee HH, Meador LR, LaBaer J, Hogue BG, Mor TS, Fromme P.

Protein Sci. 2014 Nov;23(11):1607-18. doi: 10.1002/pro.2540. Epub 2014 Sep 3.

49.

Measurement of small molecule binding kinetics on a protein microarray by plasmonic-based electrochemical impedance imaging.

Liang W, Wang S, Festa F, Wiktor P, Wang W, Magee M, LaBaer J, Tao N.

Anal Chem. 2014 Oct 7;86(19):9860-5. doi: 10.1021/ac5024556. Epub 2014 Sep 10.

50.

Copper-catalyzed azide-alkyne cycloaddition (click chemistry)-based detection of global pathogen-host AMPylation on self-assembled human protein microarrays.

Yu X, Woolery AR, Luong P, Hao YH, Grammel M, Westcott N, Park J, Wang J, Bian X, Demirkan G, Hang HC, Orth K, LaBaer J.

Mol Cell Proteomics. 2014 Nov;13(11):3164-76. doi: 10.1074/mcp.M114.041103. Epub 2014 Jul 29.

Supplemental Content

Loading ...
Support Center